Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12082 Beta vulgaris HOM05D006023 ORTHO05D007377 2.3e-112 409.1 228 100.0
Ah.07g200580 Amaranthus hybridus HOM05D006023 ORTHO05D007377 3.4e-76 288.9 226 75.7
Hund11133 Selenicereus undatus HOM05D006023 ORTHO05D007377 2.2e-75 286.2 229 72.5
Sc01g0007360 Simmondsia chinensis HOM05D006023 ORTHO05D007377 7.2e-66 254.6 217 69.1
Hma1.2p1_1379F.1_g279210 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 1.2e-60 237.3 207 66.2
Dinv28972 Davidia involucrata HOM05D006023 ORTHO05D007377 5.9e-60 235.0 201 67.2
Actinidia14795 Actinidia chinensis HOM05D006023 ORTHO05D007377 2.9e-59 232.6 201 65.2
Migut.F00744 Erythranthe guttata HOM05D006023 ORTHO05D007377 6.5e-59 231.5 220 63.2
CsaV3_6G000520 Cucumis sativus L. HOM05D006023 ORTHO05D007377 2.5e-58 229.6 203 65.0
GSVIVG01013134001 Vitis vinifera HOM05D006023 ORTHO05D007377 2.5e-58 229.6 201 65.7
MELO3C021213.2 Cucumis melo HOM05D006023 ORTHO05D007377 3.2e-58 229.2 202 64.4
CSS0050040 Camellia sinensis var. sinensis HOM05D006023 ORTHO05D007377 4.2e-58 228.8 211 63.5
Potri.003G093800 Populus trichocarpa HOM05D006023 ORTHO05D007377 7.2e-58 228.0 204 65.7
TWI81G0073 Tripterygium wilfordii HOM05D006023 ORTHO05D007377 7.2e-58 228.0 210 64.3
Lj2A236G57 Lonicera japonica HOM05D006023 ORTHO05D007377 9.4e-58 227.6 205 63.4
Nn5g27684 Nelumbo nucifera HOM05D006023 ORTHO05D007377 9.4e-58 227.6 211 62.6
Cc08_g03000 Coffea canephora HOM05D006023 ORTHO05D007377 4.7e-57 225.3 224 61.2
Cfa012466 Carpinus fangiana HOM05D006023 ORTHO05D007377 1.0e-56 224.2 209 64.1
CiPaw.12G065700 Carya illinoinensis HOM05D006023 ORTHO05D007377 8.8e-56 221.1 209 64.6
Eucgr.D02210 Eucalyptus grandis HOM05D006023 ORTHO05D007377 8.8e-56 221.1 201 65.7
PSO782G2387 Papaver somniferum HOM05D006023 ORTHO05D007377 8.8e-56 221.1 208 62.0
Lalb_Chr17g0341511 Lupinus albus HOM05D006023 ORTHO05D007377 1.5e-55 220.3 206 59.7
Prupe.5G032500 Prunus persica HOM05D006023 ORTHO05D007377 2.0e-55 219.9 209 61.2
Nitab4.5_0002808g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 3.3e-55 219.2 218 58.7
Oeu006244.1 Olea europaea HOM05D006023 ORTHO05D007377 3.3e-55 219.2 227 59.5
CANSAT21G1027 Cannabis sativa HOM05D006023 ORTHO05D007377 5.7e-55 218.4 189 62.4
Gohir.D08G176200 Gossypium hirsutum HOM05D006023 ORTHO05D007377 5.7e-55 218.4 207 62.3
Gorai.004G184000 Gossypium raimondii HOM05D006023 ORTHO05D007377 5.7e-55 218.4 207 62.3
Peaxi162Scf00184g00013 Petunia axillaris HOM05D006023 ORTHO05D007377 5.7e-55 218.4 222 58.1
SGA_v2.0_scaffold6G03147 Striga asiatica HOM05D006023 ORTHO05D007377 7.4e-55 218.0 226 57.5
Nitab4.5_0004555g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 9.7e-55 217.6 230 59.1
PGR031G2123 Punica granatum HOM05D006023 ORTHO05D007377 1.3e-54 217.2 217 62.2
PGSC0003DMG400027709 Solanum tuberosum HOM05D006023 ORTHO05D007377 1.7e-54 216.9 201 60.2
A10p10460 Brassica napus HOM05D006023 ORTHO05D007377 2.2e-54 216.5 207 61.8
Sopen08g025290 Solanum pennellii HOM05D006023 ORTHO05D007377 2.2e-54 216.5 228 56.6
unitig_21.g20896 Utricularia gibba HOM05D006023 ORTHO05D007377 3.7e-54 215.7 206 60.7
Lsat_1_v5_gn_6_80341 Lactuca sativa HOM05D006023 ORTHO05D007377 4.8e-54 215.3 216 61.1
Gohir.A06G181300 Gossypium hirsutum HOM05D006023 ORTHO05D007377 6.3e-54 214.9 207 61.4
Medtr1g095620 Medicago truncatula HOM05D006023 ORTHO05D007377 6.3e-54 214.9 195 61.0
Thecc.08G177100 Theobroma cacao HOM05D006023 ORTHO05D007377 6.3e-54 214.9 207 61.4
arahy.Tifrunner.gnm1.ann1.NMD1RU Arachis hypogaea HOM05D006023 ORTHO05D007377 8.2e-54 214.5 207 59.9
Glyma.10G212800 Glycine max HOM05D006023 ORTHO05D007377 8.2e-54 214.5 208 59.1
Hma1.2p1_0303F.1_g118960 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 8.2e-54 214.5 209 61.2
TAR375G0242 Trochodendron aralioides HOM05D006023 ORTHO05D007377 8.2e-54 214.5 207 61.8
AL8G27520 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.1e-53 214.2 206 62.1
BraA02t06203Z Brassica rapa HOM05D006023 ORTHO05D007377 1.1e-53 214.2 205 62.4
Manes.02G087300 Manihot esculenta HOM05D006023 ORTHO05D007377 1.1e-53 214.2 209 61.7
TPR.G1759 Trifolium pratense HOM05D006023 ORTHO05D007377 1.1e-53 214.2 203 60.1
arahy.Tifrunner.gnm1.ann1.T01SKW Arachis hypogaea HOM05D006023 ORTHO05D007377 1.4e-53 213.8 207 59.9
Gohir.A08G155600 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.4e-53 213.8 207 60.9
Aqoxy4G02643 Aquilegia oxysepala HOM05D006023 ORTHO05D007377 2.4e-53 213.0 209 60.3
ECA240G0359 Erigeron canadensis HOM05D006023 ORTHO05D007377 2.4e-53 213.0 207 61.4
Sed0006289 Sechium edule HOM05D006023 ORTHO05D007377 2.4e-53 213.0 217 60.4
Gohir.D06G188100 Gossypium hirsutum HOM05D006023 ORTHO05D007377 3.1e-53 212.6 206 60.7
Sp6g15140 Schrenkiella parvula HOM05D006023 ORTHO05D007377 3.1e-53 212.6 204 60.8
Actinidia09185 Actinidia chinensis HOM05D006023 ORTHO05D007377 4.1e-53 212.2 201 63.7
BcaB05g21996 Brassica carinata HOM05D006023 ORTHO05D007377 4.1e-53 212.2 206 60.7
A02p11390 Brassica napus HOM05D006023 ORTHO05D007377 5.3e-53 211.8 205 62.0
Gorai.010G220500 Gossypium raimondii HOM05D006023 ORTHO05D007377 5.3e-53 211.8 206 60.2
arahy.Tifrunner.gnm1.ann1.7BP5M1 Arachis hypogaea HOM05D006023 ORTHO05D007377 7.0e-53 211.5 207 59.4
C02p18900 Brassica napus HOM05D006023 ORTHO05D007377 7.0e-53 211.5 205 61.5
BolC2t08031H Brassica oleracea HOM05D006023 ORTHO05D007377 7.0e-53 211.5 205 61.5
Cpa.g.c32853 Carica papaya HOM05D006023 ORTHO05D007377 7.0e-53 211.5 212 59.9
Thhalv10014686m.g Eutrema salsugineum HOM05D006023 ORTHO05D007377 9.1e-53 211.1 203 61.6
FAN18G1789 Fragaria x ananassa HOM05D006023 ORTHO05D007377 9.1e-53 211.1 205 59.0
FvH4_5g22440 Fragaria vesca HOM05D006023 ORTHO05D007377 1.2e-52 210.7 205 59.0
RcHm_v2.0_Chr7g0210201 Rosa chinensis HOM05D006023 ORTHO05D007377 1.2e-52 210.7 202 60.4
RcHm_v2.0_Chr7g0210231 Rosa chinensis HOM05D006023 ORTHO05D007377 1.2e-52 210.7 202 60.4
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 1.2e-52 210.7 209 58.4
AT5G52980 Arabidopsis thaliana HOM05D006023 ORTHO05D007377 1.6e-52 210.3 190 63.7
Sopen10g027320 Solanum pennellii HOM05D006023 ORTHO05D007377 1.6e-52 210.3 228 54.8
BraA10t43129Z Brassica rapa HOM05D006023 ORTHO05D007377 2.0e-52 209.9 206 60.7
AL8G27580 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 2.6e-52 209.5 203 62.6
SGA_v2.0_scaffold196G40921 Striga asiatica HOM05D006023 ORTHO05D007377 2.6e-52 209.5 197 59.9
Ca_10583_v3 Cicer arietinum L. HOM05D006023 ORTHO05D007377 3.5e-52 209.1 217 57.1
Carub.0008s1318 Capsella rubella HOM05D006023 ORTHO05D007377 4.5e-52 208.8 209 60.8
COL.COLO4_16998 Corchorus olitorius HOM05D006023 ORTHO05D007377 4.5e-52 208.8 201 61.7
FAN04G1629 Fragaria x ananassa HOM05D006023 ORTHO05D007377 4.5e-52 208.8 203 58.6
FAN08G2226 Fragaria x ananassa HOM05D006023 ORTHO05D007377 4.5e-52 208.8 205 58.5
THA.LOC104806716 Tarenaya hassleriana HOM05D006023 ORTHO05D007377 4.5e-52 208.8 200 57.5
C09p42690 Brassica napus HOM05D006023 ORTHO05D007377 5.9e-52 208.4 213 59.2
BolC9t57145H Brassica oleracea HOM05D006023 ORTHO05D007377 5.9e-52 208.4 213 59.2
FAN13G0319 Fragaria x ananassa HOM05D006023 ORTHO05D007377 5.9e-52 208.4 205 58.5
Glyma.20G178200 Glycine max HOM05D006023 ORTHO05D007377 7.7e-52 208.0 203 58.6
Lj5g0000896 Lotus japonicus HOM05D006023 ORTHO05D007377 7.7e-52 208.0 205 59.0
CARHR265970 Cardamine hirsuta HOM05D006023 ORTHO05D007377 2.2e-51 206.5 203 60.6
BcaC03g14468 Brassica carinata HOM05D006023 ORTHO05D007377 2.9e-51 206.1 205 61.5
Aa31LG3G9490 Aethionema arabicum HOM05D006023 ORTHO05D007377 3.8e-51 205.7 206 60.2
DCAR_004289 Daucus carota HOM05D006023 ORTHO05D007377 6.5e-51 204.9 201 61.2
Rhsim07G0128700 Rhododendron simsii HOM05D006023 ORTHO05D007377 1.9e-50 203.4 244 54.1
Phvul.007G092700 Phaseolus vulgaris HOM05D006023 ORTHO05D007377 5.5e-50 201.8 206 57.3
Atru.chr6.1650 Acer truncatum HOM05D006023 ORTHO05D007377 1.2e-49 200.7 221 57.5
PSO675G2981 Papaver somniferum HOM05D006023 ORTHO05D007377 2.1e-49 199.9 192 59.4
Psat6g182880 Pisum sativum HOM05D006023 ORTHO05D007377 4.0e-48 195.7 151 68.2
Hma1.2p1_0574F.1_g181560 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 5.2e-48 195.3 160 67.5
Hma1.2p1_1379F.1_g279205 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 5.2e-48 195.3 160 67.5
MBI04_g41609_MAGBIO Magnolia biondii HOM05D006023 ORTHO05D007377 6.8e-48 194.9 219 55.3
MD06G1036800 Malus domestica HOM05D006023 ORTHO05D007377 4.4e-47 192.2 200 59.0
HPP92_020908 Vanilla planifolia HOM05D006023 ORTHO05D007377 1.7e-46 190.3 218 51.4
AL4G21070 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 2.2e-46 189.9 216 56.0
AUR62018698 Chenopodium quinoa HOM05D006023 ORTHO05D007377 2.8e-46 189.5 123 82.9
HanXRQChr13g0414191 Helianthus annuus HOM05D006023 ORTHO05D007377 2.0e-44 183.3 178 59.0
PSO541G2859 Papaver somniferum HOM05D006023 ORTHO05D007377 1.7e-43 180.3 173 59.5
CAN.G298.27 Capsicum annuum HOM05D006023 ORTHO05D007377 5.0e-43 178.7 139 69.1
ATR0665G562 Amborella trichopoda HOM05D006023 ORTHO05D007377 6.5e-43 178.3 189 56.1
Ciclev10022247m.g Citrus clementina HOM05D006023 ORTHO05D007377 9.4e-42 174.5 183 58.5
CDE06G2650 Ceratophyllum demersum HOM05D006023 ORTHO05D007377 6.1e-41 171.8 184 58.2
vmacro14181 Vaccinium macrocarpon HOM05D006023 ORTHO05D007377 5.2e-40 168.7 364 36.8
Zm00001eb024850 Zea mays HOM05D006023 ORTHO05D007377 1.4e-37 160.6 163 57.1
MSTRG.15799 Avicennia marina HOM05D006023 ORTHO05D007377 1.1e-34 151.0 117 70.1
PGSC0003DMG400017522 Solanum tuberosum HOM05D006023 ORTHO05D007377 1.2e-33 147.5 152 57.2
Solyc08g076770.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 3.6e-33 146.0 154 54.5
Mapoly0102s0011 Marchantia polymorpha HOM05D006023 ORTHO05D007377 5.2e-32 142.1 192 46.9
PSO063G6826 Papaver somniferum HOM05D006023 ORTHO05D007377 5.2e-32 142.1 115 67.0
Pp3c18_16040 Physcomitrium patens HOM05D006023 ORTHO05D007377 1.3e-30 137.5 193 44.0
Duzib068G1405 Durio zibethinus HOM05D006023 ORTHO05D007377 1.1e-29 134.4 131 59.5
SMO143G0066 Selaginella moellendorffii HOM05D006023 ORTHO05D007377 4.6e-28 129.0 195 38.5
AUR62007305 Chenopodium quinoa HOM05D006023 ORTHO05D007377 1.2e-23 114.4 75 80.0
AagrBONN_evm.TU.Sc2ySwM_228.1949 Anthoceros agrestis HOM05D006023 ORTHO05D007377 2.0e-23 113.6 175 44.0
CBR_g88177 Chara braunii HOM05D006023 ORTHO05D007377 4.4e-23 112.5 194 41.8
FAN18G1032 Fragaria x ananassa HOM05D006023 ORTHO05D007377 6.4e-22 108.6 131 51.1
ClCG06G003760 Citrullus lanatus HOM05D006023 ORTHO05D007377 2.7e-20 103.2 112 58.9
SEGI_27853 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 1.7e-19 100.5 126 48.4
Dinv25231 Davidia involucrata HOM05D006023 ORTHO05D007377 5.0e-19 99.0 74 71.6
FAN18G2414 Fragaria x ananassa HOM05D006023 ORTHO05D007377 5.8e-15 85.5 76 61.8
Solyc08g076740.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 9.2e-13 78.2 76 60.5
SEGI_36898 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 1.1e-10 71.2 62 58.1
MD16G1272600 Malus domestica HOM05D006023 ORTHO05D007377 2.5e-10 70.1 48 72.9
Cre10.g438750 Chlamydomonas reinhardtii HOM05D006023 ORTHO05D007377 9.5e-10 68.2 185 31.4
BcaNung06895 Brassica carinata HOM05D006023 ORTHO05D007377 3.1e-08 63.2 82 48.8
Solyc10g074822.1 Solanum lycopersicum HOM05D006023 ORTHO05D007377 5.2e-08 62.4 47 68.1


User provided reference genes

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