Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 4.2e-30 134.0 68 100.0
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 6.3e-26 120.2 63 96.8
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 5.0e-23 110.5 60 93.3
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 2.3e-20 101.7 60 85.0
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 2.3e-20 101.7 60 85.0
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 3.8e-15 84.3 60 66.7
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 1.9e-14 82.0 60 65.0
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 9.4e-14 79.7 60 61.7
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 1.2e-13 79.3 60 65.0
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 1.2e-13 79.3 60 65.0
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 2.1e-13 78.6 60 61.7
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 2.1e-13 78.6 60 61.7
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 2.7e-13 78.2 60 60.0
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 2.7e-13 78.2 63 58.7
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 3.6e-13 77.8 63 61.9
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 3.6e-13 77.8 60 60.0
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 4.7e-13 77.4 60 60.0
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 6.1e-13 77.0 60 60.0
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 6.1e-13 77.0 60 60.0
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 8.0e-13 76.6 60 61.7
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 8.0e-13 76.6 63 65.1
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 1.0e-12 76.3 60 58.3
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 1.0e-12 76.3 60 56.7
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 1.0e-12 76.3 60 56.7
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 1.0e-12 76.3 60 58.3
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 1.0e-12 76.3 60 60.0
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 1.8e-12 75.5 60 58.3
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 1.8e-12 75.5 60 61.7
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 1.8e-12 75.5 59 59.3
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 2.3e-12 75.1 63 58.7
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 3.0e-12 74.7 63 57.1
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 4.0e-12 74.3 60 60.0
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 4.0e-12 74.3 60 58.3
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 5.2e-12 73.9 60 60.0
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 6.8e-12 73.6 60 58.3
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 6.8e-12 73.6 60 58.3
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 8.8e-12 73.2 60 60.0
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 8.8e-12 73.2 60 56.7
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 1.2e-11 72.8 60 55.0
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 1.2e-11 72.8 63 54.0
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 1.2e-11 72.8 60 56.7
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 1.2e-11 72.8 60 58.3
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 1.5e-11 72.4 60 56.7
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 1.5e-11 72.4 60 56.7
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 2.0e-11 72.0 63 54.0
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 2.0e-11 72.0 60 56.7
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 2.0e-11 72.0 60 60.0
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 2.0e-11 72.0 60 53.3
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 2.0e-11 72.0 60 56.7
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 2.6e-11 71.6 60 53.3
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 2.6e-11 71.6 60 53.3
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 3.4e-11 71.2 60 55.0
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 3.4e-11 71.2 60 56.7
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 3.4e-11 71.2 60 56.7
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 3.4e-11 71.2 60 55.0
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 3.4e-11 71.2 60 56.7
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 4.4e-11 70.9 60 55.0
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 4.4e-11 70.9 60 53.3
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 5.7e-11 70.5 60 55.0
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 5.7e-11 70.5 60 53.3
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 5.7e-11 70.5 60 53.3
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 5.7e-11 70.5 60 53.3
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 5.7e-11 70.5 60 53.3
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 5.7e-11 70.5 60 55.0
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 5.7e-11 70.5 60 53.3
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 7.5e-11 70.1 60 56.7
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 7.5e-11 70.1 60 56.7
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 9.8e-11 69.7 59 57.6
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 9.8e-11 69.7 60 53.3
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 1.7e-10 68.9 59 52.5
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 1.7e-10 68.9 60 58.3
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 1.7e-10 68.9 60 56.7
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 1.7e-10 68.9 60 53.3
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 1.7e-10 68.9 60 51.7
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 2.2e-10 68.6 60 51.7
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 2.2e-10 68.6 70 51.4
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 3.7e-10 67.8 60 53.3
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 8.3e-10 66.6 59 54.2
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 1.4e-09 65.9 60 51.7
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 1.4e-09 65.9 60 48.3
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 1.8e-09 65.5 60 51.7
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 3.1e-09 64.7 60 48.3
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 3.1e-09 64.7 60 50.0
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 3.1e-09 64.7 60 50.0
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 3.1e-09 64.7 60 51.7
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 4.1e-09 64.3 60 50.0
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 5.4e-09 63.9 60 51.7
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 7.0e-09 63.5 60 48.3
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 1.2e-08 62.8 60 48.3
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.2e-08 62.8 60 50.0
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 2.0e-08 62.0 60 48.3
EL10Ac3g06052 Beta vulgaris HOM05D002442 ORTHO05D005775 2.7e-08 61.6 31 96.8
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 3.5e-08 61.2 73 49.3
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 5.9e-08 60.5 59 49.2
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.9e-07 58.2 55 50.9
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 5.0e-07 57.4 64 43.8
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 8.6e-07 56.6 49 51.0
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 1.9e-06 55.5 59 40.7
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 3.3e-06 54.7 59 42.4
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 9.5e-06 53.1 51 49.0


User provided reference genes

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