Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 5.1e-79 297.7 156 100.0
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 5.0e-34 148.3 101 74.3
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 1.0e-31 140.6 106 72.6
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 4.2e-25 118.6 112 62.5
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 1.8e-23 113.2 105 61.9
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 5.1e-23 111.7 102 58.8
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 7.4e-22 107.8 107 58.9
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 2.2e-21 106.3 99 60.6
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 2.2e-21 106.3 99 60.6
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 4.8e-21 105.1 107 54.2
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 8.2e-21 104.4 99 58.6
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 8.2e-21 104.4 99 58.6
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 1.4e-20 103.6 104 54.8
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 1.8e-20 103.2 100 58.0
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 2.4e-20 102.8 99 58.6
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 3.1e-20 102.4 106 53.8
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 3.1e-20 102.4 99 57.6
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 4.1e-20 102.1 99 56.6
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 4.1e-20 102.1 99 57.6
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 5.3e-20 101.7 100 57.0
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 5.3e-20 101.7 100 57.0
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 5.3e-20 101.7 105 52.4
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 7.0e-20 101.3 99 58.6
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 7.0e-20 101.3 95 60.0
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 9.1e-20 100.9 105 54.3
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 9.1e-20 100.9 101 53.5
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 9.1e-20 100.9 107 52.3
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 1.2e-19 100.5 104 53.8
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 1.5e-19 100.1 99 56.6
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 2.0e-19 99.8 100 56.0
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 2.0e-19 99.8 103 56.3
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 2.0e-19 99.8 105 52.4
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 2.6e-19 99.4 99 54.5
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 2.6e-19 99.4 99 55.6
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 2.6e-19 99.4 101 54.5
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 3.5e-19 99.0 104 53.8
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 4.5e-19 98.6 100 53.0
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 4.5e-19 98.6 102 55.9
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 7.7e-19 97.8 102 56.9
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 7.7e-19 97.8 99 57.6
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 1.0e-18 97.4 102 53.9
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 1.0e-18 97.4 101 56.4
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 1.0e-18 97.4 96 58.3
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 1.3e-18 97.1 103 56.3
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 1.3e-18 97.1 106 57.5
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 1.7e-18 96.7 99 55.6
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 1.7e-18 96.7 96 56.2
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 2.2e-18 96.3 99 57.6
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 2.2e-18 96.3 105 52.4
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 2.2e-18 96.3 100 53.0
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 2.9e-18 95.9 103 52.4
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 2.9e-18 95.9 99 55.6
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 3.8e-18 95.5 99 55.6
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 3.8e-18 95.5 105 55.2
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 5.0e-18 95.1 104 52.9
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 5.0e-18 95.1 100 53.0
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 5.0e-18 95.1 98 58.2
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 5.0e-18 95.1 102 51.0
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 5.0e-18 95.1 105 54.3
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 6.5e-18 94.7 109 54.1
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 6.5e-18 94.7 99 56.6
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 6.5e-18 94.7 99 56.6
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.1e-17 94.0 99 54.5
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 1.1e-17 94.0 95 55.8
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 1.1e-17 94.0 104 53.8
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 1.4e-17 93.6 105 50.5
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 1.4e-17 93.6 99 56.6
Thhalv10019378m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 1.9e-17 93.2 99 50.5
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 1.9e-17 93.2 103 56.3
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 1.9e-17 93.2 104 51.0
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 2.5e-17 92.8 99 54.5
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 2.5e-17 92.8 97 54.6
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 4.2e-17 92.0 99 56.6
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 4.2e-17 92.0 99 53.5
Sp5g34740 Schrenkiella parvula HOM05D003613 ORTHO05D004055 5.5e-17 91.7 99 49.5
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 7.2e-17 91.3 96 57.3
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 7.2e-17 91.3 99 51.5
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 7.2e-17 91.3 99 55.6
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 9.4e-17 90.9 99 52.5
Carub.0002s2654 Capsella rubella HOM05D003613 ORTHO05D004055 1.2e-16 90.5 99 49.5
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 1.6e-16 90.1 99 54.5
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 2.1e-16 89.7 92 57.6
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 2.7e-16 89.4 99 51.5
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 2.7e-16 89.4 99 48.5
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 2.7e-16 89.4 100 50.0
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 2.7e-16 89.4 89 58.4
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 3.6e-16 89.0 48 100.0
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 3.6e-16 89.0 98 52.0
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 4.7e-16 88.6 89 57.3
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 6.1e-16 88.2 99 51.5
AL2G40350 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 8.0e-16 87.8 99 48.5
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 8.0e-16 87.8 108 50.0
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 8.0e-16 87.8 108 50.0
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 8.0e-16 87.8 99 51.5
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 1.0e-15 87.4 94 54.3
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 1.0e-15 87.4 101 55.4
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 1.0e-15 87.4 99 55.6
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 1.4e-15 87.0 97 50.5
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.8e-15 86.7 99 50.5
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.8e-15 86.7 99 50.5
Thhalv10009201m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 2.3e-15 86.3 99 51.5
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 2.3e-15 86.3 99 50.5
Sp1g14410 Schrenkiella parvula HOM05D003613 ORTHO05D004055 2.3e-15 86.3 99 51.5
AT1G79660 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 3.0e-15 85.9 99 46.5
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 3.0e-15 85.9 106 50.0
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 3.0e-15 85.9 99 50.5
CARHR016650 Cardamine hirsuta HOM05D003613 ORTHO05D004055 3.9e-15 85.5 99 50.5
CARHR073400 Cardamine hirsuta HOM05D003613 ORTHO05D004055 6.7e-15 84.7 99 49.5
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 6.7e-15 84.7 95 54.7
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 6.7e-15 84.7 87 58.6
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 6.7e-15 84.7 99 49.5
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 6.7e-15 84.7 96 55.2
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 6.7e-15 84.7 91 53.8
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 8.8e-15 84.3 100 49.0
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 8.8e-15 84.3 100 49.0
BraA09t41473Z Brassica rapa HOM05D003613 ORTHO05D004055 8.8e-15 84.3 108 49.1
A09p61000 Brassica napus HOM05D003613 ORTHO05D004055 2.6e-14 82.8 94 52.1
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 2.6e-14 82.8 65 63.1
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 3.3e-14 82.4 97 51.5
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 3.3e-14 82.4 93 52.7
BolC5t30160H Brassica oleracea HOM05D003613 ORTHO05D004055 3.3e-14 82.4 99 49.5
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 3.3e-14 82.4 98 49.0
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 4.4e-14 82.0 75 58.7
BcaB03g13047 Brassica carinata HOM05D003613 ORTHO05D004055 4.4e-14 82.0 100 51.0
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 4.4e-14 82.0 98 48.0
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 5.7e-14 81.6 101 47.5
Carub.0001s1593 Capsella rubella HOM05D003613 ORTHO05D004055 7.4e-14 81.3 99 49.5
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 7.4e-14 81.3 103 48.5
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 9.7e-14 80.9 99 49.5
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 1.7e-13 80.1 95 46.3
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 1.7e-13 80.1 113 48.7
BcaC07g38803 Brassica carinata HOM05D003613 ORTHO05D004055 1.7e-13 80.1 100 48.0
C08p17390 Brassica napus HOM05D003613 ORTHO05D004055 1.7e-13 80.1 100 48.0
BolC8t49365H Brassica oleracea HOM05D003613 ORTHO05D004055 1.7e-13 80.1 100 48.0
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 1.7e-13 80.1 97 48.5
BcaC05g25604 Brassica carinata HOM05D003613 ORTHO05D004055 2.2e-13 79.7 99 48.5
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 2.2e-13 79.7 66 63.6
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 2.8e-13 79.3 100 49.0
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 3.7e-13 79.0 98 46.9
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 3.7e-13 79.0 100 48.0
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 3.7e-13 79.0 66 62.1
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 3.7e-13 79.0 96 53.1
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 6.3e-13 78.2 97 51.5
C05p14290 Brassica napus HOM05D003613 ORTHO05D004055 8.2e-13 77.8 99 47.5
BcaC08g47524 Brassica carinata HOM05D003613 ORTHO05D004055 1.1e-12 77.4 100 46.0
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 1.4e-12 77.0 99 48.5
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 1.8e-12 76.6 70 61.4
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 2.4e-12 76.3 80 53.8
A07p44660 Brassica napus HOM05D003613 ORTHO05D004055 2.4e-12 76.3 100 47.0
A08p31400 Brassica napus HOM05D003613 ORTHO05D004055 2.4e-12 76.3 100 47.0
BraA07t31975Z Brassica rapa HOM05D003613 ORTHO05D004055 2.4e-12 76.3 100 47.0
BraA08t35063Z Brassica rapa HOM05D003613 ORTHO05D004055 2.4e-12 76.3 100 47.0
CSS0016880 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 2.4e-12 76.3 80 56.2
EL10Ac5g12922 Beta vulgaris HOM05D007126 ORTHO05D008974 3.1e-12 75.9 42 95.2
BcaC08g47525 Brassica carinata HOM05D003613 ORTHO05D004055 4.1e-12 75.5 100 46.0
BolC6t40365H Brassica oleracea HOM05D003613 ORTHO05D004055 4.1e-12 75.5 100 46.0
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 7.0e-12 74.7 98 43.9
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 7.0e-12 74.7 71 60.6
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 9.1e-12 74.3 86 48.8
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 9.1e-12 74.3 96 46.9
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 1.6e-11 73.6 99 47.5
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 1.6e-11 73.6 71 56.3
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.6e-11 73.6 98 43.9
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 3.5e-11 72.4 75 53.3
Pp3c10_10840 Physcomitrium patens HOM05D003613 ORTHO05D004055 5.9e-11 71.6 99 49.5
Pp3c14_25540 Physcomitrium patens HOM05D003613 ORTHO05D004055 5.9e-11 71.6 82 56.1
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 5.9e-11 71.6 88 47.7
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 7.7e-11 71.2 96 43.8
DCAR_021377 Daucus carota HOM05D003613 ORTHO05D004055 2.2e-10 69.7 93 44.1
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 2.2e-10 69.7 88 47.7
BcaC03g14996 Brassica carinata HOM05D003613 ORTHO05D004055 2.9e-10 69.3 81 49.4
BolC2t08604H Brassica oleracea HOM05D003613 ORTHO05D004055 2.9e-10 69.3 81 49.4
C02p25300 Brassica napus HOM05D003613 ORTHO05D004055 3.8e-10 68.9 81 49.4
BolC8t51544H Brassica oleracea HOM05D003613 ORTHO05D004055 8.5e-10 67.8 78 50.0
BcaC03g17203 Brassica carinata HOM05D003613 ORTHO05D004055 4.2e-09 65.5 78 48.7
BolC2t11219H Brassica oleracea HOM05D003613 ORTHO05D004055 4.2e-09 65.5 78 48.7
SMO307G0037 Selaginella moellendorffii HOM05D000818 ORTHO05D004055 5.5e-09 65.1 81 46.9
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 5.5e-09 65.1 74 58.1
SMO001G0027 Selaginella moellendorffii HOM05D003613 ORTHO05D004055 7.2e-09 64.7 81 46.9
C08p39730 Brassica napus HOM05D003613 ORTHO05D004055 2.1e-08 63.2 73 50.7
arahy.Tifrunner.gnm1.ann1.LI0G0T Arachis hypogaea HOM05D003613 ORTHO05D004055 3.6e-08 62.4 63 52.4
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 4.7e-08 62.0 78 46.2
Sc10g0008460 Simmondsia chinensis HOM05D003613 ORTHO05D004055 8.0e-08 61.2 97 41.2
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 3.0e-07 59.3 93 40.9
AagrBONN_evm.TU.Sc2ySwM_368.2820 Anthoceros agrestis HOM05D003613 ORTHO05D004055 5.2e-07 58.5 91 41.8
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 6.7e-07 58.2 60 48.3
DCAR_021376 Daucus carota HOM05D003613 ORTHO05D004055 7.5e-06 54.7 79 45.6


User provided reference genes

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