Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 2.1e-287 991.9 541 100.0
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 1.6e-226 789.6 479 91.0
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 5.0e-148 528.9 513 57.3
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 1.5e-144 517.3 375 69.6
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 1.2e-136 491.1 400 61.0
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 1.0e-132 478.0 420 55.7
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 2.5e-131 473.4 391 59.1
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 4.3e-131 472.6 411 56.2
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 5.6e-131 472.2 389 59.9
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 3.6e-130 469.5 414 57.7
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 4.7e-130 469.2 382 61.3
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 6.2e-130 468.8 412 56.1
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 1.4e-129 467.6 412 55.8
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.4e-129 467.6 412 55.8
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.2e-128 464.5 382 58.6
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 1.5e-128 464.2 421 54.9
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 2.6e-128 463.4 414 57.0
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.6e-128 463.4 381 59.1
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 7.6e-128 461.8 382 59.4
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 9.9e-128 461.5 406 56.7
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 9.9e-128 461.5 417 55.4
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 1.3e-127 461.1 393 58.3
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 1.3e-127 461.1 382 57.3
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 1.7e-127 460.7 415 56.4
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 2.2e-127 460.3 382 58.1
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 2.9e-127 459.9 374 59.1
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 3.8e-127 459.5 415 54.5
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 6.4e-127 458.8 382 58.1
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 1.1e-126 458.0 384 57.3
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.9e-126 457.2 428 53.7
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 1.9e-126 457.2 411 54.7
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 1.9e-126 457.2 372 59.1
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 2.4e-126 456.8 387 58.4
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 3.2e-126 456.4 382 58.1
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 3.2e-126 456.4 395 57.2
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 4.2e-126 456.1 382 58.6
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 4.2e-126 456.1 382 58.9
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 5.4e-126 455.7 382 58.6
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 7.1e-126 455.3 379 58.6
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.6e-125 454.1 387 58.7
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 2.1e-125 453.8 382 58.4
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 3.5e-125 453.0 416 54.6
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 6.0e-125 452.2 406 55.7
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 7.8e-125 451.8 411 56.7
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 1.0e-124 451.4 388 59.5
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 1.7e-124 450.7 411 55.2
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 2.3e-124 450.3 411 55.2
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 5.1e-124 449.1 373 59.2
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 6.6e-124 448.7 391 55.5
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 6.6e-124 448.7 410 54.4
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 6.6e-124 448.7 412 55.3
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 1.1e-123 448.0 410 54.4
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 1.5e-123 447.6 391 55.8
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 2.5e-123 446.8 411 54.5
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 2.5e-123 446.8 410 55.6
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 2.5e-123 446.8 411 55.7
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 2.5e-123 446.8 427 54.3
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 3.3e-123 446.4 387 57.4
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 3.3e-123 446.4 377 56.5
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 4.3e-123 446.0 411 54.5
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 4.3e-123 446.0 411 54.3
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 5.6e-123 445.7 408 55.9
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 1.3e-122 444.5 390 56.7
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 1.3e-122 444.5 382 55.5
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 2.8e-122 443.4 413 54.2
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 3.6e-122 443.0 411 54.0
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 3.6e-122 443.0 411 54.0
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 6.2e-122 442.2 383 54.8
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 8.1e-122 441.8 382 58.1
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 1.4e-121 441.0 411 53.5
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 1.8e-121 440.7 371 58.2
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.8e-121 440.7 411 54.7
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 4.0e-121 439.5 377 55.4
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 5.3e-121 439.1 400 54.2
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 6.9e-121 438.7 413 52.3
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 1.2e-120 438.0 382 55.2
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 2.6e-120 436.8 389 55.0
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 4.4e-120 436.0 400 54.0
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 4.4e-120 436.0 400 54.0
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 5.8e-120 435.6 386 55.4
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 5.8e-120 435.6 411 53.3
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 5.8e-120 435.6 411 53.3
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 7.6e-120 435.3 400 54.0
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 7.6e-120 435.3 350 60.0
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 7.6e-120 435.3 382 55.0
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 7.6e-120 435.3 382 56.0
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 7.6e-120 435.3 382 55.8
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 1.3e-119 434.5 378 57.4
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 1.7e-119 434.1 381 55.9
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 2.2e-119 433.7 380 56.1
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 4.9e-119 432.6 370 57.6
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 1.1e-118 431.4 410 52.9
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 1.1e-118 431.4 410 52.9
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 3.2e-118 429.9 382 54.7
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.4e-118 429.1 382 55.0
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 7.1e-118 428.7 382 55.0
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 2.1e-117 427.2 390 57.7
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 2.7e-117 426.8 382 54.7
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 7.9e-117 425.2 382 54.5
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 1.0e-116 424.9 431 50.1
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 8.7e-116 421.8 371 56.1
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 1.3e-114 417.9 379 56.5
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 4.0e-113 412.9 370 54.1
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 9.0e-113 411.8 350 56.9
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 9.9e-112 408.3 377 55.4
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 9.9e-112 408.3 377 55.4
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 9.9e-112 408.3 346 57.5
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 4.9e-111 406.0 375 54.4
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 5.5e-110 402.5 410 51.0
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 5.5e-110 402.5 365 55.1
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 3.5e-109 399.8 505 43.2
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.5e-107 394.4 309 60.8
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 6.2e-106 389.0 338 55.3
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 8.1e-106 388.7 377 52.0
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 6.9e-105 385.6 418 50.5
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 1.5e-104 384.4 379 48.8
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 9.3e-102 375.2 387 50.6
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 3.5e-101 373.2 317 56.8
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 3.5e-101 373.2 402 50.7
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 6.0e-101 372.5 317 56.8
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 1.1e-99 368.2 382 49.0
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 4.3e-99 366.3 312 57.7
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 2.1e-98 364.0 372 49.5
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 9.0e-97 358.6 377 50.4
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 3.4e-96 356.7 310 57.1
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 1.3e-95 354.8 381 43.8
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 6.9e-89 332.4 384 45.8
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.0e-84 318.5 299 53.8
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 1.3e-82 311.6 211 68.7
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 3.7e-82 310.1 392 42.3
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 3.4e-80 303.5 214 66.4
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 2.2e-79 300.8 261 56.3
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 7.2e-78 295.8 239 59.0
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 8.8e-68 262.3 414 38.2
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 1.5e-67 261.5 225 56.4
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 1.2e-51 208.8 411 33.3
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 2.3e-47 194.5 176 56.2
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 3.8e-47 193.7 293 38.6
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 3.6e-45 187.2 195 49.2
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 1.2e-27 129.0 104 58.7
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 8.6e-23 112.8 77 66.2
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 9.5e-22 109.4 63 74.6
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 5.4e-17 93.6 54 74.1
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 4.6e-16 90.5 93 47.3
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 1.0e-15 89.4 95 46.3
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 2.5e-14 84.7 68 55.9
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 8.7e-07 59.7 32 75.0


User provided reference genes

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