Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g11944 Beta vulgaris HOM05D002007 ORTHO05D005759 1.1e-92 343.2 165 100.0
Sc07g0008110 Simmondsia chinensis HOM05D002007 ORTHO05D005759 2.3e-53 212.6 166 60.2
Nitab4.5_0000236g0050 Nicotiana tabacum HOM05D002007 ORTHO05D005759 1.3e-45 186.8 165 52.7
Nn1g09291 Nelumbo nucifera HOM05D002007 ORTHO05D005759 3.0e-45 185.7 166 53.6
Nitab4.5_0005896g0010 Nicotiana tabacum HOM05D002007 ORTHO05D005759 3.0e-45 185.7 165 52.1
TAR629G0178 Trochodendron aralioides HOM05D002007 ORTHO05D005759 3.9e-45 185.3 166 53.0
PSO782G5315 Papaver somniferum HOM05D002007 ORTHO05D005759 2.5e-44 182.6 166 53.0
Dinv09412 Davidia involucrata HOM05D002007 ORTHO05D005759 4.3e-44 181.8 162 54.3
CiPaw.05G148700 Carya illinoinensis HOM05D002007 ORTHO05D005759 9.5e-44 180.6 167 54.5
CiPaw.06G072700 Carya illinoinensis HOM05D002007 ORTHO05D005759 1.2e-43 180.3 167 53.3
Prupe.5G014700 Prunus persica HOM05D002007 ORTHO05D005759 1.6e-43 179.9 166 53.6
Oeu014069.1 Olea europaea HOM05D002007 ORTHO05D005759 2.1e-43 179.5 165 51.5
Haze_08040 Corylus avellana HOM05D002007 ORTHO05D005759 6.2e-43 177.9 166 54.2
Haze_08050 Corylus avellana HOM05D002007 ORTHO05D005759 6.2e-43 177.9 166 54.2
Peaxi162Scf01644g00002 Petunia axillaris HOM05D002007 ORTHO05D005759 6.2e-43 177.9 165 49.7
Aqoxy3G01987 Aquilegia oxysepala HOM05D002007 ORTHO05D005759 1.4e-42 176.8 166 53.0
FAN08G1950 Fragaria x ananassa HOM05D002007 ORTHO05D005759 3.1e-42 175.6 166 54.2
PGSC0003DMG400001950 Solanum tuberosum HOM05D002007 ORTHO05D005759 3.1e-42 175.6 165 51.5
Solyc08g075230.1 Solanum lycopersicum HOM05D002007 ORTHO05D005759 5.2e-42 174.9 165 50.3
CAN.G514.11 Capsicum annuum HOM05D002007 ORTHO05D005759 6.8e-42 174.5 165 51.5
Oeu057154.1 Olea europaea HOM05D002007 ORTHO05D005759 8.9e-42 174.1 163 49.1
MD06G1012000 Malus domestica HOM05D002007 ORTHO05D005759 1.2e-41 173.7 166 52.4
FAN04G2167 Fragaria x ananassa HOM05D002007 ORTHO05D005759 1.5e-41 173.3 164 54.3
Actinidia32796 Actinidia chinensis HOM05D002007 ORTHO05D005759 2.6e-41 172.6 148 52.7
CANSAT35G0197 Cannabis sativa HOM05D002007 ORTHO05D005759 2.6e-41 172.6 166 51.8
QL12p003363 Quercus lobata HOM05D002007 ORTHO05D005759 3.4e-41 172.2 165 51.5
Sopen08g023830 Solanum pennellii HOM05D002007 ORTHO05D005759 4.4e-41 171.8 165 49.7
FvH4_5g24680 Fragaria vesca HOM05D002007 ORTHO05D005759 9.9e-41 170.6 166 53.0
RhsimUnG0122600 Rhododendron simsii HOM05D002007 ORTHO05D005759 9.9e-41 170.6 166 51.8
RcHm_v2.0_Chr7g0215061 Rosa chinensis HOM05D002007 ORTHO05D005759 1.3e-40 170.2 166 51.8
Ciclev10003495m.g Citrus clementina HOM05D002007 ORTHO05D005759 1.7e-40 169.9 166 51.2
vmacro00104 Vaccinium macrocarpon HOM05D002007 ORTHO05D005759 1.7e-40 169.9 163 50.3
Nn3g19126 Nelumbo nucifera HOM05D002007 ORTHO05D005759 2.2e-40 169.5 167 50.9
Rhsim11G0038300 Rhododendron simsii HOM05D002007 ORTHO05D005759 3.8e-40 168.7 166 51.2
Duzib068G0709 Durio zibethinus HOM05D002007 ORTHO05D005759 6.4e-40 167.9 166 49.4
Duzib205G1662 Durio zibethinus HOM05D002007 ORTHO05D005759 1.1e-39 167.2 166 51.8
FAN13G3190 Fragaria x ananassa HOM05D002007 ORTHO05D005759 1.4e-39 166.8 159 54.1
FAN18G3178 Fragaria x ananassa HOM05D002007 ORTHO05D005759 1.4e-39 166.8 159 54.1
Nitab4.5_0010692g0010 Nicotiana tabacum HOM05D002007 ORTHO05D005759 1.4e-39 166.8 166 47.6
Peaxi162Scf00876g00032 Petunia axillaris HOM05D002007 ORTHO05D005759 1.4e-39 166.8 165 47.3
COL.COLO4_16737 Corchorus olitorius HOM05D002007 ORTHO05D005759 1.9e-39 166.4 166 51.2
FAN13G3232 Fragaria x ananassa HOM05D002007 ORTHO05D005759 2.4e-39 166.0 159 54.1
Lj4g0014196 Lotus japonicus HOM05D002007 ORTHO05D000355 2.4e-39 166.0 166 51.8
TWI32G1199 Tripterygium wilfordii HOM05D002007 ORTHO05D005759 2.4e-39 166.0 166 50.0
Phvul.002G122900 Phaseolus vulgaris HOM05D002007 ORTHO05D005759 3.2e-39 165.6 167 50.3
TPR.G7868 Trifolium pratense HOM05D002007 ORTHO05D005759 7.1e-39 164.5 164 47.0
QL12p003360 Quercus lobata HOM05D002007 ORTHO05D005759 9.2e-39 164.1 158 51.9
Sed0024497 Sechium edule HOM05D002007 ORTHO05D005759 9.2e-39 164.1 166 50.6
Thecc.03G321300 Theobroma cacao HOM05D002007 ORTHO05D005759 9.2e-39 164.1 166 51.2
Atru.chr6.2147 Acer truncatum HOM05D002007 ORTHO05D005759 1.2e-38 163.7 166 51.8
arahy.Tifrunner.gnm1.ann1.D5KL38 Arachis hypogaea HOM05D002007 ORTHO05D000355 1.2e-38 163.7 166 48.2
arahy.Tifrunner.gnm1.ann1.WWV1B2 Arachis hypogaea HOM05D002007 ORTHO05D005759 1.2e-38 163.7 166 48.2
HanXRQChr13g0412731 Helianthus annuus HOM05D002007 ORTHO05D005759 1.2e-38 163.7 164 48.8
Glyma.09G217800 Glycine max HOM05D002007 ORTHO05D005759 1.6e-38 163.3 167 48.5
Nitab4.5_0000943g0020 Nicotiana tabacum HOM05D002007 ORTHO05D005759 2.7e-38 162.5 166 47.0
THA.LOC104811158 Tarenaya hassleriana HOM05D002007 ORTHO05D005759 2.7e-38 162.5 165 48.5
VMungo1215G3059 Vigna mungo HOM05D002007 ORTHO05D005759 2.7e-38 162.5 167 49.1
ClCG07G011150 Citrullus lanatus HOM05D002007 ORTHO05D005759 7.8e-38 161.0 166 50.6
Actinidia01243 Actinidia chinensis HOM05D002007 ORTHO05D005759 1.3e-37 160.2 139 53.2
Glyma.01G152600 Glycine max HOM05D002007 ORTHO05D005759 1.3e-37 160.2 167 48.5
CAN.G947.27 Capsicum annuum HOM05D002007 ORTHO05D005759 1.7e-37 159.8 165 46.1
Potri.003G046000 Populus trichocarpa HOM05D002007 ORTHO05D005759 1.7e-37 159.8 167 49.1
Migut.A00477 Erythranthe guttata HOM05D002007 ORTHO05D005759 2.3e-37 159.5 165 46.7
Phvul.003G277900 Phaseolus vulgaris HOM05D002007 ORTHO05D005759 3.0e-37 159.1 164 49.4
Oeu011637.1 Olea europaea HOM05D002007 ORTHO05D005759 3.9e-37 158.7 165 46.1
Oeu023064.1 Olea europaea HOM05D002007 ORTHO05D005759 3.9e-37 158.7 165 45.5
PGSC0003DMG400029286 Solanum tuberosum HOM05D002007 ORTHO05D005759 3.9e-37 158.7 165 44.8
arahy.Tifrunner.gnm1.ann1.R12JL5 Arachis hypogaea HOM05D002007 ORTHO05D005759 5.1e-37 158.3 167 46.7
arahy.Tifrunner.gnm1.ann1.TCKY6I Arachis hypogaea HOM05D002007 ORTHO05D005759 5.1e-37 158.3 167 46.7
Gorai.009G305100 Gossypium raimondii HOM05D002007 ORTHO05D005759 5.1e-37 158.3 166 50.0
Cc08_g06070 Coffea canephora HOM05D002007 ORTHO05D005759 6.6e-37 157.9 166 48.8
Sp2g10270 Schrenkiella parvula HOM05D002007 ORTHO05D005759 6.6e-37 157.9 165 48.5
Cpa.g.sc579.3 Carica papaya HOM05D002007 ORTHO05D005759 1.1e-36 157.1 167 46.7
Glyma.16G108200 Glycine max HOM05D002007 ORTHO05D005759 1.1e-36 157.1 164 49.4
Gohir.A05G288800 Gossypium hirsutum HOM05D002007 ORTHO05D005759 1.1e-36 157.1 166 49.4
Sed0024576 Sechium edule HOM05D002007 ORTHO05D005759 1.1e-36 157.1 166 50.0
Ca_22461_v3 Cicer arietinum L. HOM05D002007 ORTHO05D005759 1.5e-36 156.8 166 47.6
VMungo0251G0075 Vigna mungo HOM05D002007 ORTHO05D005759 2.5e-36 156.0 164 47.6
Medtr5g025760 Medicago truncatula HOM05D002007 ORTHO05D005759 3.3e-36 155.6 166 46.4
Psat0s1099g0040 Pisum sativum HOM05D002007 ORTHO05D005759 4.3e-36 155.2 166 45.2
Sabra03G0020400 Salix brachista HOM05D002007 ORTHO05D005759 4.3e-36 155.2 167 48.5
Lj2g0009290 Lotus japonicus HOM05D002007 ORTHO05D005759 5.6e-36 154.8 167 46.1
Gohir.A08G148400 Gossypium hirsutum HOM05D002007 ORTHO05D005759 9.6e-36 154.1 166 48.2
Solyc12g096180.1 Solanum lycopersicum HOM05D002007 ORTHO05D005759 9.6e-36 154.1 163 44.2
Eucgr.E01156 Eucalyptus grandis HOM05D002007 ORTHO05D005759 1.2e-35 153.7 167 46.1
Medtr8g072140 Medicago truncatula HOM05D002007 ORTHO05D005759 1.6e-35 153.3 166 47.6
Potri.004G234500 Populus trichocarpa HOM05D002007 ORTHO05D005759 1.6e-35 153.3 167 47.9
Thhalv10001032m.g Eutrema salsugineum HOM05D002007 ORTHO05D005759 2.1e-35 152.9 165 46.7
ECA240G4318 Erigeron canadensis HOM05D002007 ORTHO05D000355 3.6e-35 152.1 159 45.9
Manes.07G043400 Manihot esculenta HOM05D002007 ORTHO05D005759 1.8e-34 149.8 166 47.0
PGR042G3326 Punica granatum HOM05D002007 ORTHO05D005759 1.8e-34 149.8 167 44.9
Gorai.004G176700 Gossypium raimondii HOM05D002007 ORTHO05D005759 2.4e-34 149.4 166 47.6
Lsat_1_v5_gn_6_74040 Lactuca sativa HOM05D002007 ORTHO05D005759 4.0e-34 148.7 163 44.2
BcaC03g16740 Brassica carinata HOM05D002007 ORTHO05D005759 5.2e-34 148.3 166 47.6
BcaC06g34446 Brassica carinata HOM05D002007 ORTHO05D005759 5.2e-34 148.3 165 46.7
C02p46130 Brassica napus HOM05D002007 ORTHO05D005759 5.2e-34 148.3 166 47.6
BraA02t07935Z Brassica rapa HOM05D002007 ORTHO05D005759 5.2e-34 148.3 166 47.6
Carub.0008s0281 Capsella rubella HOM05D002007 ORTHO05D005759 5.2e-34 148.3 165 47.3
ECA233G2534 Erigeron canadensis HOM05D002007 ORTHO05D005759 5.2e-34 148.3 164 45.7
A02p29030 Brassica napus HOM05D002007 ORTHO05D005759 6.9e-34 147.9 166 47.0
Manes.10G095600 Manihot esculenta HOM05D002007 ORTHO05D005759 6.9e-34 147.9 166 45.8
Psat4g108400 Pisum sativum HOM05D002007 ORTHO05D005759 6.9e-34 147.9 166 47.6
Lsat_1_v5_gn_6_16960 Lactuca sativa HOM05D002007 ORTHO05D005759 8.9e-34 147.5 154 46.8
Aa31LG9G7700 Aethionema arabicum HOM05D002007 ORTHO05D005759 1.2e-33 147.1 164 45.1
AT5G45320 Arabidopsis thaliana HOM05D002007 ORTHO05D005759 1.2e-33 147.1 165 46.7
BolC2t10670H Brassica oleracea HOM05D002007 ORTHO05D005759 1.2e-33 147.1 166 47.0
Gohir.D08G169500 Gossypium hirsutum HOM05D002007 ORTHO05D005759 1.5e-33 146.7 166 47.0
HanXRQChr08g0227001 Helianthus annuus HOM05D002007 ORTHO05D005759 1.5e-33 146.7 165 46.1
TPR.G11463 Trifolium pratense HOM05D002007 ORTHO05D005759 1.5e-33 146.7 166 46.4
DCAR_030946 Daucus carota HOM05D002007 ORTHO05D005759 2.0e-33 146.4 170 45.9
CARHR176770 Cardamine hirsuta HOM05D002007 ORTHO05D005759 3.4e-33 145.6 165 46.1
Lalb_Chr05g0215211 Lupinus albus HOM05D002007 ORTHO05D005759 5.8e-33 144.8 167 45.5
AL8G13480 Arabidopsis lyrata HOM05D002007 ORTHO05D005759 7.6e-33 144.4 165 46.1
AL8G13540 Arabidopsis lyrata HOM05D002007 ORTHO05D005759 7.6e-33 144.4 165 46.1
Lalb_Chr09g0325081 Lupinus albus HOM05D002007 ORTHO05D005759 1.3e-32 143.7 167 43.7
HanXRQChr03g0082821 Helianthus annuus HOM05D002007 ORTHO05D005759 2.9e-32 142.5 164 43.3
DCAR_004537 Daucus carota HOM05D002007 ORTHO05D005759 3.8e-32 142.1 165 43.6
BcaB07g30461 Brassica carinata HOM05D002007 ORTHO05D005759 6.4e-32 141.4 166 47.6
Sabra01G0179300 Salix brachista HOM05D002007 ORTHO05D005759 6.4e-32 141.4 167 44.9
CsaV3_4G007100 Cucumis sativus L. HOM05D002007 ORTHO05D005759 8.4e-32 141.0 136 52.2
BcaC06g31560 Brassica carinata HOM05D002007 ORTHO05D005759 1.9e-31 139.8 165 43.0
ATR0568G058 Amborella trichopoda HOM05D002007 ORTHO05D005759 3.2e-31 139.0 168 43.5
Lalb_Chr05g0229301 Lupinus albus HOM05D002007 ORTHO05D005759 7.1e-31 137.9 166 45.2
DCAR_000713 Daucus carota HOM05D002007 ORTHO05D005759 1.6e-30 136.7 167 41.9
CsaV3_4G014820 Cucumis sativus L. HOM05D002007 ORTHO05D000355 2.1e-30 136.3 167 43.7
ClCG11G016180 Citrullus lanatus HOM05D002007 ORTHO05D005759 4.6e-30 135.2 167 43.7
Migut.E01381 Erythranthe guttata HOM05D002007 ORTHO05D005759 6.0e-30 134.8 164 42.7
Sabra03G0020600 Salix brachista HOM05D002007 ORTHO05D005759 6.0e-30 134.8 165 43.6
Sopen12g032050 Solanum pennellii HOM05D007367 ORTHO05D008866 6.0e-30 134.8 146 43.8
Sed0013162 Sechium edule HOM05D002007 ORTHO05D005759 1.3e-29 133.7 167 43.7
Gohir.D12G203700 Gossypium hirsutum HOM05D002007 ORTHO05D005759 1.7e-29 133.3 167 43.1
Gorai.008G218500 Gossypium raimondii HOM05D002007 ORTHO05D005759 1.7e-29 133.3 167 43.1
C07p28350 Brassica napus HOM05D002007 ORTHO05D005759 5.1e-29 131.7 151 44.4
BolC7t43375H Brassica oleracea HOM05D002007 ORTHO05D005759 5.1e-29 131.7 151 44.4
MBI04_g30804_MAGBIO Magnolia biondii HOM05D002007 ORTHO05D005759 6.6e-29 131.3 159 39.6
A06p46680 Brassica napus HOM05D002007 ORTHO05D005759 8.7e-29 131.0 151 43.7
BraA06t27540Z Brassica rapa HOM05D002007 ORTHO05D005759 8.7e-29 131.0 151 43.7
HPP92_022732 Vanilla planifolia HOM05D002007 ORTHO05D005759 8.7e-29 131.0 167 42.5
Gohir.A12G200900 Gossypium hirsutum HOM05D002007 ORTHO05D005759 1.1e-28 130.6 167 43.1
HPP92_022745 Vanilla planifolia HOM05D002007 ORTHO05D005759 3.3e-28 129.0 164 40.2
unitig_0.g2832 Utricularia gibba HOM05D002007 ORTHO05D005759 4.3e-28 128.6 165 36.4
SHI32759 Sapria himalayana HOM05D002007 ORTHO05D005759 1.6e-27 126.7 150 45.3
HPP92_027661 Vanilla planifolia HOM05D002007 ORTHO05D005759 1.4e-26 123.6 163 39.3
SalBow4G0822 Salvia bowleyana HOM05D002007 ORTHO05D000355 3.1e-26 122.5 164 40.2
MSTRG.25753 Avicennia marina HOM05D002007 ORTHO05D005759 1.2e-25 120.6 122 50.0
Os08g0163600 Oryza sativa ssp. japonica HOM05D009720 ORTHO05D005759 1.2e-25 120.6 158 38.0
CDE02G4391 Ceratophyllum demersum HOM05D002007 ORTHO05D005759 1.1e-23 114.0 130 44.6
Os06g0710500 Oryza sativa ssp. japonica HOM05D002007 ORTHO05D005759 1.1e-23 114.0 167 38.3
MD16G1286800 Malus domestica HOM05D002007 ORTHO05D005759 5.1e-21 105.1 94 55.3
Zm00001eb227630 Zea mays HOM05D002007 ORTHO05D005759 2.0e-17 93.2 164 30.5
Zm00001eb415280 Zea mays HOM05D009720 ORTHO05D012012 7.6e-17 91.3 159 30.8
Zm00001eb153250 Zea mays HOM05D009720 ORTHO05D012012 2.9e-16 89.4 166 31.9
HPP92_007452 Vanilla planifolia HOM05D002007 ORTHO05D005759 6.4e-16 88.2 135 34.8
Zm00001eb373170 Zea mays HOM05D009720 ORTHO05D012012 1.9e-15 86.7 166 31.9
Zm00001eb198890 Zea mays HOM05D009720 ORTHO05D012012 2.4e-15 86.3 166 30.7
Zm00001eb319490 Zea mays HOM05D009720 ORTHO05D012012 4.2e-15 85.5 166 30.1
Carub.0001s3312 Capsella rubella HOM05D002007 ORTHO05D005759 4.6e-14 82.0 162 28.4
Gohir.D05G290066 Gossypium hirsutum HOM05D002007 ORTHO05D005759 1.0e-13 80.9 79 48.1
SEGI_25929 Sequoiadendron giganteum HOM05D002540 ORTHO05D002672 2.3e-13 79.7 167 26.3
Zm00001eb343480 Zea mays HOM05D009720 ORTHO05D012012 2.3e-13 79.7 166 28.3
Carub.0005s0427 Capsella rubella HOM05D002540 ORTHO05D002672 1.1e-12 77.4 148 27.0
Dinv37439 Davidia involucrata HOM05D006619 ORTHO05D008351 1.9e-12 76.6 58 55.2
Zm00001eb081960 Zea mays HOM05D009720 ORTHO05D012012 2.8e-11 72.8 150 30.0
Zm00001eb081970 Zea mays HOM05D009720 ORTHO05D012012 2.8e-11 72.8 150 30.0
AL5G15120 Arabidopsis lyrata HOM05D002540 ORTHO05D002672 1.8e-10 70.1 147 25.9
Aa31LG2G6160 Aethionema arabicum HOM05D002540 ORTHO05D002672 5.3e-10 68.6 147 24.5
C02p18330 Brassica napus HOM05D002007 ORTHO05D005759 9.0e-10 67.8 105 34.3
Carub.0001s1280 Capsella rubella HOM05D002540 ORTHO05D002672 9.0e-10 67.8 147 25.9
CARHR013380 Cardamine hirsuta HOM05D002540 ORTHO05D002672 9.0e-10 67.8 148 26.4
AT3G26350 Arabidopsis thaliana HOM05D002540 ORTHO05D002672 1.2e-09 67.4 147 25.9
Thhalv10008230m.g Eutrema salsugineum HOM05D002540 ORTHO05D002672 1.2e-09 67.4 147 25.9
Zm00001eb081950 Zea mays HOM05D009720 ORTHO05D012012 1.5e-09 67.0 127 29.9
THA.LOC104824011 Tarenaya hassleriana HOM05D002540 ORTHO05D002672 4.5e-09 65.5 147 23.1
AL1G24700 Arabidopsis lyrata HOM05D002540 ORTHO05D002672 1.0e-08 64.3 147 24.5
Ah.03g133410 Amaranthus hybridus HOM05D002540 ORTHO05D002672 1.7e-08 63.5 165 25.5
Ah.02g130270 Amaranthus hybridus HOM05D002540 ORTHO05D002672 6.5e-08 61.6 164 25.6
EL10Ac2g04746 Beta vulgaris HOM05D002540 ORTHO05D002672 6.5e-08 61.6 164 26.2
AT1G13050 Arabidopsis thaliana HOM05D002540 ORTHO05D002672 8.4e-08 61.2 147 23.8
CARHR147360 Cardamine hirsuta HOM05D002540 ORTHO05D002672 8.4e-08 61.2 147 23.8
AUR62005507 Chenopodium quinoa HOM05D002540 ORTHO05D002672 8.4e-08 61.2 164 25.6
A02p34520 Brassica napus HOM05D002540 ORTHO05D002672 1.9e-07 60.1 147 23.1
BraA02t08462Z Brassica rapa HOM05D002540 ORTHO05D002672 1.9e-07 60.1 147 23.1
TAR624G0635 Trochodendron aralioides HOM05D002007 ORTHO05D005759 4.2e-07 58.9 61 45.9
Sc11g0000870 Simmondsia chinensis HOM05D002540 ORTHO05D002672 5.5e-07 58.5 165 24.2
Sp1g11600 Schrenkiella parvula HOM05D002540 ORTHO05D002672 7.1e-07 58.2 147 22.4
unitig_26.g10374 Utricularia gibba HOM05D002540 ORTHO05D002672 7.9e-06 54.7 132 24.2


User provided reference genes

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