Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g11913 Beta vulgaris HOM05D004130 ORTHO05D004705 4.3e-46 187.6 90 100.0
unitig_32.g11633 Utricularia gibba HOM05D004130 ORTHO05D004705 8.9e-36 153.3 90 81.1
AUR62027316 Chenopodium quinoa HOM05D004130 ORTHO05D004705 2.6e-35 151.8 86 81.4
Hund11098 Selenicereus undatus HOM05D004130 ORTHO05D004705 9.8e-35 149.8 90 77.8
AUR62007416 Chenopodium quinoa HOM05D004130 ORTHO05D004705 1.7e-34 149.1 82 82.9
Ah.12g056050 Amaranthus hybridus HOM05D004130 ORTHO05D004705 2.9e-34 148.3 83 83.1
Sc01g0007080 Simmondsia chinensis HOM05D004130 ORTHO05D004705 5.1e-31 137.5 87 73.6
PSO063G4979 Papaver somniferum HOM05D004130 ORTHO05D004705 1.6e-29 132.5 90 70.0
PSO782G2341 Papaver somniferum HOM05D004130 ORTHO05D004705 1.6e-29 132.5 90 70.0
Glyma.04G122900 Glycine max HOM05D004130 ORTHO05D004705 2.8e-29 131.7 87 72.4
ClCG10G000940 Citrullus lanatus HOM05D004130 ORTHO05D004705 3.6e-29 131.3 89 71.9
PGR031G3679 Punica granatum HOM05D004130 ORTHO05D004705 4.7e-29 131.0 91 70.3
PGR067G0004 Punica granatum HOM05D004130 ORTHO05D004705 4.7e-29 131.0 91 70.3
Prupe.5G019500 Prunus persica HOM05D004130 ORTHO05D004705 1.1e-28 129.8 91 68.1
Peaxi162Scf00193g00214 Petunia axillaris HOM05D004130 ORTHO05D004705 1.4e-28 129.4 91 69.2
Eucgr.E01218 Eucalyptus grandis HOM05D004130 ORTHO05D004705 1.8e-28 129.0 91 69.2
Oeu046800.1 Olea europaea HOM05D004130 ORTHO05D004705 1.8e-28 129.0 86 70.9
Os03g0576600 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 1.8e-28 129.0 86 72.1
RcHm_v2.0_Chr7g0213621 Rosa chinensis HOM05D004130 ORTHO05D004705 1.8e-28 129.0 91 68.1
Sabra01G0100700 Salix brachista HOM05D004130 ORTHO05D004705 1.8e-28 129.0 91 69.2
Lalb_Chr05g0215391 Lupinus albus HOM05D004130 ORTHO05D004705 2.3e-28 128.6 91 70.3
Lalb_Chr16g0380701 Lupinus albus HOM05D004130 ORTHO05D004705 2.3e-28 128.6 91 69.2
CSS0014160 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 3.1e-28 128.3 91 69.2
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 3.1e-28 128.3 89 68.5
Glyma.09G214500 Glycine max HOM05D004130 ORTHO05D004705 4.0e-28 127.9 87 70.1
Solyc08g075690.3 Solanum lycopersicum HOM05D004130 ORTHO05D004705 4.0e-28 127.9 91 68.1
Actinidia14738 Actinidia chinensis HOM05D004130 ORTHO05D004705 5.2e-28 127.5 91 69.2
Phvul.002G127700 Phaseolus vulgaris HOM05D004130 ORTHO05D004705 5.2e-28 127.5 87 71.3
Sabra03G0070800 Salix brachista HOM05D004130 ORTHO05D004705 5.2e-28 127.5 91 69.2
SalBow8G1427 Salvia bowleyana HOM05D004130 ORTHO05D004705 5.2e-28 127.5 91 68.1
MD00G1002100 Malus domestica HOM05D004130 ORTHO05D004705 6.8e-28 127.1 91 67.0
Nn1g02053 Nelumbo nucifera HOM05D004130 ORTHO05D004705 6.8e-28 127.1 91 68.1
Os08g0162800 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 6.8e-28 127.1 89 67.4
Sopen08g024340 Solanum pennellii HOM05D004130 ORTHO05D004705 6.8e-28 127.1 91 68.1
Migut.E01354 Erythranthe guttata HOM05D004130 ORTHO05D004705 1.2e-27 126.3 86 69.8
Sed0010064 Sechium edule HOM05D004130 ORTHO05D004705 1.2e-27 126.3 89 69.7
Aqoxy4G02079 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 1.5e-27 125.9 91 67.0
Aqoxy7G01323 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 1.5e-27 125.9 91 67.0
Lsat_1_v5_gn_3_23340 Lactuca sativa HOM05D004130 ORTHO05D004705 1.5e-27 125.9 86 69.8
THA.LOC104814400 Tarenaya hassleriana HOM05D004130 ORTHO05D004705 1.5e-27 125.9 91 68.1
TAR374G0121 Trochodendron aralioides HOM05D004130 ORTHO05D004705 1.5e-27 125.9 91 68.1
Zm00001eb415460 Zea mays HOM05D004130 ORTHO05D004705 1.5e-27 125.9 89 68.5
Actinidia01260 Actinidia chinensis HOM05D004130 ORTHO05D004705 2.0e-27 125.6 91 67.0
CDE02G3877 Ceratophyllum demersum HOM05D004130 ORTHO05D004705 2.0e-27 125.6 89 69.7
Gorai.007G349800 Gossypium raimondii HOM05D004130 ORTHO05D004705 2.0e-27 125.6 91 67.0
Manes.15G182400 Manihot esculenta HOM05D004130 ORTHO05D004705 2.0e-27 125.6 92 69.6
QL12p001893 Quercus lobata HOM05D004130 ORTHO05D004705 2.0e-27 125.6 89 68.5
PGSC0003DMG400030867 Solanum tuberosum HOM05D004130 ORTHO05D004705 2.0e-27 125.6 91 67.0
Dinv41817 Davidia involucrata HOM05D004130 ORTHO05D004705 2.6e-27 125.2 91 67.0
Duzib106G0486 Durio zibethinus HOM05D004130 ORTHO05D004705 2.6e-27 125.2 90 67.8
Potri.003G103700 Populus trichocarpa HOM05D004130 ORTHO05D004705 2.6e-27 125.2 91 68.1
CSS0012724 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 3.4e-27 124.8 91 65.9
CSS0035325 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 3.4e-27 124.8 91 65.9
Cpa.g.c33773 Carica papaya HOM05D004130 ORTHO05D004705 3.4e-27 124.8 91 65.9
CDE11G1231 Ceratophyllum demersum HOM05D004130 ORTHO05D004705 3.4e-27 124.8 86 70.9
THA.LOC104798518 Tarenaya hassleriana HOM05D004130 ORTHO05D004705 3.4e-27 124.8 91 67.0
GSVIVG01022804001 Vitis vinifera HOM05D004130 ORTHO05D004705 3.4e-27 124.8 89 67.4
Gohir.A11G304400 Gossypium hirsutum HOM05D004130 ORTHO05D004705 4.4e-27 124.4 89 66.3
CsaV3_3G001010 Cucumis sativus L. HOM05D004130 ORTHO05D004705 5.8e-27 124.0 89 67.4
ECA246G1091 Erigeron canadensis HOM05D004130 ORTHO05D004705 5.8e-27 124.0 91 65.9
Gohir.D11G319800 Gossypium hirsutum HOM05D004130 ORTHO05D004705 5.8e-27 124.0 89 66.3
Psat2g143680 Pisum sativum HOM05D004130 ORTHO05D004705 5.8e-27 124.0 91 67.0
TAR375G1053 Trochodendron aralioides HOM05D004130 ORTHO05D004705 5.8e-27 124.0 90 66.7
ATR0829G178 Amborella trichopoda HOM05D004130 ORTHO05D004705 7.5e-27 123.6 91 67.0
DCAR_030897 Daucus carota HOM05D004130 ORTHO05D004705 7.5e-27 123.6 86 67.4
Gohir.D11G319700 Gossypium hirsutum HOM05D004130 ORTHO05D004705 7.5e-27 123.6 91 65.9
arahy.Tifrunner.gnm1.ann1.DIJ3RT Arachis hypogaea HOM05D004130 ORTHO05D004705 9.9e-27 123.2 83 68.7
arahy.Tifrunner.gnm1.ann1.X5SRIL Arachis hypogaea HOM05D004130 ORTHO05D004705 9.9e-27 123.2 83 68.7
COL.COLO4_37232 Corchorus olitorius HOM05D004130 ORTHO05D004705 9.9e-27 123.2 87 69.0
MELO3C031937.2 Cucumis melo HOM05D004130 ORTHO05D004705 9.9e-27 123.2 89 67.4
CiPaw.12G072200 Carya illinoinensis HOM05D004130 ORTHO05D004705 1.3e-26 122.9 91 68.1
Ciclev10002973m.g Citrus clementina HOM05D004130 ORTHO05D004705 1.3e-26 122.9 91 64.8
FvH4_5g24090 Fragaria vesca HOM05D004130 ORTHO05D004705 1.3e-26 122.9 86 67.4
FAN04G1172 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.3e-26 122.9 86 67.4
FAN13G0805 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.3e-26 122.9 86 67.4
FAN18G1566 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.3e-26 122.9 86 67.4
FAN18G3743 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.3e-26 122.9 86 67.4
Lj2g0015830 Lotus japonicus HOM05D004130 ORTHO05D004705 1.3e-26 122.9 91 64.8
Thecc.03G325000 Theobroma cacao HOM05D004130 ORTHO05D004705 1.3e-26 122.9 89 67.4
Medtr5g026740 Medicago truncatula HOM05D004130 ORTHO05D004705 1.7e-26 122.5 91 63.7
Aa31LG2G14240 Aethionema arabicum HOM05D004130 ORTHO05D004705 2.2e-26 122.1 91 67.0
C05p39640 Brassica napus HOM05D004130 ORTHO05D004705 2.2e-26 122.1 89 69.7
Dinv37412 Davidia involucrata HOM05D004130 ORTHO05D004705 2.2e-26 122.1 89 66.3
Zm00001eb378890 Zea mays HOM05D004130 ORTHO05D004705 2.2e-26 122.1 86 68.6
CAN.G800.12 Capsicum annuum HOM05D004130 ORTHO05D004705 3.7e-26 121.3 88 67.0
DCAR_006311 Daucus carota HOM05D004130 ORTHO05D004705 3.7e-26 121.3 82 70.7
Manes.17G006800 Manihot esculenta HOM05D004130 ORTHO05D004705 3.7e-26 121.3 92 66.3
Os06g0115300 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 3.7e-26 121.3 90 64.4
Potri.001G130200 Populus trichocarpa HOM05D004130 ORTHO05D004705 4.9e-26 120.9 91 63.7
MSTRG.11879 Avicennia marina HOM05D004130 ORTHO05D004705 6.4e-26 120.6 89 64.0
Rhsim11G0034100 Rhododendron simsii HOM05D004130 ORTHO05D004705 6.4e-26 120.6 86 66.3
Psat0s1441g0080 Pisum sativum HOM05D000032 ORTHO05D004705 8.3e-26 120.2 87 67.8
Atru.chr6.2108 Acer truncatum HOM05D004130 ORTHO05D004705 1.1e-25 119.8 91 64.8
BcaB03g13788 Brassica carinata HOM05D004130 ORTHO05D004705 1.1e-25 119.8 89 66.3
Nn3g19256 Nelumbo nucifera HOM05D004130 ORTHO05D004705 1.4e-25 119.4 87 66.7
Sp1g27510 Schrenkiella parvula HOM05D004130 ORTHO05D004705 1.9e-25 119.0 85 69.4
TWI36G0806 Tripterygium wilfordii HOM05D004130 ORTHO05D004705 1.9e-25 119.0 90 64.4
Gorai.007G349900 Gossypium raimondii HOM05D004130 ORTHO05D004705 2.4e-25 118.6 85 65.9
BcaC05g27197 Brassica carinata HOM05D004130 ORTHO05D004705 3.2e-25 118.2 89 67.4
Nitab4.5_0000030g0220 Nicotiana tabacum HOM05D004130 ORTHO05D004705 3.2e-25 118.2 86 65.1
BolC5t32704H Brassica oleracea HOM05D004130 ORTHO05D004705 4.1e-25 117.9 85 69.4
Ca_25095_v3 Cicer arietinum L. HOM05D004130 ORTHO05D004705 4.1e-25 117.9 85 65.9
Ca_30395_v3 Cicer arietinum L. HOM05D004130 ORTHO05D004705 4.1e-25 117.9 85 65.9
HanXRQChr17g0537111 Helianthus annuus HOM05D004130 ORTHO05D004705 4.1e-25 117.9 85 68.2
AL1G45890 Arabidopsis lyrata HOM05D004130 ORTHO05D004705 5.4e-25 117.5 91 64.8
Carub.0001s3012 Capsella rubella HOM05D004130 ORTHO05D004705 5.4e-25 117.5 86 67.4
CiPaw.11G103700 Carya illinoinensis HOM05D004130 ORTHO05D004705 5.4e-25 117.5 91 63.7
Dinv25573 Davidia involucrata HOM05D004130 ORTHO05D004705 5.4e-25 117.5 86 66.3
PGR042G1275 Punica granatum HOM05D004130 ORTHO05D004705 5.4e-25 117.5 91 62.6
AT1G31812 Arabidopsis thaliana HOM05D004130 ORTHO05D004705 7.1e-25 117.1 86 66.3
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 7.1e-25 117.1 86 68.6
BraA09t38994Z Brassica rapa HOM05D004130 ORTHO05D004705 7.1e-25 117.1 89 67.4
MBI04_g27275_MAGBIO Magnolia biondii HOM05D004130 ORTHO05D004705 7.1e-25 117.1 86 66.3
Nitab4.5_0001023g0180 Nicotiana tabacum HOM05D004130 ORTHO05D004705 7.1e-25 117.1 86 64.0
TWI12G1099 Tripterygium wilfordii HOM05D004130 ORTHO05D004705 7.1e-25 117.1 91 63.7
A05p25500 Brassica napus HOM05D004130 ORTHO05D004705 9.2e-25 116.7 85 68.2
BraA05t21434Z Brassica rapa HOM05D004130 ORTHO05D004705 9.2e-25 116.7 85 68.2
BcaB07g32828 Brassica carinata HOM05D004130 ORTHO05D004705 1.6e-24 115.9 89 65.2
TPR.G17251 Trifolium pratense HOM05D004130 ORTHO05D004705 1.6e-24 115.9 85 63.5
Thhalv10009206m.g Eutrema salsugineum HOM05D004130 ORTHO05D004705 2.1e-24 115.5 92 66.3
CANSAT21G0569 Cannabis sativa HOM05D004130 ORTHO05D004705 2.7e-24 115.2 90 61.1
BolC5t31827H Brassica oleracea HOM05D004130 ORTHO05D004705 3.5e-24 114.8 87 66.7
vmacro00053 Vaccinium macrocarpon HOM05D004130 ORTHO05D004705 3.5e-24 114.8 85 64.7
C05p31030 Brassica napus HOM05D004130 ORTHO05D004705 6.0e-24 114.0 87 65.5
Hma1.2p1_1873F.1_g306170 Hydrangea macrophylla HOM05D004130 ORTHO05D004705 1.3e-23 112.8 87 60.9
MD06G1017000 Malus domestica HOM05D004130 ORTHO05D004705 1.3e-23 112.8 91 60.4
BolC8t48106H Brassica oleracea HOM05D004130 ORTHO05D004705 2.3e-23 112.1 91 63.7
CARHR031130 Cardamine hirsuta HOM05D004130 ORTHO05D004705 2.3e-23 112.1 86 64.0
ECA240G1912 Erigeron canadensis HOM05D000302 ORTHO05D000334 2.3e-23 112.1 82 65.9
Aqoxy4G01989 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 3.0e-23 111.7 92 62.0
BcaC07g37723 Brassica carinata HOM05D004130 ORTHO05D004705 3.0e-23 111.7 90 64.4
Eucgr.C00828 Eucalyptus grandis HOM05D004130 ORTHO05D004705 5.1e-23 110.9 84 61.9
Prupe.7G202100 Prunus persica HOM05D004130 ORTHO05D004705 1.5e-22 109.4 87 58.6
BraA08t33038Z Brassica rapa HOM05D004130 ORTHO05D004705 2.5e-22 108.6 85 67.1
Cc00_g07460 Coffea canephora HOM05D004130 ORTHO05D004705 3.3e-22 108.2 86 60.5
AagrBONN_evm.TU.Sc2ySwM_344.2271 Anthoceros agrestis HOM05D004130 ORTHO05D004705 5.6e-22 107.5 85 57.6
FvH4_1g08340 Fragaria vesca HOM05D004130 ORTHO05D004705 5.6e-22 107.5 85 58.8
FAN19G1377 Fragaria x ananassa HOM05D004130 ORTHO05D004705 5.6e-22 107.5 85 58.8
MD15G1215200 Malus domestica HOM05D004130 ORTHO05D004705 5.6e-22 107.5 91 57.1
CBR_g18879 Chara braunii HOM05D004130 ORTHO05D004705 7.3e-22 107.1 81 61.7
FAN28G0738 Fragaria x ananassa HOM05D004130 ORTHO05D004705 7.3e-22 107.1 85 60.0
FAN23G0613 Fragaria x ananassa HOM05D004130 ORTHO05D004705 2.1e-21 105.5 82 59.8
Mapoly0146s0043 Marchantia polymorpha HOM05D004130 ORTHO05D004705 2.8e-21 105.1 85 58.8
Thecc.09G080000 Theobroma cacao HOM05D004130 ORTHO05D004705 6.2e-21 104.0 86 57.0
COL.COLO4_18121 Corchorus olitorius HOM05D004130 ORTHO05D004705 8.1e-21 103.6 86 55.8
Duzib150G0272 Durio zibethinus HOM05D004130 ORTHO05D004705 2.4e-20 102.1 82 57.3
SEGI_06410 Sequoiadendron giganteum HOM05D004130 ORTHO05D004705 2.4e-20 102.1 78 62.8
FAN26G2855 Fragaria x ananassa HOM05D003252 ORTHO05D003640 3.1e-20 101.7 78 60.3
Gohir.A07G014450 Gossypium hirsutum HOM05D004130 ORTHO05D004705 6.8e-20 100.5 83 56.6
SMO340G0182 Selaginella moellendorffii HOM05D004130 ORTHO05D004705 6.8e-20 100.5 82 59.8
BolC5t32707H Brassica oleracea HOM05D004130 ORTHO05D004705 1.2e-19 99.8 80 65.0
Gohir.D07G014100 Gossypium hirsutum HOM05D004130 ORTHO05D004705 9.9e-19 96.7 83 53.0
Gorai.001G014900 Gossypium raimondii HOM05D004130 ORTHO05D004705 9.9e-19 96.7 83 53.0
TAR636G0177 Trochodendron aralioides HOM05D004130 ORTHO05D004705 9.9e-19 96.7 74 63.5
Rhsim11G0034000 Rhododendron simsii HOM05D004130 ORTHO05D004705 1.3e-18 96.3 86 58.1
Atru.chr7.1674 Acer truncatum HOM05D004130 ORTHO05D004705 4.9e-18 94.4 82 53.7
PRCOL_00007032 Prasinoderma coloniale HOM05D004130 ORTHO05D004705 4.9e-18 94.4 85 52.9
Pp3c14_11470 Physcomitrium patens HOM05D004130 ORTHO05D004705 8.4e-18 93.6 85 56.5
MCO11G819 Micromonas commoda HOM05D004130 ORTHO05D004705 3.2e-17 91.7 81 50.6
Gohir.A11G304300 Gossypium hirsutum HOM05D004130 ORTHO05D004705 4.2e-17 91.3 64 67.2
GSVIVG01015105001 Vitis vinifera HOM05D004130 ORTHO05D004705 2.7e-16 88.6 60 65.0
Psat2g138640 Pisum sativum HOM05D011477 ORTHO05D004705 3.5e-16 88.2 64 64.1
Pp3c2_5450 Physcomitrium patens HOM05D004130 ORTHO05D004705 1.7e-15 85.9 85 51.8
Actinidia32778 Actinidia chinensis HOM05D004130 ORTHO05D004705 4.3e-14 81.3 94 52.1
Haze_25978 Corylus avellana HOM05D003252 ORTHO05D003640 5.6e-14 80.9 64 59.4
Haze_08042 Corylus avellana HOM05D004130 ORTHO05D004705 7.3e-14 80.5 91 50.5
Haze_08052 Corylus avellana HOM05D004130 ORTHO05D004705 7.3e-14 80.5 91 50.5
CSS0007814 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 2.1e-13 79.0 60 65.0
Cre02.g118850 Chlamydomonas reinhardtii HOM05D004130 ORTHO05D004705 6.2e-13 77.4 77 49.4
FAN26G3461 Fragaria x ananassa HOM05D003252 ORTHO05D003640 1.3e-10 69.7 77 45.5
Haze_27157 Corylus avellana HOM05D004130 ORTHO05D004705 8.4e-10 67.0 61 50.8
A09p34530 Brassica napus HOM05D004130 ORTHO05D004705 1.2e-08 63.2 44 68.2
A08p10380 Brassica napus HOM05D004130 ORTHO05D004705 2.7e-08 62.0 46 69.6
Haze_27764 Corylus avellana HOM05D004130 ORTHO05D004705 7.8e-08 60.5 61 47.5
C05p40370 Brassica napus HOM05D004130 ORTHO05D004705 1.7e-07 59.3 42 66.7
BolC5t32777H Brassica oleracea HOM05D004130 ORTHO05D004705 1.7e-07 59.3 42 66.7
MBI05_g04121_MAGBIO Magnolia biondii HOM05D001811 ORTHO05D001738 8.7e-07 57.0 63 49.2
Zm00001eb172160 Zea mays HOM05D001360 ORTHO05D001231 1.5e-06 56.2 44 65.9
MD02G1087600 Malus domestica HOM05D004130 ORTHO05D004705 1.9e-06 55.8 40 57.5
CBR_g39376 Chara braunii HOM05D001964 ORTHO05D001879 2.5e-06 55.5 57 40.4
ATR0598G056 Amborella trichopoda HOM05D004130 ORTHO05D004705 3.3e-06 55.1 43 62.8
Cre14.g627800 Chlamydomonas reinhardtii HOM05D001964 ORTHO05D001879 3.3e-06 55.1 59 45.8


User provided reference genes

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