Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 3.9e-76 288.1 152 100.0
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 1.1e-46 190.3 152 71.1
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 3.2e-46 188.7 149 71.8
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 3.2e-46 188.7 152 71.1
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 5.5e-46 188.0 153 71.9
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 5.5e-46 188.0 153 71.9
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 5.5e-46 188.0 153 71.9
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 7.2e-46 187.6 151 69.5
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 1.2e-45 186.8 153 71.2
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.2e-45 186.8 152 70.4
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.6e-45 186.4 149 71.1
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.6e-45 186.4 149 71.1
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 2.1e-45 186.0 149 71.1
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 2.1e-45 186.0 152 69.1
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 2.1e-45 186.0 152 70.4
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 2.7e-45 185.7 149 71.1
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 2.7e-45 185.7 149 70.5
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 3.6e-45 185.3 149 71.1
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 3.6e-45 185.3 151 68.9
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 3.6e-45 185.3 149 70.5
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 6.1e-45 184.5 153 70.6
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 6.1e-45 184.5 152 68.4
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 7.9e-45 184.1 152 67.8
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 7.9e-45 184.1 152 69.1
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 7.9e-45 184.1 152 69.7
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 1.0e-44 183.7 154 69.5
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 1.0e-44 183.7 153 71.2
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.0e-44 183.7 152 69.1
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 1.0e-44 183.7 152 68.4
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 1.4e-44 183.3 152 68.4
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 1.4e-44 183.3 152 68.4
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.8e-44 183.0 152 67.8
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.8e-44 183.0 152 67.8
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 1.8e-44 183.0 152 68.4
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 1.8e-44 183.0 151 68.9
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.8e-44 183.0 152 67.8
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 1.8e-44 183.0 152 69.7
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 2.3e-44 182.6 149 70.5
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 2.3e-44 182.6 151 68.9
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 2.3e-44 182.6 151 68.9
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 2.3e-44 182.6 152 67.8
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 3.0e-44 182.2 152 69.1
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 3.9e-44 181.8 152 67.8
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 3.9e-44 181.8 158 67.7
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 3.9e-44 181.8 151 69.5
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 5.2e-44 181.4 151 68.9
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 5.2e-44 181.4 152 67.8
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 5.2e-44 181.4 152 67.8
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 5.2e-44 181.4 152 69.1
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 5.2e-44 181.4 152 68.4
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 5.2e-44 181.4 152 68.4
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 5.2e-44 181.4 149 69.1
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 6.7e-44 181.0 152 67.1
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 6.7e-44 181.0 152 67.1
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 6.7e-44 181.0 152 68.4
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 6.7e-44 181.0 152 67.8
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 8.8e-44 180.6 152 67.8
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 8.8e-44 180.6 152 67.1
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 8.8e-44 180.6 152 67.1
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 8.8e-44 180.6 149 69.1
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 1.1e-43 180.3 149 67.8
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.1e-43 180.3 153 68.6
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 1.1e-43 180.3 149 69.8
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 1.5e-43 179.9 152 66.4
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 1.5e-43 179.9 152 66.4
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 1.5e-43 179.9 152 65.8
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 1.5e-43 179.9 149 69.1
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-43 179.9 154 68.2
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 1.5e-43 179.9 152 67.8
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.5e-43 179.9 153 68.6
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.5e-43 179.9 153 68.6
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 1.5e-43 179.9 149 69.8
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.5e-43 179.9 152 68.4
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 3.3e-43 178.7 152 67.1
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 3.3e-43 178.7 151 66.9
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 3.3e-43 178.7 152 67.8
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 3.3e-43 178.7 149 67.1
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 3.3e-43 178.7 152 67.8
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 4.4e-43 178.3 151 66.9
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 4.4e-43 178.3 151 66.9
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 5.7e-43 177.9 149 67.1
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 7.4e-43 177.6 152 65.8
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 9.7e-43 177.2 149 68.5
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 9.7e-43 177.2 149 66.4
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 1.3e-42 176.8 149 67.8
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.3e-42 176.8 151 66.2
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 1.3e-42 176.8 152 65.8
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 1.3e-42 176.8 149 67.1
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 1.3e-42 176.8 152 65.8
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 1.3e-42 176.8 152 66.4
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 1.3e-42 176.8 152 66.4
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 2.2e-42 176.0 154 66.9
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 2.2e-42 176.0 151 66.9
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 2.2e-42 176.0 152 65.8
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 2.2e-42 176.0 151 66.9
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 2.8e-42 175.6 153 65.4
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 2.8e-42 175.6 150 68.0
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 2.8e-42 175.6 152 65.1
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 3.7e-42 175.3 149 67.8
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 3.7e-42 175.3 147 67.3
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 3.7e-42 175.3 149 67.1
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 4.8e-42 174.9 149 69.1
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 6.3e-42 174.5 152 64.5
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 6.3e-42 174.5 147 66.0
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 8.2e-42 174.1 149 67.8
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 8.2e-42 174.1 173 65.9
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 8.2e-42 174.1 149 67.1
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.1e-41 173.7 149 66.4
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.1e-41 173.7 149 65.8
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 1.1e-41 173.7 146 67.8
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 1.4e-41 173.3 151 65.6
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.4e-41 172.6 149 67.8
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.4e-41 172.6 149 67.8
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 2.4e-41 172.6 149 67.8
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 2.4e-41 172.6 149 67.1
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 5.3e-41 171.4 152 63.8
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 9.1e-41 170.6 152 61.8
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 2.0e-40 169.5 146 65.8
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 2.0e-40 169.5 152 63.8
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 2.0e-40 169.5 147 65.3
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 1.3e-39 166.8 141 68.1
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 1.3e-39 166.8 162 61.1
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 1.7e-39 166.4 144 66.7
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 1.7e-39 166.4 149 63.8
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 6.5e-39 164.5 149 63.1
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 8.5e-39 164.1 146 64.4
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 5.5e-38 161.4 152 61.2
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 5.5e-38 161.4 145 62.1
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 2.7e-37 159.1 148 59.5
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 2.0e-35 152.9 149 55.0
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 1.8e-33 146.4 145 57.2
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 9.1e-33 144.1 236 43.2
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 5.9e-32 141.4 125 62.4
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 1.7e-31 139.8 77 85.7
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 2.2e-31 139.4 74 93.2
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 3.8e-31 138.7 124 63.7
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 1.5e-30 136.7 124 65.3
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 1.9e-30 136.3 77 88.3
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.5e-30 136.0 153 59.5
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 2.1e-29 132.9 67 97.0
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 3.0e-28 129.0 127 58.3
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 6.8e-28 127.9 124 60.5
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 8.8e-28 127.5 124 59.7
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.5e-27 126.7 125 60.0
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 4.4e-27 125.2 141 55.3
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 4.4e-27 125.2 141 55.3
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 4.4e-27 125.2 138 56.5
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 1.7e-26 123.2 121 61.2
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 7.0e-25 117.9 71 77.5
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 2.1e-21 106.3 109 60.6
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 6.1e-21 104.8 109 58.7
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 1.4e-20 103.6 141 38.3
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 6.8e-20 101.3 119 53.8
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 8.3e-18 94.4 122 50.8
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 2.4e-17 92.8 108 52.8
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 2.7e-16 89.4 140 47.1
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 4.5e-16 88.6 59 78.0
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 1.9e-14 83.2 107 47.7
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 7.0e-09 64.7 44 77.3
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 1.2e-08 63.9 44 75.0
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 5.9e-08 61.6 44 72.7
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 5.9e-08 61.6 44 72.7
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 1.9e-06 56.6 43 72.1
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 2.5e-06 56.2 43 69.8


User provided reference genes

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