Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 3.3e-170 601.7 313 100.0
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 6.3e-113 411.4 313 70.0
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 5.9e-87 325.1 316 60.1
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 6.2e-60 235.3 294 51.0
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 1.8e-51 207.2 319 41.4
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 9.9e-50 201.4 361 38.8
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 3.8e-49 199.5 368 38.9
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 1.4e-48 197.6 387 37.0
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 2.7e-47 193.4 315 41.0
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 2.3e-46 190.3 298 40.9
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 3.9e-46 189.5 330 38.8
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 6.6e-46 188.7 313 38.3
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 2.5e-45 186.8 313 38.7
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 5.6e-45 185.7 312 37.5
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 5.6e-45 185.7 300 39.7
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 1.6e-44 184.1 316 37.3
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 1.1e-43 181.4 303 39.3
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 9.0e-43 178.3 321 38.6
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 2.6e-42 176.8 324 37.0
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 4.5e-42 176.0 324 37.3
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 5.8e-42 175.6 309 37.9
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 7.6e-42 175.3 306 39.5
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 9.9e-42 174.9 306 39.5
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 9.9e-42 174.9 306 39.5
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 1.3e-41 174.5 318 37.1
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 1.7e-41 174.1 318 38.7
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 2.9e-41 173.3 309 35.9
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 3.8e-41 172.9 323 37.5
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 6.4e-41 172.2 323 37.2
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 8.4e-41 171.8 295 35.6
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 8.4e-41 171.8 322 36.6
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 1.4e-40 171.0 295 38.3
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.4e-40 170.2 316 36.1
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 2.4e-40 170.2 311 37.9
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 3.2e-40 169.9 309 37.5
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 3.2e-40 169.9 316 39.2
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 4.2e-40 169.5 328 38.7
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 5.4e-40 169.1 316 35.1
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 1.6e-39 167.5 308 35.4
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 1.6e-39 167.5 302 37.7
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 2.1e-39 167.2 255 43.5
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 3.5e-39 166.4 334 33.5
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 6.0e-39 165.6 314 37.3
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 5.1e-38 162.5 321 36.8
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 1.9e-37 160.6 327 35.5
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 1.9e-37 160.6 309 36.9
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 5.6e-37 159.1 342 34.2
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 7.4e-37 158.7 315 33.7
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 2.8e-36 156.8 302 36.4
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 3.7e-36 156.4 347 36.6
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 8.1e-36 155.2 340 35.9
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 8.1e-36 155.2 352 33.8
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 9.0e-35 151.8 307 34.5
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 1.2e-34 151.4 318 37.1
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 1.5e-34 151.0 362 35.4
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.6e-34 150.2 297 36.4
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 3.4e-34 149.8 295 36.6
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.7e-33 147.5 372 32.8
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 5.1e-30 136.0 353 31.4
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 8.7e-30 135.2 299 36.8
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 1.5e-29 134.4 308 33.1
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 1.5e-29 134.4 302 32.5
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 1.9e-29 134.0 315 32.1
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 1.8e-27 127.5 298 33.9
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 3.1e-27 126.7 299 34.8
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 2.0e-26 124.0 206 41.3
Sc03g0007220 Simmondsia chinensis HOM05D006554 ORTHO05D008778 7.6e-26 122.1 181 43.1
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 1.3e-25 121.3 303 31.4
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 6.5e-25 119.0 303 30.4
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 9.3e-24 115.2 102 56.9
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 2.1e-23 114.0 310 30.6
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 7.9e-23 112.1 277 34.3
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 7.9e-23 112.1 289 30.4
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 1.8e-22 110.9 297 31.3
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 2.3e-22 110.5 147 43.5
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 2.3e-22 110.5 295 32.2
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 3.9e-22 109.8 133 47.4
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 5.1e-22 109.4 132 47.0
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 5.1e-22 109.4 132 47.0
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 6.7e-22 109.0 120 50.0
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 6.7e-22 109.0 294 29.3
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 8.7e-22 108.6 133 46.6
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 8.7e-22 108.6 120 48.3
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 3.3e-21 106.7 101 53.5
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 5.7e-21 105.9 117 52.1
Psat7g108920 Pisum sativum HOM05D006554 ORTHO05D008778 1.3e-20 104.8 231 34.2
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 2.2e-20 104.0 276 30.4
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 4.8e-20 102.8 132 45.5
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 1.4e-19 101.3 123 49.6
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 1.8e-19 100.9 310 28.7
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 3.1e-19 100.1 215 34.9
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 6.9e-19 99.0 230 35.7
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 2.6e-18 97.1 124 43.5
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 4.5e-18 96.3 123 48.0
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 2.2e-17 94.0 124 44.4
Atru.chr6.2450 Acer truncatum HOM05D006554 ORTHO05D008778 5.0e-17 92.8 199 37.7
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 1.4e-16 91.3 299 27.4
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 2.5e-16 90.5 309 28.5
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 4.2e-16 89.7 117 43.6
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 4.2e-16 89.7 116 45.7
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 9.4e-16 88.6 123 44.7
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 1.2e-15 88.2 123 44.7
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 1.2e-15 88.2 123 44.7
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 2.1e-15 87.4 116 44.8
Lj7A603G61 Lonicera japonica HOM05D006554 ORTHO05D008778 2.7e-15 87.0 168 35.7
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 6.1e-15 85.9 70 60.0
DCAR_002966 Daucus carota HOM05D006554 ORTHO05D008778 6.7e-14 82.4 229 33.2
FAN09G3965 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.5e-13 80.5 137 37.2
Ca_06565_v3 Cicer arietinum L. HOM05D006554 ORTHO05D008778 1.8e-11 74.3 173 32.4
SEGI_16878 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 3.1e-11 73.6 95 43.2
Eucgr.L02321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.0e-09 68.6 63 52.4
Cpa.g.sc130.63 Carica papaya HOM05D006554 ORTHO05D008778 1.3e-09 68.2 56 58.9
Eucgr.C03321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 2.2e-09 67.4 63 52.4
Eucgr.F01485 Eucalyptus grandis HOM05D006554 ORTHO05D008778 2.9e-09 67.0 77 46.8
SHI53794 Sapria himalayana HOM05D006554 ORTHO05D008778 3.8e-09 66.6 96 37.5
CBR_g49972 Chara braunii HOM05D000336 ORTHO05D002705 6.5e-09 65.9 108 35.2
VMungo1383G3169 Vigna mungo HOM05D006554 ORTHO05D008778 6.5e-09 65.9 142 29.6
COL.COLO4_29198 Corchorus olitorius HOM05D006554 ORTHO05D008778 1.1e-08 65.1 198 29.8
Mapoly0010s0030 Marchantia polymorpha HOM05D000336 ORTHO05D002705 1.4e-08 64.7 87 40.2
unitig_748.g8305 Utricularia gibba HOM05D000336 ORTHO05D002705 1.4e-08 64.7 94 38.3
TAR633G1495 Trochodendron aralioides HOM05D000336 ORTHO05D002705 7.2e-08 62.4 93 37.6
MSTRG.4151 Avicennia marina HOM05D000336 ORTHO05D002705 1.6e-07 61.2 107 30.8
Pp3c22_7000 Physcomitrium patens HOM05D000336 ORTHO05D002705 2.1e-07 60.8 93 36.6
Gorai.001G185000 Gossypium raimondii HOM05D004314 ORTHO05D018179 2.7e-07 60.5 101 35.6
Duzib106G1105 Durio zibethinus HOM05D000336 ORTHO05D002705 3.6e-07 60.1 122 32.8
unitig_32.g10850 Utricularia gibba HOM05D000336 ORTHO05D002705 3.6e-07 60.1 116 33.6
CiPaw.01G275200 Carya illinoinensis HOM05D000336 ORTHO05D002705 6.1e-07 59.3 101 35.6
Gorai.011G128000 Gossypium raimondii HOM05D006554 ORTHO05D008778 6.1e-07 59.3 101 35.6
MBI02_g34318_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D002705 7.9e-07 58.9 106 32.1
Prupe.2G216800 Prunus persica HOM05D000336 ORTHO05D002705 7.9e-07 58.9 108 33.3
Cc03_g05840 Coffea canephora HOM05D000336 ORTHO05D002705 1.0e-06 58.5 97 30.9
Gohir.D10G116100 Gossypium hirsutum HOM05D006554 ORTHO05D008778 1.0e-06 58.5 101 35.6
Gohir.A05G345700 Gossypium hirsutum HOM05D000336 ORTHO05D002705 1.4e-06 58.2 90 33.3
Gohir.D04G084800 Gossypium hirsutum HOM05D000336 ORTHO05D002705 1.4e-06 58.2 90 33.3
Gorai.012G094500 Gossypium raimondii HOM05D000336 ORTHO05D002705 1.4e-06 58.2 90 33.3
PSO210G7616 Papaver somniferum HOM05D006554 ORTHO05D008778 1.4e-06 58.2 105 37.1
SalBow3G1252 Salvia bowleyana HOM05D000336 ORTHO05D002705 1.4e-06 58.2 97 33.0
TAR636G0998 Trochodendron aralioides HOM05D000336 ORTHO05D002705 1.4e-06 58.2 83 37.3
Psat6g044640 Pisum sativum HOM05D000336 ORTHO05D002705 1.8e-06 57.8 83 33.7
BcaB02g09500 Brassica carinata HOM05D000336 ORTHO05D002705 2.3e-06 57.4 114 31.6
CAN.G220.42 Capsicum annuum HOM05D000336 ORTHO05D002705 2.3e-06 57.4 103 30.1
Lj2g0014987 Lotus japonicus HOM05D000336 ORTHO05D002705 2.3e-06 57.4 97 32.0
GSVIVG01016315001 Vitis vinifera HOM05D000336 ORTHO05D002705 2.3e-06 57.4 101 31.7
Gorai.011G241100 Gossypium raimondii HOM05D000336 ORTHO05D002705 3.0e-06 57.0 89 32.6
Lj4g0015179 Lotus japonicus HOM05D000336 ORTHO05D002705 3.0e-06 57.0 123 31.7
Pp3c21_9250 Physcomitrium patens HOM05D000336 ORTHO05D002705 3.0e-06 57.0 95 34.7
GSVIVG01034328001 Vitis vinifera HOM05D000336 ORTHO05D002705 3.0e-06 57.0 108 31.5
Medtr6g033375 Medicago truncatula HOM05D000336 ORTHO05D002705 3.9e-06 56.6 83 34.9
Pp3c18_15420 Physcomitrium patens HOM05D000336 ORTHO05D002705 3.9e-06 56.6 104 33.7
Psat2g031560 Pisum sativum HOM05D000336 ORTHO05D002705 3.9e-06 56.6 100 33.0
Sc05g0003330 Simmondsia chinensis HOM05D000336 ORTHO05D002705 3.9e-06 56.6 102 32.4
TWI60G1326 Tripterygium wilfordii HOM05D000336 ORTHO05D002705 3.9e-06 56.6 97 26.8
Gohir.D10G215500 Gossypium hirsutum HOM05D000336 ORTHO05D002705 5.1e-06 56.2 82 34.1
ClCG09G020540 Citrullus lanatus HOM05D000336 ORTHO05D002705 6.7e-06 55.8 108 30.6
Haze_16925 Corylus avellana HOM05D000336 ORTHO05D002705 6.7e-06 55.8 108 32.4
Thecc.10G069700 Theobroma cacao HOM05D000336 ORTHO05D002705 6.7e-06 55.8 122 31.1
Medtr2g437500 Medicago truncatula HOM05D000336 ORTHO05D002705 8.8e-06 55.5 103 30.1
Potri.010G219200 Populus trichocarpa HOM05D000336 ORTHO05D002705 8.8e-06 55.5 107 30.8


User provided reference genes

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