Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 9.3e-212 740.0 377 100.0
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 2.2e-152 542.7 373 75.9
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 4.7e-147 525.0 375 72.0
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.2e-123 447.2 263 83.3
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 6.0e-110 401.7 375 57.9
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 3.9e-109 399.1 332 61.1
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 1.5e-108 397.1 363 59.0
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 1.3e-107 394.0 364 57.4
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 1.4e-106 390.6 333 60.1
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 1.4e-106 390.6 364 56.9
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 1.8e-106 390.2 375 55.7
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.4e-106 389.8 364 56.6
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 2.0e-105 386.7 333 59.8
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 3.4e-105 386.0 375 57.3
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 7.6e-105 384.8 377 56.2
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 1.4e-103 380.6 370 55.1
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 1.9e-103 380.2 339 57.2
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 9.3e-103 377.9 336 57.7
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 1.6e-102 377.1 370 54.1
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 2.1e-102 376.7 377 54.6
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 4.6e-102 375.6 341 58.4
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.8e-101 373.6 359 56.8
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 6.7e-101 371.7 289 64.0
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 8.7e-101 371.3 373 54.7
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 1.9e-100 370.2 344 56.4
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 5.6e-100 368.6 328 56.1
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 5.6e-100 368.6 359 57.4
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 5.6e-100 368.6 334 55.4
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 1.3e-99 367.5 307 60.9
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 4.8e-99 365.5 300 59.3
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 8.1e-99 364.8 372 53.5
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 1.8e-98 363.6 368 53.5
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 3.1e-98 362.8 311 59.2
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 3.1e-98 362.8 327 58.4
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 4.0e-98 362.5 328 58.2
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 5.3e-98 362.1 325 56.6
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 6.9e-98 361.7 301 58.8
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 6.9e-98 361.7 301 58.8
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 6.9e-98 361.7 352 56.0
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 9.0e-98 361.3 289 61.6
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 4.5e-97 359.0 293 59.4
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 7.6e-97 358.2 362 55.2
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 7.6e-97 358.2 295 61.7
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 1.0e-96 357.8 407 49.1
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 1.0e-96 357.8 346 54.3
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 1.7e-96 357.1 362 55.5
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 2.2e-96 356.7 351 55.8
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 2.9e-96 356.3 382 53.9
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 2.9e-96 356.3 348 54.6
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 4.9e-96 355.5 301 58.1
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 6.5e-96 355.1 377 50.7
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 1.9e-95 353.6 341 53.1
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 2.5e-95 353.2 294 61.2
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 2.5e-95 353.2 362 54.7
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 4.2e-95 352.4 337 53.4
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 5.5e-95 352.1 300 58.0
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 2.7e-94 349.7 304 58.9
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 1.0e-93 347.8 276 63.4
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 2.3e-93 346.7 389 50.9
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 3.9e-93 345.9 300 59.0
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 5.1e-93 345.5 304 59.2
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 1.1e-92 344.4 286 59.8
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 1.1e-92 344.4 329 53.8
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 4.3e-92 342.4 374 54.0
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 5.7e-92 342.0 349 52.1
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 4.8e-91 339.0 301 58.5
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 4.8e-91 339.0 310 58.1
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 6.3e-91 338.6 299 57.9
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 1.1e-90 337.8 365 53.4
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.8e-90 337.0 374 53.2
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 2.4e-90 336.7 365 53.2
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 1.5e-89 334.0 329 53.2
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 2.0e-89 333.6 286 58.7
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 2.0e-89 333.6 325 53.8
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 1.0e-88 331.3 320 53.8
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 1.0e-88 331.3 320 53.8
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 5.0e-88 328.9 305 58.0
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 1.1e-87 327.8 311 55.0
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 1.4e-87 327.4 369 47.7
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 7.2e-87 325.1 354 48.6
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 6.1e-86 322.0 326 50.6
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 6.7e-85 318.5 282 56.4
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 6.7e-85 318.5 289 56.1
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 6.7e-85 318.5 311 54.7
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 1.1e-84 317.8 366 50.3
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 1.9e-84 317.0 362 48.3
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 9.7e-84 314.7 264 58.3
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 1.1e-82 311.2 374 45.5
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 4.2e-79 299.3 304 51.3
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 2.2e-75 287.0 292 53.8
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 1.5e-73 280.8 236 61.9
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 3.4e-73 279.6 323 47.1
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 3.4e-73 279.6 297 53.9
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 1.4e-71 274.2 294 51.0
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 2.1e-70 270.4 309 48.5
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 7.4e-68 261.9 292 47.9
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 3.7e-67 259.6 313 44.7
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 2.6e-65 253.4 318 45.3
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 1.0e-64 251.5 367 40.3
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 4.7e-62 242.7 235 53.2
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 1.4e-53 214.5 214 53.3
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 9.8e-52 208.4 300 41.7
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 1.1e-50 204.9 298 41.9
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 1.8e-50 204.1 300 41.3
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 2.0e-49 200.7 258 48.1
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 2.7e-49 200.3 167 62.9
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 7.7e-49 198.7 321 37.7
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 2.9e-48 196.8 291 41.9
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 2.9e-48 196.8 237 47.7
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 1.9e-47 194.1 215 48.8
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 2.8e-46 190.3 288 40.6
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 1.4e-42 177.9 179 50.8
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 5.0e-40 169.5 172 48.8
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 9.5e-39 165.2 304 36.2
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 8.0e-38 162.2 122 63.1
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 4.0e-37 159.8 118 60.2
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 3.4e-36 156.8 110 65.5
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 2.4e-34 150.6 166 46.4
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 9.2e-34 148.7 128 49.2
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 1.9e-26 124.4 228 36.8
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 6.0e-25 119.4 135 52.6
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 1.9e-23 114.4 175 38.9
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 9.5e-23 112.1 133 46.6
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 3.1e-21 107.1 73 67.1
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 3.4e-20 103.6 64 68.8
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 2.2e-19 100.9 113 45.1
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.4e-18 98.2 63 66.7
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 9.2e-18 95.5 53 75.5
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 1.2e-17 95.1 71 63.4
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.5e-15 88.2 71 59.2
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 1.6e-14 84.7 97 43.3
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 4.0e-13 80.1 96 43.8
Lj2A1074G31 Lonicera japonica HOM05D005912 ORTHO05D007329 9.9e-12 75.5 69 52.2
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 6.4e-11 72.8 52 59.6
SEGI_06824 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 4.6e-09 66.6 88 40.9


User provided reference genes

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