Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 2.7e-157 558.5 267 100.0
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.9e-143 511.9 287 84.3
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 8.5e-143 510.4 285 84.9
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 1.5e-126 456.4 268 79.1
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 6.1e-125 451.1 267 77.5
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 4.0e-124 448.4 257 79.8
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.5e-123 446.4 266 77.8
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.0e-123 446.0 267 77.9
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 5.7e-123 444.5 256 79.3
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 5.7e-123 444.5 266 78.2
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 1.3e-122 443.4 256 80.1
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 2.2e-122 442.6 265 75.8
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 8.3e-122 440.7 276 76.8
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 1.1e-121 440.3 263 76.0
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.4e-121 439.9 263 76.0
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 1.8e-121 439.5 262 76.7
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 1.8e-121 439.5 264 76.9
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 3.1e-121 438.7 263 76.4
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 7.0e-121 437.6 268 74.6
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 7.0e-121 437.6 268 74.6
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 7.0e-121 437.6 267 76.0
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 1.6e-120 436.4 264 76.9
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 2.7e-120 435.6 265 74.3
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 2.7e-120 435.6 267 74.5
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 5.9e-120 434.5 265 74.3
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 5.9e-120 434.5 263 75.3
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 1.0e-119 433.7 260 76.9
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.3e-119 433.3 304 71.7
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.3e-119 433.3 263 74.5
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.7e-119 433.0 268 76.5
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 2.3e-119 432.6 261 75.1
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 2.9e-119 432.2 267 75.3
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.8e-119 431.8 268 76.1
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 8.6e-119 430.6 263 76.8
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 1.1e-118 430.3 262 75.2
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 1.5e-118 429.9 267 74.9
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 1.9e-118 429.5 267 74.9
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 4.2e-118 428.3 270 73.0
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 7.2e-118 427.6 267 74.5
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 1.6e-117 426.4 265 74.7
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 2.1e-117 426.0 264 73.9
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 3.6e-117 425.2 265 74.3
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 4.7e-117 424.9 280 72.1
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 6.1e-117 424.5 267 74.5
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 8.0e-117 424.1 265 72.1
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 8.0e-117 424.1 257 76.3
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 8.0e-117 424.1 264 75.4
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 8.0e-117 424.1 267 73.8
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 1.0e-116 423.7 260 73.5
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 1.0e-116 423.7 280 71.8
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.0e-116 423.7 280 71.8
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 1.4e-116 423.3 265 74.7
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.8e-116 422.9 257 76.3
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 4.0e-116 421.8 263 73.0
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 4.0e-116 421.8 263 75.3
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 6.8e-116 421.0 262 73.3
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 6.8e-116 421.0 263 72.6
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 8.9e-116 420.6 266 74.1
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 1.2e-115 420.2 272 72.1
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 1.2e-115 420.2 256 73.8
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 1.2e-115 420.2 263 71.9
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 1.5e-115 419.9 272 72.1
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.5e-115 419.9 271 74.5
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 2.0e-115 419.5 263 72.2
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 2.0e-115 419.5 272 72.1
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 2.6e-115 419.1 268 73.5
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 3.4e-115 418.7 271 71.6
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 4.4e-115 418.3 263 72.2
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 4.4e-115 418.3 263 74.5
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 5.7e-115 417.9 267 75.3
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 7.5e-115 417.5 254 76.0
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.3e-114 416.8 253 73.9
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.3e-114 416.8 334 64.1
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 1.7e-114 416.4 266 72.9
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.7e-114 415.2 260 73.5
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 4.9e-114 414.8 261 74.3
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 6.3e-114 414.5 272 71.0
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 6.3e-114 414.5 272 71.3
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 6.3e-114 414.5 263 73.0
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 1.8e-113 412.9 258 74.8
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.8e-113 412.9 268 72.4
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 3.2e-113 412.1 253 73.5
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 3.2e-113 412.1 272 70.2
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 4.1e-113 411.8 265 72.1
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 7.0e-113 411.0 260 71.2
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.2e-112 410.2 268 71.6
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.2e-112 410.2 256 73.4
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.7e-112 409.1 263 71.9
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 2.7e-112 409.1 263 71.5
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 4.6e-112 408.3 253 72.7
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 1.0e-111 407.1 262 69.5
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 3.3e-110 402.1 250 75.2
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 1.6e-109 399.8 266 71.8
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 6.2e-109 397.9 258 72.9
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 2.3e-108 396.0 262 69.8
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 6.8e-108 394.4 246 72.0
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 9.8e-107 390.6 287 63.1
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.3e-106 390.2 228 77.2
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 2.2e-106 389.4 258 69.8
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 2.2e-106 389.4 278 66.9
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 2.4e-105 386.0 271 68.3
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.2e-105 385.6 237 74.7
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 3.2e-105 385.6 271 69.4
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 1.6e-104 383.3 266 69.5
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 4.6e-104 381.7 266 67.3
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 4.6e-104 381.7 231 72.3
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 3.9e-103 378.6 242 71.5
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 3.3e-102 375.6 228 77.6
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 4.3e-102 375.2 231 71.0
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 7.3e-102 374.4 291 64.6
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 1.2e-101 373.6 260 68.1
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 6.2e-101 371.3 209 81.3
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 6.8e-100 367.9 226 74.8
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 1.5e-99 366.7 235 72.8
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 1.5e-99 366.7 217 77.4
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 3.9e-95 352.1 294 61.9
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 7.3e-94 347.8 247 62.3
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 3.6e-93 345.5 221 67.4
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 1.8e-92 343.2 250 61.6
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 4.0e-92 342.0 236 63.6
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 6.8e-92 341.3 193 78.2
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 3.2e-89 332.4 221 72.4
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 3.2e-89 332.4 223 65.0
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 5.4e-89 331.6 262 61.5
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 3.1e-84 315.8 231 63.6
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 2.4e-81 306.2 164 82.9
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 2.8e-77 292.7 221 57.5
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 4.8e-77 292.0 199 63.8
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 9.3e-73 277.7 167 76.6
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 1.1e-70 270.8 162 74.7
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.2e-66 256.5 163 74.8
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 4.3e-62 242.3 156 73.7
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.3e-61 240.7 138 79.0
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 4.9e-58 228.8 241 51.0
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.1e-52 209.5 119 80.7
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.4e-51 206.1 141 71.6
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.7e-50 203.8 212 52.8
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 8.8e-31 138.3 107 62.6
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.5e-27 126.3 78 78.2
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 5.5e-25 119.0 72 76.4
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 4.7e-24 115.9 67 68.7
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 5.2e-23 112.5 267 33.7
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 3.3e-22 109.8 81 65.4
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 9.7e-22 108.2 66 68.2
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 1.6e-19 100.9 54 81.5
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 1.7e-18 97.4 267 31.5
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 1.2e-16 91.3 65 64.6
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 4.4e-14 82.8 90 47.8
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 7.5e-14 82.0 82 51.2
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 2.8e-13 80.1 74 51.4
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 7.0e-12 75.5 71 53.5
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 2.0e-11 73.9 51 70.6
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 1.0e-10 71.6 43 65.1
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.7e-08 63.5 88 44.3
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 3.6e-08 63.2 57 56.1


User provided reference genes

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