Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 0.0e+00 1350.5 693 100.0
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 0.0e+00 1251.9 692 92.3
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 0.0e+00 1184.1 722 84.5
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 0.0e+00 1103.6 696 81.5
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 0.0e+00 1103.2 694 80.3
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 0.0e+00 1102.4 693 79.5
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 0.0e+00 1098.2 694 80.4
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 0.0e+00 1092.8 693 80.2
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 0.0e+00 1092.4 694 80.0
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 0.0e+00 1081.2 698 78.9
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1079.7 698 78.9
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 0.0e+00 1077.4 696 78.6
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 4.7e-312 1074.3 695 78.8
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 4.7e-312 1073.9 696 78.2
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 1.2e-310 1069.3 695 79.0
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 6.1e-310 1067.0 689 78.7
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 4.0e-309 1064.3 698 76.8
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 1.2e-308 1062.8 690 79.4
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 1.5e-308 1062.4 692 81.4
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 2.0e-308 1062.0 696 77.7
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 2.6e-308 1061.6 697 78.2
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 5.7e-308 1060.4 697 77.6
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 9.8e-308 1059.7 696 77.9
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 9.8e-308 1059.7 743 74.4
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 3.7e-307 1057.7 691 77.0
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 1.4e-306 1055.8 696 77.6
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 9.1e-306 1053.1 688 78.3
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 3.5e-305 1051.2 697 76.6
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 3.5e-305 1051.2 696 77.6
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 5.9e-305 1050.4 697 76.5
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 5.9e-305 1050.4 692 76.6
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 1.3e-304 1049.3 688 77.6
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 1.7e-304 1048.9 692 76.6
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 2.3e-304 1048.5 696 76.6
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 8.6e-304 1046.6 688 77.8
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 7.2e-303 1043.5 691 76.1
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 9.5e-303 1043.1 694 76.2
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 1.2e-302 1042.7 695 76.4
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 1.0e-301 1039.6 696 76.6
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 6.8e-301 1036.9 731 72.9
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 2.6e-300 1035.0 697 75.6
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 3.4e-300 1034.6 691 75.7
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 5.7e-300 1033.9 679 77.3
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 5.7e-300 1033.9 696 76.6
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 1.7e-299 1032.3 697 76.8
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 2.2e-299 1031.9 691 75.4
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 2.8e-299 1031.6 691 75.4
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 3.7e-299 1031.2 692 74.9
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 3.7e-299 1031.2 696 76.1
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 1.2e-297 1026.2 695 75.1
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 1.2e-297 1026.2 696 74.0
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 2.7e-297 1025.0 695 75.0
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 3.5e-297 1024.6 694 76.1
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 3.8e-296 1021.1 740 72.0
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 9.5e-295 1016.5 696 75.9
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 3.6e-294 1014.6 698 75.2
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 1.8e-293 1012.3 647 78.7
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 3.0e-293 1011.5 693 75.3
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 1.2e-292 1009.6 695 74.1
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 7.5e-292 1006.9 711 73.8
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 2.9e-291 1005.0 695 74.2
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 1.4e-290 1002.7 801 66.2
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 2.4e-290 1001.9 693 74.2
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 4.6e-289 997.7 695 73.5
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 6.0e-289 997.3 692 73.7
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 1.3e-288 996.1 692 73.4
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 2.5e-287 991.9 691 73.5
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 5.6e-287 990.7 692 73.3
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 9.5e-287 989.9 692 73.3
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 1.4e-285 986.1 691 72.9
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 5.2e-285 984.2 692 72.7
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 3.4e-284 981.5 690 72.8
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 9.8e-284 979.9 695 72.1
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 1.7e-283 979.2 692 72.0
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 1.7e-283 979.2 692 72.4
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 6.4e-283 977.2 694 72.6
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 1.4e-282 976.1 692 72.3
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 1.9e-282 975.7 692 72.3
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 2.1e-281 972.2 692 72.0
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 2.1e-281 972.2 692 72.0
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 7.8e-281 970.3 694 72.5
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 2.3e-277 958.7 692 71.2
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 5.2e-277 957.6 695 71.2
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 9.9e-276 953.4 692 71.1
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 1.1e-269 933.3 701 69.3
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 8.1e-262 907.1 554 82.7
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 6.2e-254 880.9 1201 45.3
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 4.0e-253 878.2 690 66.2
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 9.0e-245 850.5 720 61.8
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 1.8e-240 836.3 571 74.8
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 7.4e-239 830.9 783 59.8
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 2.9e-235 818.9 536 79.3
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 3.7e-230 802.0 723 57.8
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 5.0e-219 765.0 468 82.5
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 5.5e-218 761.5 511 75.0
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 1.9e-210 736.5 518 71.8
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 8.0e-209 731.1 700 57.4
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 9.7e-207 724.2 646 58.0
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 4.1e-189 665.6 418 78.9
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 5.4e-141 505.8 714 42.3
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 4.6e-140 502.7 708 41.9
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 3.9e-131 473.0 696 44.5
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 6.9e-128 462.2 703 39.1
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 4.6e-124 449.5 267 85.4
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 7.4e-122 442.2 696 43.5
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 3.7e-113 413.3 473 46.7
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 1.5e-111 407.9 275 75.6
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 2.1e-108 397.5 663 42.2
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 3.1e-104 383.6 232 82.8
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 1.2e-92 345.1 427 51.1
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 5.9e-87 326.2 678 36.0
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 1.1e-85 322.0 247 66.4
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 5.0e-78 296.6 222 68.0
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 2.1e-76 291.2 298 56.7
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 3.4e-74 283.9 203 76.8
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 2.7e-63 247.7 167 71.9
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 5.6e-45 186.8 143 72.0
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 5.6e-45 186.8 143 72.0
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 1.1e-40 172.6 101 84.2
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 1.2e-39 169.1 125 76.0
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 1.6e-28 132.1 114 56.1
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 8.4e-25 119.8 84 66.7
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 1.2e-23 115.9 215 38.1
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 2.2e-17 95.1 75 68.0
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 3.8e-17 94.4 64 78.1
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 1.1e-13 82.8 154 35.1


User provided reference genes

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