Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 0.0e+00 1108.2 571 100.0
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 3.8e-265 917.9 572 82.3
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 5.5e-264 914.1 574 80.7
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 7.6e-258 893.6 574 80.0
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 9.7e-253 876.7 572 79.4
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 7.7e-242 840.5 558 78.9
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 1.6e-218 763.1 574 68.5
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 8.5e-217 757.3 576 68.8
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 5.2e-214 748.0 575 68.3
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 1.2e-213 746.9 575 67.5
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 2.0e-213 746.1 577 67.2
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 4.8e-212 741.5 574 66.0
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 8.3e-212 740.7 577 66.9
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 7.0e-211 737.6 579 66.7
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 7.0e-211 737.6 575 67.1
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 2.0e-210 736.1 573 65.1
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 1.0e-209 733.8 550 69.8
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 3.8e-209 731.9 573 65.1
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 1.9e-208 729.6 576 65.6
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 3.3e-208 728.8 575 64.9
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 6.1e-207 724.5 576 65.5
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 8.0e-207 724.2 576 65.3
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 2.3e-206 722.6 576 64.9
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 3.0e-206 722.2 573 64.2
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 3.0e-206 722.2 574 63.9
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 3.0e-206 722.2 568 65.7
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 8.9e-206 720.7 575 64.5
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 1.2e-205 720.3 581 65.2
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 1.5e-205 719.9 581 65.6
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 2.0e-205 719.5 576 64.4
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 2.0e-205 719.5 580 65.2
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 2.6e-205 719.2 498 71.7
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 4.4e-205 718.4 581 65.7
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 5.7e-205 718.0 575 64.3
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 7.5e-205 717.6 537 68.7
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 7.5e-205 717.6 576 65.3
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 1.7e-204 716.5 577 65.7
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 3.7e-204 715.3 574 63.6
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 4.9e-204 714.9 576 64.9
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 4.9e-204 714.9 576 65.1
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 4.9e-204 714.9 576 63.9
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 6.3e-204 714.5 573 65.6
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 8.3e-204 714.1 497 71.2
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 8.3e-204 714.1 549 67.4
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 8.3e-204 714.1 578 65.6
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 8.3e-204 714.1 541 68.4
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.1e-203 713.8 576 65.1
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 1.1e-203 713.8 542 65.9
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.8e-203 713.0 549 67.2
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 1.8e-203 713.0 542 66.2
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 9.2e-203 710.7 504 69.4
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 1.6e-202 709.9 576 64.1
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 2.7e-202 709.1 577 64.6
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 4.5e-202 708.4 578 65.2
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 5.9e-202 708.0 578 65.1
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 5.9e-202 708.0 577 65.5
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.0e-201 707.2 577 65.3
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 1.0e-201 707.2 574 64.3
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.9e-201 705.7 578 64.9
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 1.1e-200 703.7 577 64.6
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.5e-200 703.4 577 64.8
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 1.9e-200 703.0 577 65.0
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 1.9e-200 703.0 560 64.8
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 4.3e-200 701.8 502 69.9
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 7.3e-200 701.0 574 63.1
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.6e-199 699.9 549 66.3
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 2.3e-198 696.0 577 64.3
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 4.0e-198 695.3 579 63.2
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 5.8e-197 691.4 579 61.5
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 7.5e-197 691.0 565 64.2
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.7e-196 689.9 503 69.4
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 2.9e-196 689.1 573 62.7
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 4.9e-196 688.3 581 64.2
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 8.3e-196 687.6 502 67.5
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 1.1e-195 687.2 576 63.2
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.4e-195 686.8 503 69.0
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 2.4e-195 686.0 575 62.4
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 5.4e-195 684.9 503 68.8
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 6.0e-194 681.4 550 63.6
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 7.8e-194 681.0 544 63.4
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 1.3e-193 680.2 580 61.6
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 8.6e-193 677.6 502 68.3
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 4.3e-192 675.2 503 67.0
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 5.6e-192 674.9 575 62.1
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 9.5e-192 674.1 572 62.2
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 1.2e-191 673.7 572 62.2
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 1.2e-191 673.7 570 61.9
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 2.1e-191 672.9 509 65.8
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 3.1e-190 669.1 572 62.1
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 4.9e-188 661.8 565 62.5
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 8.3e-188 661.0 587 60.1
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 2.4e-187 659.4 577 62.4
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 2.4e-187 659.4 571 60.8
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 3.2e-187 659.1 578 62.3
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 5.1e-185 651.7 573 60.7
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 8.6e-185 651.0 505 65.9
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 1.5e-184 650.2 520 62.9
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 7.3e-184 647.9 588 59.7
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 1.8e-182 643.3 588 59.7
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 1.8e-182 643.3 581 60.4
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 8.9e-182 641.0 547 61.4
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 8.9e-182 641.0 572 60.1
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 2.0e-181 639.8 575 60.3
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 2.0e-181 639.8 582 59.8
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 4.4e-181 638.6 429 74.1
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 1.1e-179 634.0 578 60.2
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 1.6e-178 630.2 538 62.5
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 1.0e-177 627.5 539 60.9
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 1.5e-176 623.6 518 63.5
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 1.9e-176 623.2 580 57.6
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 1.3e-172 610.5 503 62.6
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 2.2e-172 609.8 502 62.2
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 1.3e-167 594.0 424 70.3
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 2.6e-165 586.3 511 59.5
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 4.2e-163 578.9 430 66.5
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 3.0e-161 572.8 546 55.5
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 2.0e-157 560.1 351 76.6
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 3.2e-155 552.7 527 54.5
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 1.2e-154 550.8 382 69.1
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 4.8e-151 538.9 561 56.5
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 1.5e-144 517.3 503 57.3
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 8.4e-140 501.5 483 56.7
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.6e-135 487.3 551 47.4
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 2.4e-134 483.4 441 54.0
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 1.1e-120 438.0 532 45.9
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 1.0e-116 424.9 542 42.3
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 4.2e-115 419.5 258 76.0
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 1.6e-114 417.5 538 47.6
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 3.5e-109 399.8 479 50.1
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 2.7e-106 390.2 441 45.1
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 4.4e-96 356.3 502 44.8
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 1.8e-89 334.3 322 56.2
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 5.7e-88 329.3 306 52.9
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 1.6e-85 321.2 478 38.5
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 1.5e-72 278.1 376 45.7
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 4.9e-71 273.1 460 36.7
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 3.4e-64 250.4 326 40.2
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 2.3e-60 237.7 235 54.9
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 1.6e-53 214.9 580 33.1
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 1.3e-34 152.1 631 23.0
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 2.8e-34 151.0 231 41.6
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 1.1e-30 139.0 162 49.4
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 1.4e-14 85.5 92 55.4
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 3.3e-11 74.3 83 50.6
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 1.0e-07 62.8 53 66.0
Haze_07633 Corylus avellana HOM05D000453 ORTHO05D000387 5.0e-07 60.5 306 23.5


User provided reference genes

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