Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g11089 Beta vulgaris HOM05D002953 ORTHO05D003249 3.6e-138 495.0 262 100.0
Ah.11g048070 Amaranthus hybridus HOM05D002953 ORTHO05D003249 2.2e-87 326.2 267 66.7
AUR62008487 Chenopodium quinoa HOM05D002953 ORTHO05D003249 2.3e-84 316.2 263 68.1
Sc10g0009790 Simmondsia chinensis HOM05D002953 ORTHO05D003249 1.6e-32 144.1 219 42.5
Sed0013431 Sechium edule HOM05D002953 ORTHO05D003249 2.7e-32 143.3 279 38.0
GSVIVG01007915001 Vitis vinifera HOM05D002953 ORTHO05D003249 1.9e-30 137.1 229 39.3
ClCG04G011980 Citrullus lanatus HOM05D002953 ORTHO05D003249 3.3e-30 136.3 269 37.2
Actinidia19011 Actinidia chinensis HOM05D002953 ORTHO05D003249 4.3e-30 136.0 267 37.5
CsaV3_1G005800 Cucumis sativus L. HOM05D002953 ORTHO05D003249 5.2e-28 129.0 273 38.5
MELO3C002011.2 Cucumis melo HOM05D002953 ORTHO05D003249 4.4e-27 125.9 226 38.9
FvH4_5g14350 Fragaria vesca HOM05D002953 ORTHO05D003249 5.8e-27 125.6 239 35.6
Atru.chr9.285 Acer truncatum HOM05D002953 ORTHO05D003249 9.9e-27 124.8 227 37.4
CSS0035960 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 3.7e-26 122.9 275 36.0
DCAR_026019 Daucus carota HOM05D002953 ORTHO05D003249 3.7e-26 122.9 239 37.2
Prupe.5G200200 Prunus persica HOM05D002953 ORTHO05D003249 3.7e-26 122.9 233 36.9
MD06G1199500 Malus domestica HOM05D002953 ORTHO05D003249 4.9e-26 122.5 217 35.5
Lj1g0024895 Lotus japonicus HOM05D002953 ORTHO05D003249 6.4e-26 122.1 218 33.9
RcHm_v2.0_Chr7g0182351 Rosa chinensis HOM05D002953 ORTHO05D003249 1.1e-25 121.3 247 34.4
QL10p018596 Quercus lobata HOM05D002953 ORTHO05D003249 1.9e-25 120.6 296 33.8
Hma1.2p1_0060F.1_g033360 Hydrangea macrophylla HOM05D002953 ORTHO05D003249 2.4e-25 120.2 216 34.7
CARHR275030 Cardamine hirsuta HOM05D002953 ORTHO05D003249 1.2e-24 117.9 263 32.3
Glyma.06G199700 Glycine max HOM05D002953 ORTHO05D003249 1.2e-24 117.9 258 33.3
TAR622G0728 Trochodendron aralioides HOM05D002953 ORTHO05D003249 1.2e-24 117.9 284 35.9
Rhsim12G0152800 Rhododendron simsii HOM05D002953 ORTHO05D003249 1.6e-24 117.5 220 38.2
Duzib205G1659 Durio zibethinus HOM05D002953 ORTHO05D003249 2.1e-24 117.1 220 37.7
AL8G37940 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 3.5e-24 116.3 263 31.9
Psat5g198520 Pisum sativum HOM05D002953 ORTHO05D003249 4.6e-24 115.9 217 35.9
Medtr3g023650 Medicago truncatula HOM05D002953 ORTHO05D003249 7.8e-24 115.2 220 35.9
Sp2g24510 Schrenkiella parvula HOM05D002953 ORTHO05D003249 1.0e-23 114.8 269 32.7
Manes.14G083400 Manihot esculenta HOM05D002953 ORTHO05D003249 1.3e-23 114.4 240 34.6
Sed0010847 Sechium edule HOM05D002953 ORTHO05D003249 1.3e-23 114.4 255 35.3
Gohir.A12G180300 Gossypium hirsutum HOM05D002953 ORTHO05D003249 2.3e-23 113.6 226 35.4
THA.LOC104818328 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 2.3e-23 113.6 261 34.1
Rhsim12G0152900 Rhododendron simsii HOM05D002953 ORTHO05D003249 3.0e-23 113.2 220 37.7
CANSAT80G2766 Cannabis sativa HOM05D002953 ORTHO05D003249 3.9e-23 112.8 266 31.2
Haze_07674 Corylus avellana HOM05D002953 ORTHO05D003249 8.6e-23 111.7 216 34.7
Gohir.D12G183000 Gossypium hirsutum HOM05D002953 ORTHO05D003249 1.1e-22 111.3 230 35.2
Gorai.008G196300 Gossypium raimondii HOM05D002953 ORTHO05D003249 1.1e-22 111.3 230 35.2
CAN.G587.22 Capsicum annuum HOM05D002953 ORTHO05D003249 1.9e-22 110.5 215 35.8
Potri.015G049700 Populus trichocarpa HOM05D002953 ORTHO05D003249 1.9e-22 110.5 224 34.8
Ciclev10024374m.g Citrus clementina HOM05D002953 ORTHO05D003249 3.3e-22 109.8 225 37.8
SalBow5G1999 Salvia bowleyana HOM05D002953 ORTHO05D003249 3.3e-22 109.8 219 34.2
AT5G61280 Arabidopsis thaliana HOM05D002953 ORTHO05D003249 4.3e-22 109.4 263 31.6
Thecc.03G096500 Theobroma cacao HOM05D002953 ORTHO05D003249 4.3e-22 109.4 223 36.8
BcaC06g33225 Brassica carinata HOM05D002953 ORTHO05D003249 5.6e-22 109.0 223 32.7
Peaxi162Scf00013g00538 Petunia axillaris HOM05D002953 ORTHO05D003249 9.6e-22 108.2 215 34.4
COL.COLO4_36882 Corchorus olitorius HOM05D002953 ORTHO05D003249 1.2e-21 107.8 240 33.8
Cc00_g02220 Coffea canephora HOM05D002953 ORTHO05D003249 1.6e-21 107.5 214 35.5
Nitab4.5_0001688g0010 Nicotiana tabacum HOM05D002953 ORTHO05D003249 4.7e-21 105.9 215 33.5
Solyc06g069590.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 8.1e-21 105.1 215 34.9
Sopen06g026890 Solanum pennellii HOM05D002953 ORTHO05D003249 8.1e-21 105.1 215 34.4
CiPaw.11G049300 Carya illinoinensis HOM05D002953 ORTHO05D003249 1.1e-20 104.8 287 31.7
Nitab4.5_0006673g0090 Nicotiana tabacum HOM05D002953 ORTHO05D003249 1.8e-20 104.0 115 47.0
Oeu032216.1 Olea europaea HOM05D002953 ORTHO05D003249 3.1e-20 103.2 215 32.1
Nn4g23349 Nelumbo nucifera HOM05D002953 ORTHO05D003249 4.0e-20 102.8 322 30.1
Sabra15G0078200 Salix brachista HOM05D002953 ORTHO05D003249 5.2e-20 102.4 232 32.3
SGA_v2.0_scaffold28G11759 Striga asiatica HOM05D004749 ORTHO05D005995 6.8e-20 102.1 224 34.8
arahy.Tifrunner.gnm1.ann1.52HBJM Arachis hypogaea HOM05D002953 ORTHO05D003249 2.0e-19 100.5 245 33.5
arahy.Tifrunner.gnm1.ann1.K4MPXF Arachis hypogaea HOM05D002953 ORTHO05D003249 2.0e-19 100.5 239 33.9
TWI81G0838 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 2.0e-19 100.5 223 31.4
Gohir.D07G074100 Gossypium hirsutum HOM05D002953 ORTHO05D003249 2.6e-19 100.1 213 32.9
Gorai.001G078300 Gossypium raimondii HOM05D002953 ORTHO05D003249 2.6e-19 100.1 219 33.3
Migut.I00340 Erythranthe guttata HOM05D002953 ORTHO05D003249 4.4e-19 99.4 108 45.4
FAN18G4303 Fragaria x ananassa HOM05D000627 ORTHO05D000365 2.2e-18 97.1 222 33.8
Eucgr.B00564 Eucalyptus grandis HOM05D002953 ORTHO05D003249 3.8e-18 96.3 232 32.8
FAN13G1454 Fragaria x ananassa HOM05D000627 ORTHO05D000365 3.8e-18 96.3 217 34.1
PGR083G0095 Punica granatum HOM05D002953 ORTHO05D003249 6.4e-18 95.5 267 30.3
BcaC06g33224 Brassica carinata HOM05D002953 ORTHO05D000365 8.4e-18 95.1 213 31.9
Duzib068G0795 Durio zibethinus HOM05D002953 ORTHO05D003249 3.2e-17 93.2 106 44.3
Dinv38775 Davidia involucrata HOM05D000630 ORTHO05D000365 1.2e-16 91.3 186 39.2
FAN08G1545 Fragaria x ananassa HOM05D002953 ORTHO05D000365 1.2e-16 91.3 217 33.6
HanXRQChr02g0035641 Helianthus annuus HOM05D002953 ORTHO05D003249 1.2e-16 91.3 253 32.4
Nn3g17381 Nelumbo nucifera HOM05D002953 ORTHO05D003249 1.2e-16 91.3 268 30.6
TWI75G0656 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 1.6e-16 90.9 185 34.6
AUR62021606 Chenopodium quinoa HOM05D002953 ORTHO05D003249 6.0e-16 89.0 79 65.8
arahy.Tifrunner.gnm1.ann1.90GC30 Arachis hypogaea HOM05D002953 ORTHO05D003249 7.8e-16 88.6 269 28.3
ECA232G4309 Erigeron canadensis HOM05D002953 ORTHO05D003249 3.0e-15 86.7 252 31.3
TAR629G0224 Trochodendron aralioides HOM05D002953 ORTHO05D003249 5.1e-15 85.9 217 34.1
CDE10G0450 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 6.6e-15 85.5 274 29.9
Thhalv10004785m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 8.7e-15 85.1 273 30.8
MD14G1208100 Malus domestica HOM05D002953 ORTHO05D003249 8.7e-15 85.1 218 29.4
PSO478G1910 Papaver somniferum HOM05D002953 ORTHO05D003249 8.7e-15 85.1 109 41.3
CSS0004001 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 1.9e-14 84.0 276 28.3
Lalb_Chr13g0302991 Lupinus albus HOM05D002953 ORTHO05D003249 2.5e-14 83.6 270 30.4
Glyma.01G056000 Glycine max HOM05D002953 ORTHO05D003249 7.3e-14 82.0 232 30.2
Hund09847 Selenicereus undatus HOM05D002953 ORTHO05D003249 7.3e-14 82.0 160 43.8
Actinidia19918 Actinidia chinensis HOM05D002953 ORTHO05D003249 1.3e-13 81.3 310 27.4
TAR371G0440 Trochodendron aralioides HOM05D002953 ORTHO05D003249 1.3e-13 81.3 294 28.6
Ciclev10033969m.g Citrus clementina HOM05D002953 ORTHO05D003249 1.6e-13 80.9 114 39.5
Potri.010G160900 Populus trichocarpa HOM05D002953 ORTHO05D003249 2.1e-13 80.5 105 39.0
ECA246G1271 Erigeron canadensis HOM05D000773 ORTHO05D000588 2.8e-13 80.1 133 34.6
BcaC06g33164 Brassica carinata HOM05D002953 ORTHO05D003249 4.8e-13 79.3 221 29.4
Peaxi162Scf00314g00019 Petunia axillaris HOM05D002953 ORTHO05D003249 4.8e-13 79.3 267 27.0
COL.COLO4_27923 Corchorus olitorius HOM05D002953 ORTHO05D003249 8.1e-13 78.6 105 40.0
Sabra10G0122400 Salix brachista HOM05D002953 ORTHO05D003249 8.1e-13 78.6 316 27.5
Zm00001eb008420 Zea mays HOM05D002953 ORTHO05D003249 1.4e-12 77.8 106 36.8
Gohir.D02G128400 Gossypium hirsutum HOM05D002953 ORTHO05D003249 4.0e-12 76.3 106 38.7
Gorai.005G144100 Gossypium raimondii HOM05D002953 ORTHO05D003249 4.0e-12 76.3 106 38.7
Nitab4.5_0000334g0300 Nicotiana tabacum HOM05D000954 ORTHO05D000822 4.0e-12 76.3 84 41.7
HPP92_013438 Vanilla planifolia HOM05D002953 ORTHO05D003249 6.9e-12 75.5 290 26.9
QL03p071046 Quercus lobata HOM05D002953 ORTHO05D003249 9.0e-12 75.1 104 37.5
Gohir.A03G103200 Gossypium hirsutum HOM05D002953 ORTHO05D003249 1.2e-11 74.7 106 37.7
Psat7g135400 Pisum sativum HOM05D002953 ORTHO05D003249 1.2e-11 74.7 107 40.2
TPR.G34076 Trifolium pratense HOM05D002953 ORTHO05D003249 1.2e-11 74.7 107 38.3
Zm00001eb233330 Zea mays HOM05D002953 ORTHO05D003249 2.0e-11 73.9 106 34.9
Sopen04g001490 Solanum pennellii HOM05D002953 ORTHO05D003249 2.6e-11 73.6 185 26.5
Potri.008G093300 Populus trichocarpa HOM05D002953 ORTHO05D003249 3.4e-11 73.2 105 37.1
Sc11g0002310 Simmondsia chinensis HOM05D002953 ORTHO05D003249 3.4e-11 73.2 107 34.6
FAN22G1160 Fragaria x ananassa HOM05D000954 ORTHO05D003249 4.4e-11 72.8 106 33.0
C07p44950 Brassica napus HOM05D000627 ORTHO05D000365 5.8e-11 72.4 260 28.1
BolC7t45018H Brassica oleracea HOM05D000627 ORTHO05D000365 5.8e-11 72.4 260 28.1
Carub.0008s2196 Capsella rubella HOM05D002953 ORTHO05D003249 7.6e-11 72.0 270 28.1
Cpa.g.sc1.99 Carica papaya HOM05D002953 ORTHO05D003249 7.6e-11 72.0 275 28.0
Medtr4g082910 Medicago truncatula HOM05D002953 ORTHO05D003249 7.6e-11 72.0 107 39.3
Rhsim12G0076400 Rhododendron simsii HOM05D002953 ORTHO05D003249 1.3e-10 71.2 105 35.2
Ah.03g139130 Amaranthus hybridus HOM05D002953 ORTHO05D003249 1.7e-10 70.9 119 32.8
CARHR014290 Cardamine hirsuta HOM05D002953 ORTHO05D003249 1.7e-10 70.9 106 36.8
Lalb_Chr17g0341061 Lupinus albus HOM05D002953 ORTHO05D003249 2.2e-10 70.5 105 36.2
TAR374G0889 Trochodendron aralioides HOM05D000954 ORTHO05D000822 2.2e-10 70.5 301 27.2
Aqoxy3G00465 Aquilegia oxysepala HOM05D002953 ORTHO05D003249 2.9e-10 70.1 299 28.4
VMungo0251G2769 Vigna mungo HOM05D002953 ORTHO05D003249 2.9e-10 70.1 308 28.6
Lsat_1_v5_gn_4_110061 Lactuca sativa HOM05D002953 ORTHO05D003249 3.8e-10 69.7 89 41.6
Lj4g0014446 Lotus japonicus HOM05D002953 ORTHO05D003249 3.8e-10 69.7 107 37.4
Ca_18812_v3 Cicer arietinum L. HOM05D002953 ORTHO05D003249 4.9e-10 69.3 107 37.4
Lsat_1_v5_gn_3_56140 Lactuca sativa HOM05D002953 ORTHO05D003249 4.9e-10 69.3 179 27.9
VMungo1215G1853 Vigna mungo HOM05D002953 ORTHO05D003249 4.9e-10 69.3 237 28.3
Lj6C782G17 Lonicera japonica HOM05D002953 ORTHO05D003249 8.4e-10 68.6 105 37.1
PGR102G2110 Punica granatum HOM05D002953 ORTHO05D003249 8.4e-10 68.6 106 31.1
Sopen05g007380 Solanum pennellii HOM05D002953 ORTHO05D003249 8.4e-10 68.6 118 31.4
unitig_8.g3188 Utricularia gibba HOM05D002953 ORTHO05D003249 1.1e-09 68.2 259 25.9
Glyma.20G027100 Glycine max HOM05D002953 ORTHO05D003249 1.4e-09 67.8 286 27.3
Sp1g12040 Schrenkiella parvula HOM05D002953 ORTHO05D003249 1.4e-09 67.8 107 36.4
SGA_v2.0_scaffold16G07764 Striga asiatica HOM05D002953 ORTHO05D003249 1.4e-09 67.8 120 35.0
TPR.G24432 Trifolium pratense HOM05D002953 ORTHO05D003249 2.4e-09 67.0 105 36.2
CANSAT64G0943 Cannabis sativa HOM05D002953 ORTHO05D003249 3.2e-09 66.6 110 32.7
CDE10G0453 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 3.2e-09 66.6 106 34.9
BcaC05g25290 Brassica carinata HOM05D002953 ORTHO05D003249 4.2e-09 66.2 282 27.3
BraA03t13810Z Brassica rapa HOM05D000627 ORTHO05D000365 4.2e-09 66.2 263 25.9
CDE05G2801 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 4.2e-09 66.2 97 37.1
Solyc04g005470.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 4.2e-09 66.2 90 34.4
Eucgr.B03177 Eucalyptus grandis HOM05D002953 ORTHO05D003249 5.4e-09 65.9 106 32.1
Atru.chr11.1683 Acer truncatum HOM05D002953 ORTHO05D003249 7.1e-09 65.5 221 24.0
vmacro01327 Vaccinium macrocarpon HOM05D002953 ORTHO05D003249 7.1e-09 65.5 105 35.2
Thhalv10009533m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 9.3e-09 65.1 107 33.6
Glyma.17G076300 Glycine max HOM05D002953 ORTHO05D003249 9.3e-09 65.1 276 28.6
Zm00001eb400390 Zea mays HOM05D002953 ORTHO05D003249 9.3e-09 65.1 168 31.0
Zm00001eb225120 Zea mays HOM05D002953 ORTHO05D003249 1.2e-08 64.7 106 35.8
PSO017G2547 Papaver somniferum HOM05D002953 ORTHO05D003249 1.6e-08 64.3 109 34.9
Glyma.07G226700 Glycine max HOM05D002953 ORTHO05D003249 2.1e-08 63.9 278 26.3
HanXRQChr12g0375351 Helianthus annuus HOM05D002953 ORTHO05D003249 2.1e-08 63.9 299 25.8
Lsat_1_v5_gn_4_12001 Lactuca sativa HOM05D002953 ORTHO05D003249 2.1e-08 63.9 245 24.5
MD16G1063900 Malus domestica HOM05D002953 ORTHO05D003249 2.7e-08 63.5 107 29.9
FAN07G2390 Fragaria x ananassa HOM05D000954 ORTHO05D000822 4.6e-08 62.8 333 24.6
C06p40600 Brassica napus HOM05D002953 ORTHO05D003249 7.8e-08 62.0 104 33.7
CiPaw.05G127400 Carya illinoinensis HOM05D002953 ORTHO05D003249 7.8e-08 62.0 328 27.1
Phvul.002G168100 Phaseolus vulgaris HOM05D002953 ORTHO05D003249 7.8e-08 62.0 304 25.7
BolC6t39372H Brassica oleracea HOM05D002953 ORTHO05D003249 1.0e-07 61.6 104 33.7
DCAR_030027 Daucus carota HOM05D002953 ORTHO05D003249 1.0e-07 61.6 81 35.8
Medtr5g043690 Medicago truncatula HOM05D002953 ORTHO05D003249 1.0e-07 61.6 258 24.8
Sabra08G0070100 Salix brachista HOM05D002953 ORTHO05D003249 1.0e-07 61.6 106 34.0
AUR62007948 Chenopodium quinoa HOM05D002953 ORTHO05D003249 1.3e-07 61.2 132 32.6
Glyma.02G114300 Glycine max HOM05D002953 ORTHO05D003249 1.7e-07 60.8 254 26.0
BolC8t49262H Brassica oleracea HOM05D002953 ORTHO05D003249 2.3e-07 60.5 326 24.5
Sp5g24380 Schrenkiella parvula HOM05D002953 ORTHO05D003249 2.3e-07 60.5 105 30.5
FvH4_4g30432 Fragaria vesca HOM05D002953 ORTHO05D003249 3.0e-07 60.1 131 29.0
AUR62003129 Chenopodium quinoa HOM05D002953 ORTHO05D003249 6.6e-07 58.9 143 30.8
BcaC07g38708 Brassica carinata HOM05D002953 ORTHO05D003249 8.7e-07 58.5 320 24.7
A08p32200 Brassica napus HOM05D002953 ORTHO05D003249 8.7e-07 58.5 318 25.5
BraA08t35143Z Brassica rapa HOM05D002953 ORTHO05D003249 8.7e-07 58.5 318 25.5
Carub.0002s1592 Capsella rubella HOM05D002953 ORTHO05D003249 1.1e-06 58.2 118 28.8
AL2G28430 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 1.5e-06 57.8 112 30.4
C08p16380 Brassica napus HOM05D002953 ORTHO05D003249 1.5e-06 57.8 316 24.7
ECA234G3661 Erigeron canadensis HOM05D002953 ORTHO05D003249 1.5e-06 57.8 267 24.3
Nitab4.5_0004304g0070 Nicotiana tabacum HOM05D000954 ORTHO05D000822 3.3e-06 56.6 65 36.9
Haze_11930 Corylus avellana HOM05D002953 ORTHO05D003249 4.3e-06 56.2 309 25.2
TPR.G12280 Trifolium pratense HOM05D002953 ORTHO05D003249 4.3e-06 56.2 156 30.1
CARHR062210 Cardamine hirsuta HOM05D002953 ORTHO05D003249 5.6e-06 55.8 118 29.7
Nitab4.5_0002806g0030 Nicotiana tabacum HOM05D000001 ORTHO05D000003 5.6e-06 55.8 302 21.5
ClCG05G023850 Citrullus lanatus HOM05D002953 ORTHO05D003249 9.6e-06 55.1 291 23.7
Thhalv10019347m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 9.6e-06 55.1 101 29.7


User provided reference genes

Program Settings