Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 2.9e-157 558.5 289 100.0
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 3.9e-133 478.4 284 88.0
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 4.3e-132 474.9 284 87.7
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 4.9e-104 381.7 293 68.3
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 1.9e-103 379.8 289 68.2
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 3.2e-103 379.0 286 69.9
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 2.7e-102 375.9 290 68.6
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 1.0e-101 374.0 287 66.9
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 1.9e-100 369.8 273 70.7
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 1.9e-100 369.8 281 69.4
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 4.3e-100 368.6 243 77.0
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 4.3e-100 368.6 281 67.3
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 9.6e-100 367.5 290 66.9
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.3e-99 367.1 291 68.7
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 2.8e-99 365.9 243 76.1
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.1e-98 362.5 284 68.7
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 4.0e-98 362.1 289 67.1
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 4.0e-98 362.1 235 77.9
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 2.0e-97 359.8 236 75.0
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 2.0e-97 359.8 235 75.7
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 2.6e-97 359.4 254 70.5
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 2.6e-97 359.4 256 72.3
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.6e-97 359.4 286 65.4
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 2.6e-97 359.4 263 70.7
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 3.4e-97 359.0 254 70.5
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 3.4e-97 359.0 256 71.9
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 5.8e-97 358.2 284 65.8
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 7.6e-97 357.8 236 75.8
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 7.6e-97 357.8 292 66.4
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 1.7e-96 356.7 268 67.2
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 1.7e-96 356.7 267 68.5
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 2.2e-96 356.3 236 76.7
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.9e-96 355.9 284 65.1
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 4.9e-96 355.1 289 64.7
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 6.5e-96 354.8 230 77.4
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 6.5e-96 354.8 271 67.2
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 6.5e-96 354.8 246 75.2
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 8.4e-96 354.4 246 72.8
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 8.4e-96 354.4 233 78.1
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.1e-95 354.0 237 72.6
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.1e-95 354.0 286 64.0
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.1e-95 354.0 286 64.3
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 1.9e-95 353.2 287 64.1
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 2.5e-95 352.8 286 66.1
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 3.2e-95 352.4 261 70.5
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 4.2e-95 352.1 240 75.0
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 4.2e-95 352.1 255 72.9
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 4.2e-95 352.1 246 72.8
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 5.5e-95 351.7 229 76.4
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 5.5e-95 351.7 287 64.5
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 1.2e-94 350.5 284 66.9
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.1e-94 349.7 246 71.5
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.1e-94 349.7 290 64.8
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 2.1e-94 349.7 267 67.0
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 4.6e-94 348.6 256 71.9
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 4.6e-94 348.6 254 71.7
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 6.0e-94 348.2 267 66.7
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 7.9e-94 347.8 269 65.1
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 7.9e-94 347.8 252 71.8
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.3e-93 347.1 288 65.6
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 1.8e-93 346.7 232 75.9
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 1.8e-93 346.7 284 64.1
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 1.8e-93 346.7 234 74.4
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 1.8e-93 346.7 261 67.0
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 1.8e-93 346.7 232 74.1
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.8e-93 346.7 233 75.5
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 3.0e-93 345.9 251 71.3
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 5.1e-93 345.1 286 63.6
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 8.7e-93 344.4 224 77.7
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 3.3e-92 342.4 204 86.3
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 1.3e-91 340.5 223 75.3
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 4.8e-91 338.6 234 73.5
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 6.3e-91 338.2 289 63.0
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 2.4e-90 336.3 288 60.1
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 3.1e-90 335.9 238 71.0
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 4.1e-90 335.5 241 69.7
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 4.1e-90 335.5 282 63.1
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 4.1e-90 335.5 282 62.1
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 5.3e-90 335.1 268 63.8
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 5.3e-90 335.1 230 73.9
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 9.0e-90 334.3 248 71.0
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 9.0e-90 334.3 235 73.6
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 1.2e-89 334.0 282 61.7
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 1.5e-89 333.6 284 62.7
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 1.5e-89 333.6 282 62.1
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.5e-89 333.6 231 71.4
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 4.5e-89 332.0 239 70.3
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.5e-89 332.0 233 73.4
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 5.9e-89 331.6 245 68.2
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 5.9e-89 331.6 245 68.2
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 7.7e-89 331.3 232 72.8
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 1.3e-88 330.5 272 63.2
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 1.3e-88 330.5 272 63.2
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 1.3e-88 330.5 272 63.2
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 2.9e-88 329.3 258 65.9
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 1.1e-87 327.4 250 67.6
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 1.1e-87 327.4 250 67.6
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 1.9e-87 326.6 231 71.4
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 2.5e-87 326.2 231 71.4
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 2.1e-86 323.2 277 62.8
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.7e-86 322.8 286 60.8
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 4.6e-86 322.0 286 60.8
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 4.6e-86 322.0 234 69.2
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.3e-85 319.7 279 60.2
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 9.7e-84 314.3 245 64.1
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 2.8e-83 312.8 263 62.7
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 3.7e-83 312.4 261 63.6
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 4.8e-83 312.0 232 65.1
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 6.3e-83 311.6 257 61.9
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.5e-81 307.0 215 72.6
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 5.0e-80 302.0 236 65.3
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 6.5e-80 301.6 204 75.0
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 8.5e-80 301.2 249 63.5
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 2.7e-78 296.2 199 72.9
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 8.8e-77 291.2 202 73.8
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 9.7e-76 287.7 254 59.4
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 9.7e-76 287.7 196 75.0
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 2.0e-73 280.0 199 70.4
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 7.7e-73 278.1 201 71.1
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 7.7e-73 278.1 232 62.1
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 1.0e-72 277.7 232 63.8
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 2.2e-72 276.6 232 66.4
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 3.8e-72 275.8 243 60.9
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 2.5e-71 273.1 200 69.5
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.2e-71 272.7 201 68.2
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 2.1e-70 270.0 235 61.3
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 2.3e-69 266.5 229 62.4
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.3e-69 266.5 229 63.3
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 1.1e-68 264.2 218 65.6
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.7e-64 250.4 167 76.0
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 5.5e-63 245.4 250 54.4
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 4.7e-62 242.3 191 68.1
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 9.7e-60 234.6 227 55.5
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 6.3e-59 231.9 145 77.2
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 5.3e-58 228.8 238 52.5
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.3e-56 224.2 286 46.2
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 1.0e-48 198.0 149 66.4
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.5e-47 194.1 135 69.6
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 1.6e-46 190.7 174 58.6
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 6.1e-46 188.7 146 65.8
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.2e-42 176.4 148 62.2
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.2e-41 174.5 148 62.2
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 8.9e-37 158.3 133 62.4
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 6.4e-35 152.1 138 58.7
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 6.4e-35 152.1 138 58.7
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.1e-34 151.4 158 55.7
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.2e-33 147.9 117 70.9
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 2.7e-33 146.7 125 60.0
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 4.9e-27 125.9 75 80.0
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.9e-26 124.0 75 78.7
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.4e-26 123.6 75 78.7
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 3.2e-26 123.2 75 78.7
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 4.1e-26 122.9 157 47.8
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.2e-25 121.3 75 76.0
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 3.3e-23 113.2 192 36.5
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.1e-21 108.2 75 72.0
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 9.9e-20 101.7 67 77.6
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 1.0e-16 91.7 66 74.2
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 1.0e-16 91.7 69 71.0
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.3e-16 91.3 64 73.4
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 9.6e-15 85.1 90 48.9
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 6.8e-13 79.0 64 67.2
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 2.6e-12 77.0 48 83.3
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 2.2e-11 73.9 44 77.3
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.9e-10 70.9 64 59.4
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 2.1e-09 67.4 44 68.2
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 3.0e-08 63.5 62 51.6
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 8.7e-08 62.0 76 44.7
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 7.3e-07 58.9 232 24.1


User provided reference genes

Program Settings