Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g11028 Beta vulgaris HOM05D007106 ORTHO05D007770 7.1e-47 190.3 97 100.0
Ah.11g048350 Amaranthus hybridus HOM05D007106 ORTHO05D007770 3.1e-18 95.1 100 63.0
Hund02644 Selenicereus undatus HOM05D007106 ORTHO05D007770 2.1e-14 82.4 101 48.5
COL.COLO4_08636 Corchorus olitorius HOM05D007106 ORTHO05D007770 1.3e-13 79.7 97 51.5
Gohir.D03G093700 Gossypium hirsutum HOM05D007106 ORTHO05D007770 8.7e-13 77.0 84 54.8
Gorai.003G097700 Gossypium raimondii HOM05D007106 ORTHO05D007770 8.7e-13 77.0 84 54.8
Gohir.A03G067200 Gossypium hirsutum HOM05D007106 ORTHO05D007770 1.1e-12 76.6 84 54.8
ClCG04G012220 Citrullus lanatus HOM05D007106 ORTHO05D007770 3.7e-11 71.6 99 44.4
Duzib205G0867 Durio zibethinus HOM05D007106 ORTHO05D007770 3.7e-11 71.6 97 47.4
Thecc.03G089800 Theobroma cacao HOM05D007106 ORTHO05D007770 3.7e-11 71.6 93 46.2
MD14G1201500 Malus domestica HOM05D007106 ORTHO05D007770 1.4e-10 69.7 97 45.4
MELO3C001986.2 Cucumis melo HOM05D007106 ORTHO05D007770 2.4e-10 68.9 99 45.5
Gohir.D07G070600 Gossypium hirsutum HOM05D007106 ORTHO05D007770 2.4e-10 68.9 97 43.3
Gorai.001G074500 Gossypium raimondii HOM05D007106 ORTHO05D007770 2.4e-10 68.9 97 43.3
Dinv38719 Davidia involucrata HOM05D007106 ORTHO05D007770 3.1e-10 68.6 101 45.5
Sed0016719 Sechium edule HOM05D007106 ORTHO05D007770 5.3e-10 67.8 94 47.9
vmacro17537 Vaccinium macrocarpon HOM05D007106 ORTHO05D007770 6.9e-10 67.4 93 46.2
TAR374G1315 Trochodendron aralioides HOM05D007106 ORTHO05D007770 9.0e-10 67.0 87 44.8
Sed0002642 Sechium edule HOM05D007106 ORTHO05D007770 1.2e-09 66.6 97 42.3
Gohir.A07G066100 Gossypium hirsutum HOM05D007106 ORTHO05D007770 2.0e-09 65.9 97 42.3
QL10p017125 Quercus lobata HOM05D007106 ORTHO05D007770 2.0e-09 65.9 78 47.4
Actinidia19038 Actinidia chinensis HOM05D007106 ORTHO05D007770 2.6e-09 65.5 89 42.7
Actinidia35002 Actinidia chinensis HOM05D007106 ORTHO05D007770 2.6e-09 65.5 91 46.2
CsaV3_1G005530 Cucumis sativus L. HOM05D007106 ORTHO05D007770 2.6e-09 65.5 99 45.5
TWI15G1028 Tripterygium wilfordii HOM05D007106 ORTHO05D007770 2.6e-09 65.5 100 43.0
CiPaw.11G045300 Carya illinoinensis HOM05D007106 ORTHO05D007770 3.4e-09 65.1 96 45.8
Prupe.5G194500 Prunus persica HOM05D007106 ORTHO05D007770 5.9e-09 64.3 100 49.0
CSS0012235 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 7.6e-09 63.9 95 44.2
CSS0040002 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 7.6e-09 63.9 95 44.2
CANSAT80G2807 Cannabis sativa HOM05D007106 ORTHO05D007770 7.6e-09 63.9 102 44.1
Manes.06G091700 Manihot esculenta HOM05D007106 ORTHO05D007770 1.0e-08 63.5 108 39.8
RcHm_v2.0_Chr7g0181551 Rosa chinensis HOM05D007106 ORTHO05D007770 1.0e-08 63.5 102 46.1
Ciclev10022899m.g Citrus clementina HOM05D007106 ORTHO05D007770 1.3e-08 63.2 98 43.9
GSVIVG01007993001 Vitis vinifera HOM05D007106 ORTHO05D007770 2.9e-08 62.0 83 49.4
Actinidia37624 Actinidia chinensis HOM05D007106 ORTHO05D007770 5.0e-08 61.2 80 46.2
Nn3g17263 Nelumbo nucifera HOM05D007106 ORTHO05D007770 5.0e-08 61.2 89 47.2
Cfa018934 Carpinus fangiana HOM05D007106 ORTHO05D007770 8.5e-08 60.5 91 44.0
MD06G1194400 Malus domestica HOM05D007106 ORTHO05D007770 8.5e-08 60.5 87 47.1
FvH4_5g14840 Fragaria vesca HOM05D007106 ORTHO05D007770 1.1e-07 60.1 105 41.9
FAN08G1525 Fragaria x ananassa HOM05D007106 ORTHO05D007770 1.1e-07 60.1 106 42.5
FAN18G2192 Fragaria x ananassa HOM05D007106 ORTHO05D007770 1.1e-07 60.1 105 41.9
Hma1.2p1_1936F.1_g308220 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 1.4e-07 59.7 81 44.4
Hma1.2p1_2516F.1_g323695 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 1.4e-07 59.7 81 44.4
vmacro16544 Vaccinium macrocarpon HOM05D007106 ORTHO05D007770 1.4e-07 59.7 83 44.6
CSS0008414 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 1.9e-07 59.3 84 46.4
Dinv16657 Davidia involucrata HOM05D007106 ORTHO05D007770 1.9e-07 59.3 78 41.0
Actinidia04893 Actinidia chinensis HOM05D007106 ORTHO05D007770 2.5e-07 58.9 82 43.9
Cc04_g16540 Coffea canephora HOM05D007106 ORTHO05D007770 5.5e-07 57.8 83 43.4
Eucgr.B00514 Eucalyptus grandis HOM05D007106 ORTHO05D007770 7.2e-07 57.4 90 37.8
Nitab4.5_0006000g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 9.3e-07 57.0 100 38.0
Rhsim12G0155900 Rhododendron simsii HOM05D007106 ORTHO05D007770 1.6e-06 56.2 83 47.0
Nitab4.5_0001128g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 2.1e-06 55.8 100 35.0
PGR083G1166 Punica granatum HOM05D007106 ORTHO05D007770 2.7e-06 55.5 91 38.5
Peaxi162Scf00274g00521 Petunia axillaris HOM05D007106 ORTHO05D007770 4.6e-06 54.7 105 36.2
Oeu022764.1 Olea europaea HOM05D007106 ORTHO05D007770 6.1e-06 54.3 85 40.0
Solyc03g115950.3 Solanum lycopersicum HOM05D007106 ORTHO05D007770 6.1e-06 54.3 104 41.3
Aqoxy3G03422 Aquilegia oxysepala HOM05D007106 ORTHO05D007770 7.9e-06 53.9 90 40.0
Carub.0005s1360 Capsella rubella HOM05D012999 ORTHO05D007770 7.9e-06 53.9 49 51.0
CARHR067730 Cardamine hirsuta HOM05D011715 ORTHO05D013688 7.9e-06 53.9 88 35.2
Phvul.003G189400 Phaseolus vulgaris HOM05D007106 ORTHO05D007770 7.9e-06 53.9 88 39.8
Potri.015G062300 Populus trichocarpa HOM05D007106 ORTHO05D007770 7.9e-06 53.9 98 41.8
PGSC0003DMG400019509 Solanum tuberosum HOM05D007106 ORTHO05D007770 7.9e-06 53.9 105 41.0


User provided reference genes

Program Settings