Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g10981 Beta vulgaris HOM05D005938 ORTHO05D007654 5.4e-153 544.3 273 100.0
Ah.02g113360 Amaranthus hybridus HOM05D005938 ORTHO05D007654 7.9e-128 460.7 269 83.6
AUR62021711 Chenopodium quinoa HOM05D005938 ORTHO05D007654 2.2e-122 442.6 264 83.7
Hund09357 Selenicereus undatus HOM05D005938 ORTHO05D007654 9.4e-121 437.2 262 80.9
AUR62008387 Chenopodium quinoa HOM05D005938 ORTHO05D007654 2.1e-120 436.0 264 82.6
Sc10g0009920 Simmondsia chinensis HOM05D005938 ORTHO05D007654 7.9e-120 434.1 270 78.1
CSS0017360 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 2.7e-112 409.1 271 73.8
CSS0040883 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 2.7e-112 409.1 271 73.8
Eucgr.A02632 Eucalyptus grandis HOM05D005938 ORTHO05D007654 3.6e-112 408.7 271 73.1
Atru.chr9.2268 Acer truncatum HOM05D005938 ORTHO05D007654 6.1e-112 407.9 265 76.6
Glyma.06G192800 Glycine max HOM05D005938 ORTHO05D007654 2.3e-111 406.0 269 73.6
TAR622G1433 Trochodendron aralioides HOM05D005938 ORTHO05D007654 3.9e-111 405.2 270 73.7
Lalb_Chr08g0235801 Lupinus albus HOM05D005938 ORTHO05D007654 1.5e-110 403.3 270 72.2
QL10p016543 Quercus lobata HOM05D005938 ORTHO05D007654 1.5e-110 403.3 269 73.6
Sed0010411 Sechium edule HOM05D005938 ORTHO05D007654 1.5e-110 403.3 267 75.3
Nn3g17204 Nelumbo nucifera HOM05D005938 ORTHO05D007654 2.0e-110 402.9 270 71.5
TWI15G1099 Tripterygium wilfordii HOM05D005938 ORTHO05D007654 2.0e-110 402.9 264 74.6
TAR374G0085 Trochodendron aralioides HOM05D005938 ORTHO05D007654 5.7e-110 401.4 270 72.6
COL.COLO4_24542 Corchorus olitorius HOM05D005938 ORTHO05D007654 7.4e-110 401.0 271 73.4
MD14G1198100 Malus domestica HOM05D005938 ORTHO05D007654 1.7e-109 399.8 272 72.4
Prupe.5G190900 Prunus persica HOM05D005938 ORTHO05D007654 6.3e-109 397.9 269 71.7
CiPaw.11G042800 Carya illinoinensis HOM05D005938 ORTHO05D007654 1.1e-108 397.1 260 73.8
GSVIVG01008024001 Vitis vinifera HOM05D005938 ORTHO05D007654 1.1e-108 397.1 261 73.6
Ca_13688_v3 Cicer arietinum L. HOM05D005938 ORTHO05D007654 1.4e-108 396.7 269 69.9
Lj1g0012745 Lotus japonicus HOM05D005938 ORTHO05D007654 1.8e-108 396.4 269 70.3
CANSAT80G1410 Cannabis sativa HOM05D005938 ORTHO05D007654 2.4e-108 396.0 264 73.1
Cpa.g.c30141.1 Carica papaya HOM05D005938 ORTHO05D007654 4.1e-108 395.2 262 74.0
Cfa018959 Carpinus fangiana HOM05D005938 ORTHO05D007654 4.1e-108 395.2 257 75.9
CsaV3_1G002270 Cucumis sativus L. HOM05D005938 ORTHO05D007654 4.1e-108 395.2 271 71.6
arahy.Tifrunner.gnm1.ann1.KGI6NM Arachis hypogaea HOM05D005938 ORTHO05D007654 7.0e-108 394.4 267 70.8
arahy.Tifrunner.gnm1.ann1.VVHC1U Arachis hypogaea HOM05D005938 ORTHO05D007654 2.0e-107 392.9 267 70.4
Actinidia34992 Actinidia chinensis HOM05D005938 ORTHO05D007654 2.6e-107 392.5 269 71.7
Rhsim12G0157100 Rhododendron simsii HOM05D005938 ORTHO05D007654 4.5e-107 391.7 271 72.3
Phvul.009G188150 Phaseolus vulgaris HOM05D005938 ORTHO05D007654 3.8e-106 388.7 271 70.5
Atru.BG.195.p Acer truncatum HOM05D005938 ORTHO05D007654 5.0e-106 388.3 254 77.2
Ciclev10021191m.g Citrus clementina HOM05D005938 ORTHO05D007654 5.0e-106 388.3 266 73.7
Gohir.D12G179280 Gossypium hirsutum HOM05D005938 ORTHO05D007654 6.5e-106 387.9 271 70.8
Lj9A462G75 Lonicera japonica HOM05D005938 ORTHO05D007654 1.4e-105 386.7 267 69.7
MELO3C017167.2 Cucumis melo HOM05D005938 ORTHO05D007654 1.2e-104 383.6 257 73.5
Potri.018G047400 Populus trichocarpa HOM05D005938 ORTHO05D007654 1.6e-104 383.3 262 73.7
FvH4_5g15170 Fragaria vesca HOM05D005938 ORTHO05D007654 1.4e-103 380.2 259 72.2
Gohir.A12G176500 Gossypium hirsutum HOM05D005938 ORTHO05D007654 1.4e-103 380.2 271 69.4
PGR083G1660 Punica granatum HOM05D005938 ORTHO05D007654 1.4e-103 380.2 267 68.9
TPR.G11812 Trifolium pratense HOM05D005938 ORTHO05D007654 1.4e-103 380.2 260 70.4
FAN08G1160 Fragaria x ananassa HOM05D005938 ORTHO05D007654 2.3e-103 379.4 260 71.2
MD06G1191700 Malus domestica HOM05D005938 ORTHO05D007654 2.3e-103 379.4 272 68.8
RcHm_v2.0_Chr7g0181011 Rosa chinensis HOM05D005938 ORTHO05D007654 2.3e-103 379.4 261 72.4
PGSC0003DMG400000598 Solanum tuberosum HOM05D005938 ORTHO05D007654 6.7e-103 377.9 265 69.8
FAN13G2109 Fragaria x ananassa HOM05D005938 ORTHO05D007654 2.0e-102 376.3 253 73.5
CAN.G407.117 Capsicum annuum HOM05D005938 ORTHO05D007654 7.4e-102 374.4 265 69.4
Solyc03g116330.3 Solanum lycopersicum HOM05D005938 ORTHO05D007654 7.4e-102 374.4 265 69.1
Sabra18G0045600 Salix brachista HOM05D005938 ORTHO05D007654 9.7e-102 374.0 268 70.5
Nitab4.5_0004103g0010 Nicotiana tabacum HOM05D005938 ORTHO05D007654 1.3e-101 373.6 265 69.4
CARHR067810 Cardamine hirsuta HOM05D005938 ORTHO05D007654 1.7e-101 373.2 260 71.2
PSO063G3647 Papaver somniferum HOM05D005938 ORTHO05D007654 1.7e-101 373.2 267 67.8
Cc04_g16920 Coffea canephora HOM05D005938 ORTHO05D007654 2.2e-101 372.9 262 69.5
FAN18G0122 Fragaria x ananassa HOM05D005938 ORTHO05D007654 2.8e-101 372.5 253 72.7
vmacro16554 Vaccinium macrocarpon HOM05D005938 ORTHO05D007654 6.3e-101 371.3 301 64.8
MSTRG.9633 Avicennia marina HOM05D005938 ORTHO05D007654 1.1e-100 370.5 263 66.9
HanXRQChr05g0158101 Helianthus annuus HOM05D005938 ORTHO05D007654 1.4e-100 370.2 262 71.0
Sp5g29710 Schrenkiella parvula HOM05D005938 ORTHO05D007654 9.1e-100 367.5 260 70.0
ClCG06G016260 Citrullus lanatus HOM05D005938 ORTHO05D007654 1.6e-99 366.7 265 71.3
Carub.0002s2133 Capsella rubella HOM05D005938 ORTHO05D007654 2.0e-99 366.3 260 68.5
AL2G34410 Arabidopsis lyrata HOM05D005938 ORTHO05D007654 2.6e-99 365.9 260 68.1
Thhalv10018904m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 4.5e-99 365.2 257 70.8
Oeu016169.1 Olea europaea HOM05D005938 ORTHO05D007654 4.5e-99 365.2 266 68.4
ECA246G4427 Erigeron canadensis HOM05D005938 ORTHO05D007654 5.9e-99 364.8 268 66.8
FAN04G0099 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.0e-98 364.0 250 72.8
Sopen03g035260 Solanum pennellii HOM05D005938 ORTHO05D007654 1.0e-98 364.0 254 69.7
SalBow7G2600 Salvia bowleyana HOM05D005938 ORTHO05D007654 1.3e-98 363.6 271 64.2
DCAR_021525 Daucus carota HOM05D005938 ORTHO05D007654 6.5e-98 361.3 280 66.1
Migut.D01830 Erythranthe guttata HOM05D005938 ORTHO05D007654 1.1e-97 360.5 265 66.8
A07p40340 Brassica napus HOM05D005938 ORTHO05D007654 1.5e-97 360.1 260 68.1
ATR0564G381 Amborella trichopoda HOM05D005938 ORTHO05D007654 4.2e-97 358.6 262 65.3
Peaxi162Scf00274g00846 Petunia axillaris HOM05D005938 ORTHO05D007654 5.5e-97 358.2 271 66.1
BcaC08g46886 Brassica carinata HOM05D005938 ORTHO05D007654 3.6e-96 355.5 249 69.9
Nitab4.5_0002257g0140 Nicotiana tabacum HOM05D005938 ORTHO05D007654 3.6e-96 355.5 293 62.1
BraA07t31575Z Brassica rapa HOM05D005938 ORTHO05D007654 2.3e-95 352.8 272 65.4
BcaC08g46988 Brassica carinata HOM05D005938 ORTHO05D007654 4.0e-95 352.1 249 67.9
CDE02G0021 Ceratophyllum demersum HOM05D005938 ORTHO05D007654 6.7e-95 351.3 258 65.5
Lsat_1_v5_gn_5_19401 Lactuca sativa HOM05D005938 ORTHO05D007654 4.4e-94 348.6 262 66.4
Os08g0171000 Oryza sativa ssp. japonica HOM05D005938 ORTHO05D007654 5.7e-94 348.2 260 63.1
unitig_744.g24387 Utricularia gibba HOM05D005938 ORTHO05D007654 5.7e-94 348.2 259 65.6
THA.LOC104812546 Tarenaya hassleriana HOM05D005938 ORTHO05D007654 1.3e-93 347.1 257 68.1
Duzib205G1012 Durio zibethinus HOM05D005938 ORTHO05D007654 3.1e-92 342.4 268 65.7
Psat5g187160 Pisum sativum HOM05D005938 ORTHO05D007654 1.2e-91 340.5 235 69.4
Gorai.008G192300 Gossypium raimondii HOM05D005938 ORTHO05D007654 1.3e-90 337.0 258 65.9
Aa31LG7G3570 Aethionema arabicum HOM05D005938 ORTHO05D007654 6.5e-90 334.7 254 65.0
Thecc.03G084300 Theobroma cacao HOM05D005938 ORTHO05D007654 1.5e-89 333.6 268 64.2
Manes.06G094000 Manihot esculenta HOM05D005938 ORTHO05D007654 3.2e-89 332.4 270 64.1
Aqoxy3G03351 Aquilegia oxysepala HOM05D005938 ORTHO05D007654 4.2e-89 332.0 251 66.5
SEGI_36934 Sequoiadendron giganteum HOM05D005938 ORTHO05D007654 5.5e-89 331.6 259 62.5
SGA_v2.0_scaffold114G31898 Striga asiatica HOM05D005938 ORTHO05D007654 8.0e-88 327.8 258 63.6
Dinv38693 Davidia involucrata HOM05D005938 ORTHO05D007654 1.8e-87 326.6 203 76.8
BcaC08g46884 Brassica carinata HOM05D005938 ORTHO05D007654 2.2e-85 319.7 278 60.1
SHI04241 Sapria himalayana HOM05D005938 ORTHO05D007654 4.2e-81 305.4 327 52.3
Mapoly0002s0073 Marchantia polymorpha HOM05D005938 ORTHO05D007654 2.8e-80 302.8 260 57.3
C06p48680 Brassica napus HOM05D005938 ORTHO05D007654 1.4e-79 300.4 195 73.8
Aa31LG4G4790 Aethionema arabicum HOM05D005938 ORTHO05D007654 1.3e-77 293.9 200 72.0
BolC6t39901H Brassica oleracea HOM05D005938 ORTHO05D007654 3.5e-75 285.8 205 70.2
Medtr0036s0320 Medicago truncatula HOM05D005938 ORTHO05D007654 7.3e-73 278.1 190 70.0
AT1G74530 Arabidopsis thaliana HOM05D005938 ORTHO05D007654 6.1e-72 275.0 199 69.8
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 1.2e-70 270.8 306 51.6
CSS0050188 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 3.4e-70 269.2 194 69.1
Pp3c17_15280 Physcomitrium patens HOM05D005938 ORTHO05D007654 1.0e-66 257.7 257 52.5
AagrBONN_evm.TU.Sc2ySwM_117.1670 Anthoceros agrestis HOM05D005938 ORTHO05D007654 2.8e-64 249.6 260 50.0
VMungo1309G2195 Vigna mungo HOM05D005938 ORTHO05D007654 4.0e-63 245.7 176 69.3
SMO270G0117 Selaginella moellendorffii HOM05D005938 ORTHO05D007654 6.8e-63 245.0 258 48.4
CBR_g66809 Chara braunii HOM05D005938 ORTHO05D007654 8.9e-63 244.6 277 44.8
Hma1.2p1_0735F.1_g210490 Hydrangea macrophylla HOM05D005938 ORTHO05D007654 5.8e-62 241.9 166 71.1
MBI02_g23681_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 1.0e-58 231.1 164 68.9
FAN10G3346 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.2e-56 224.2 146 76.0
Zm00001eb415000 Zea mays HOM05D005938 ORTHO05D007654 9.2e-52 208.0 176 61.9
Glyma.04G170700 Glycine max HOM05D005938 ORTHO05D007654 1.6e-48 197.2 121 76.9
arahy.Tifrunner.gnm1.ann1.518D86 Arachis hypogaea HOM05D005938 ORTHO05D007654 2.2e-37 160.2 145 55.9
MCO16G029 Micromonas commoda HOM05D005938 ORTHO05D007654 3.5e-35 152.9 279 34.4
FAN18G0131 Fragaria x ananassa HOM05D005938 ORTHO05D007654 7.3e-33 145.2 154 55.2
MBI15_g27838_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 5.8e-30 135.6 163 47.2
QL07p001114 Quercus lobata HOM05D005938 ORTHO05D007654 2.9e-29 133.3 169 47.3
MD17G1094500 Malus domestica HOM05D005938 ORTHO05D007654 4.6e-27 125.9 79 77.2
FAN01G1759 Fragaria x ananassa HOM05D005938 ORTHO05D007654 3.0e-26 123.2 83 73.5
Cre12.g513300 Chlamydomonas reinhardtii HOM05D005938 ORTHO05D007654 1.1e-25 121.3 205 36.1
Medtr3g040450 Medicago truncatula HOM05D005938 ORTHO05D007654 5.6e-25 119.0 82 67.1
VMungo0019G0001 Vigna mungo HOM05D005938 ORTHO05D007654 7.4e-25 118.6 79 72.2
Prupe.5G190800 Prunus persica HOM05D005938 ORTHO05D007654 4.8e-24 115.9 83 66.3
QL12p034017 Quercus lobata HOM05D000176 ORTHO05D000106 6.2e-24 115.5 67 77.6
QL02p071402 Quercus lobata HOM05D005938 ORTHO05D028155 1.1e-23 114.8 65 80.0
PRCOL_00003564 Prasinoderma coloniale HOM05D005938 ORTHO05D007654 1.4e-23 114.4 285 33.3
CSS0038577 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 2.4e-23 113.6 85 64.7
Thhalv10000377m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 1.2e-06 58.2 91 41.8
MCO06G261 Micromonas commoda HOM05D005938 ORTHO05D044307 2.0e-06 57.4 148 27.7


User provided reference genes

Program Settings