Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 3.1e-145 518.5 263 100.0
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 5.3e-89 331.6 264 68.6
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 2.3e-76 289.7 286 60.1
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 1.3e-74 283.9 178 77.5
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 2.2e-74 283.1 193 73.1
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 4.8e-74 282.0 180 76.7
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 4.8e-74 282.0 258 58.9
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 4.8e-74 282.0 191 71.2
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 6.3e-74 281.6 239 59.8
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 8.3e-74 281.2 177 74.0
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 8.3e-74 281.2 198 71.2
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 1.4e-73 280.4 191 70.2
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 1.4e-73 280.4 245 60.8
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 1.8e-73 280.0 177 76.8
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 4.1e-73 278.9 200 71.0
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 7.0e-73 278.1 272 55.1
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 7.0e-73 278.1 177 78.0
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 9.1e-73 277.7 178 74.7
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 9.1e-73 277.7 195 71.3
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 1.6e-72 276.9 192 71.9
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 2.0e-72 276.6 231 62.8
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 3.5e-72 275.8 196 69.4
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 3.5e-72 275.8 177 74.6
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 4.5e-72 275.4 167 79.0
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 1.0e-71 274.2 178 74.2
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 1.0e-71 274.2 177 75.1
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 1.7e-71 273.5 178 74.2
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 6.5e-71 271.6 242 59.9
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 8.6e-71 271.2 242 59.9
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 8.6e-71 271.2 179 74.9
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 1.5e-70 270.4 180 76.7
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 4.2e-70 268.9 177 73.4
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 5.5e-70 268.5 192 66.7
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 9.5e-70 267.7 222 63.1
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 9.5e-70 267.7 212 64.6
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 9.5e-70 267.7 193 69.4
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 1.2e-69 267.3 190 69.5
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 1.6e-69 266.9 216 63.0
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 2.8e-69 266.2 145 89.0
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 8.0e-69 264.6 177 72.3
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 8.0e-69 264.6 261 53.3
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.0e-68 264.2 193 68.4
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 1.0e-68 264.2 199 66.8
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 1.8e-68 263.5 222 62.2
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 2.3e-68 263.1 196 66.3
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 3.0e-68 262.7 193 69.9
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 4.0e-68 262.3 250 56.8
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 4.0e-68 262.3 193 70.5
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 1.5e-67 260.4 177 71.2
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 2.0e-67 260.0 191 69.6
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 2.6e-67 259.6 194 65.5
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 4.4e-67 258.8 171 71.3
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 5.7e-67 258.5 191 65.4
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 5.7e-67 258.5 191 69.1
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 7.5e-67 258.1 192 65.1
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 9.8e-67 257.7 197 63.5
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 1.3e-66 257.3 191 67.5
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 1.3e-66 257.3 166 75.3
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 1.7e-66 256.9 217 60.8
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 2.8e-66 256.1 200 63.5
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 4.9e-66 255.4 185 67.0
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 6.3e-66 255.0 178 68.5
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 6.3e-66 255.0 163 74.2
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 6.3e-66 255.0 198 65.2
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 8.3e-66 254.6 200 64.0
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 8.3e-66 254.6 200 64.0
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 8.3e-66 254.6 177 68.4
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 1.1e-65 254.2 186 67.2
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 1.1e-65 254.2 200 63.0
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 1.1e-65 254.2 186 67.2
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 1.1e-65 254.2 192 63.0
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 1.1e-65 254.2 177 68.9
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 1.4e-65 253.8 184 66.3
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 1.4e-65 253.8 177 67.8
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 2.4e-65 253.1 192 64.6
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 2.4e-65 253.1 192 64.1
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 3.1e-65 252.7 194 63.9
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 3.1e-65 252.7 199 63.3
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 4.1e-65 252.3 186 67.2
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 4.1e-65 252.3 217 60.4
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 5.4e-65 251.9 192 63.5
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 7.0e-65 251.5 185 67.0
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 9.2e-65 251.1 192 63.5
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 1.6e-64 250.4 192 63.5
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 1.6e-64 250.4 192 63.5
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 2.0e-64 250.0 186 66.1
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 2.0e-64 250.0 177 66.1
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 4.5e-64 248.8 242 57.0
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 5.9e-64 248.4 223 57.8
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 1.7e-63 246.9 177 63.8
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 2.3e-63 246.5 177 68.4
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 2.9e-63 246.1 178 68.5
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 5.0e-63 245.4 169 67.5
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 1.1e-62 244.2 248 52.4
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 5.6e-62 241.9 171 65.5
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 7.3e-62 241.5 188 63.3
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 7.3e-62 241.5 225 54.7
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 1.6e-61 240.4 248 52.0
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 4.7e-61 238.8 186 62.9
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 8.0e-61 238.0 177 63.3
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 1.4e-60 237.3 188 61.7
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 2.3e-60 236.5 153 74.5
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 4.0e-60 235.7 173 66.5
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 1.7e-58 230.3 293 46.4
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 4.9e-58 228.8 213 54.0
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 1.8e-57 226.9 206 58.7
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 2.7e-56 223.0 175 69.1
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 8.0e-53 211.5 241 53.9
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 4.9e-50 202.2 191 54.5
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 7.0e-49 198.4 131 75.6
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 7.0e-49 198.4 144 69.4
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 3.5e-48 196.1 151 66.2
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 6.6e-47 191.8 141 71.6
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 2.5e-46 189.9 155 56.1
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 1.2e-45 187.6 158 57.6
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 8.9e-44 181.4 129 71.3
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 2.6e-43 179.9 143 62.2
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 1.7e-42 177.2 145 56.6
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 6.4e-42 175.3 133 65.4
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 1.9e-41 173.7 142 59.9
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 1.9e-41 173.7 142 59.9
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 1.4e-36 157.5 95 75.8
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 3.4e-35 152.9 178 50.6
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 2.2e-34 150.2 82 86.6
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 6.4e-34 148.7 160 54.4
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 3.5e-24 116.3 78 73.1
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 5.6e-22 109.0 92 64.1
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 1.3e-21 107.8 103 58.3
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 7.6e-19 98.6 99 53.5
MCO14G168 Micromonas commoda HOM05D005796 ORTHO05D007054 3.0e-15 86.7 152 32.2
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 1.8e-12 77.4 50 72.0
Cre06.g295826 Chlamydomonas reinhardtii HOM05D005796 ORTHO05D007054 2.9e-10 70.1 129 31.0
Rhsim08G0160200 Rhododendron simsii HOM05D005796 ORTHO05D007054 3.2e-09 66.6 132 34.8
Cre11.g467679 Chlamydomonas reinhardtii HOM05D019738 ORTHO05D022279 1.5e-06 57.8 158 27.2
C09p08830 Brassica napus HOM05D005796 ORTHO05D007054 2.5e-06 57.0 36 66.7


User provided reference genes

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