Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g10847 Beta vulgaris HOM05D004454 ORTHO05D005462 1.6e-305 1052.4 696 100.0
AUR62008292 Chenopodium quinoa HOM05D004454 ORTHO05D005462 5.7e-207 724.9 696 79.0
AUR62031054 Chenopodium quinoa HOM05D004454 ORTHO05D005462 7.5e-199 698.0 696 77.4
Ah.11g046280 Amaranthus hybridus HOM05D004454 ORTHO05D005462 3.4e-191 672.5 696 75.3
Hund02707 Selenicereus undatus HOM05D004454 ORTHO05D005462 1.1e-178 630.9 679 73.8
QL02p081076 Quercus lobata HOM05D004454 ORTHO05D005462 1.5e-170 604.0 688 59.0
QL10p027831 Quercus lobata HOM05D004454 ORTHO05D005462 1.5e-170 604.0 688 59.0
vmacro16584 Vaccinium macrocarpon HOM05D004454 ORTHO05D005462 1.4e-168 597.4 694 60.2
Duzib084G0805 Durio zibethinus HOM05D004454 ORTHO05D005462 5.2e-168 595.5 688 60.5
CSS0019873 Camellia sinensis var. sinensis HOM05D004454 ORTHO05D005462 2.0e-167 593.6 689 58.3
CSS0024488 Camellia sinensis var. sinensis HOM05D004454 ORTHO05D005462 2.0e-167 593.6 689 58.3
Dinv02657 Davidia involucrata HOM05D004454 ORTHO05D005462 2.0e-167 593.6 689 58.2
Actinidia19078 Actinidia chinensis HOM05D004454 ORTHO05D005462 1.3e-166 590.9 688 60.3
Thecc.03G002900 Theobroma cacao HOM05D004454 ORTHO05D005462 3.8e-166 589.3 688 60.6
Ciclev10019469m.g Citrus clementina HOM05D004454 ORTHO05D005462 6.4e-166 588.6 689 60.5
Lj9A454G67 Lonicera japonica HOM05D004454 ORTHO05D005462 4.2e-165 585.9 690 57.4
Rhsim12G0161100 Rhododendron simsii HOM05D004454 ORTHO05D005462 4.2e-165 585.9 695 58.0
Eucgr.B00957 Eucalyptus grandis HOM05D004454 ORTHO05D005462 4.6e-164 582.4 689 59.9
QL10p013674 Quercus lobata HOM05D004454 ORTHO05D005462 4.6e-164 582.4 688 57.3
Hma1.2p1_0002F.1_g002910 Hydrangea macrophylla HOM05D004454 ORTHO05D005462 7.8e-164 581.6 689 56.9
Manes.14G071000 Manihot esculenta HOM05D004454 ORTHO05D005462 1.7e-163 580.5 688 57.1
CsaV3_1G008170 Cucumis sativus L. HOM05D004454 ORTHO05D005462 5.1e-163 578.9 689 56.9
MELO3C002234.2 Cucumis melo HOM05D004454 ORTHO05D005462 6.6e-163 578.6 689 56.9
Gorai.011G255100 Gossypium raimondii HOM05D004454 ORTHO05D005462 6.6e-163 578.6 688 59.3
ClCG01G014140 Citrullus lanatus HOM05D004454 ORTHO05D005462 8.7e-163 578.2 689 57.0
Eucgr.B00321 Eucalyptus grandis HOM05D004454 ORTHO05D005462 1.5e-162 577.4 689 57.6
Sed0026284 Sechium edule HOM05D004454 ORTHO05D005462 2.5e-162 576.6 689 57.2
TWI60G0736 Tripterygium wilfordii HOM05D004454 ORTHO05D005462 2.5e-162 576.6 689 58.3
Potri.012G075000 Populus trichocarpa HOM05D004454 ORTHO05D005462 3.3e-162 576.2 689 61.2
Gohir.A10G215100 Gossypium hirsutum HOM05D004454 ORTHO05D005462 7.3e-162 575.1 688 59.0
Gohir.D10G224100 Gossypium hirsutum HOM05D004454 ORTHO05D005462 7.3e-162 575.1 688 59.2
Nn4g22938 Nelumbo nucifera HOM05D004454 ORTHO05D005462 1.2e-161 574.3 689 59.2
Haze_07431 Corylus avellana HOM05D004454 ORTHO05D005462 2.8e-161 573.2 688 57.1
Glyma.11G026400 Glycine max HOM05D004454 ORTHO05D005462 2.4e-160 570.1 689 55.7
TAR374G1062 Trochodendron aralioides HOM05D004454 ORTHO05D005462 3.1e-160 569.7 689 56.2
VMungo1215G3435 Vigna mungo HOM05D004454 ORTHO05D005462 4.0e-160 569.3 689 56.0
Cfa019062 Carpinus fangiana HOM05D004454 ORTHO05D005462 5.3e-160 568.9 688 57.4
Prupe.5G180200 Prunus persica HOM05D004454 ORTHO05D005462 5.3e-160 568.9 689 56.3
Sabra12G0053400 Salix brachista HOM05D004454 ORTHO05D005462 6.9e-160 568.5 689 60.5
Cpa.g.sc35.32 Carica papaya HOM05D004454 ORTHO05D005462 3.4e-159 566.2 690 56.7
Ca_00529_v3 Cicer arietinum L. HOM05D004454 ORTHO05D005462 3.4e-159 566.2 688 60.9
Ca_26268_v3 Cicer arietinum L. HOM05D004454 ORTHO05D005462 9.9e-159 564.7 689 57.9
Lalb_Chr19g0133161 Lupinus albus HOM05D004454 ORTHO05D005462 9.9e-159 564.7 689 57.3
Lj3g0012006 Lotus japonicus HOM05D004454 ORTHO05D005462 1.3e-158 564.3 689 55.4
Phvul.002G154200 Phaseolus vulgaris HOM05D004454 ORTHO05D005462 8.4e-158 561.6 689 55.4
arahy.Tifrunner.gnm1.ann1.AQXS59 Arachis hypogaea HOM05D004454 ORTHO05D005462 7.1e-157 558.5 689 65.0
MD06G1182000 Malus domestica HOM05D004454 ORTHO05D005462 1.6e-156 557.4 690 56.4
MD14G1188000 Malus domestica HOM05D004454 ORTHO05D005462 1.6e-156 557.4 690 56.2
Sp5g13890 Schrenkiella parvula HOM05D004454 ORTHO05D005462 2.7e-156 556.6 691 55.0
Solyc03g113740.4 Solanum lycopersicum HOM05D004454 ORTHO05D005462 2.7e-156 556.6 693 56.1
Sopen03g032790 Solanum pennellii HOM05D004454 ORTHO05D005462 2.7e-156 556.6 693 56.1
TPR.G25821 Trifolium pratense HOM05D004454 ORTHO05D005462 3.5e-156 556.2 689 55.3
Lalb_Chr03g0031901 Lupinus albus HOM05D004454 ORTHO05D005462 4.6e-156 555.8 689 57.0
PSO832G1188 Papaver somniferum HOM05D004454 ORTHO05D005462 2.3e-155 553.5 692 55.6
Psat4g146120 Pisum sativum HOM05D004454 ORTHO05D005462 3.0e-155 553.1 689 54.6
PSO013G0161 Papaver somniferum HOM05D004454 ORTHO05D005462 3.9e-155 552.7 692 55.3
DCAR_026102 Daucus carota HOM05D004454 ORTHO05D005462 8.7e-155 551.6 691 55.7
RcHm_v2.0_Chr7g0179821 Rosa chinensis HOM05D004454 ORTHO05D005462 9.6e-154 548.1 689 54.0
CAN.G853.25 Capsicum annuum HOM05D004454 ORTHO05D005462 2.1e-153 547.0 693 56.0
Thhalv10010239m.g Eutrema salsugineum HOM05D004454 ORTHO05D005462 2.1e-153 547.0 691 54.1
MSTRG.9661 Avicennia marina HOM05D004454 ORTHO05D005462 4.8e-153 545.8 696 55.6
FAN04G1717 Fragaria x ananassa HOM05D004454 ORTHO05D005462 4.8e-153 545.8 689 54.0
AL5G27480 Arabidopsis lyrata HOM05D004454 ORTHO05D005462 6.2e-153 545.4 691 54.3
Migut.I00064 Erythranthe guttata HOM05D004454 ORTHO05D005462 1.4e-152 544.3 696 55.2
Oeu016330.1 Olea europaea HOM05D004454 ORTHO05D005462 1.4e-152 544.3 697 55.4
FAN13G0079 Fragaria x ananassa HOM05D004454 ORTHO05D005462 2.4e-152 543.5 689 54.0
Carub.0005s1425 Capsella rubella HOM05D004454 ORTHO05D005462 3.1e-152 543.1 691 54.1
BcaC09g49851 Brassica carinata HOM05D004454 ORTHO05D005462 5.3e-152 542.3 692 53.8
FvH4_5g16310 Fragaria vesca HOM05D004454 ORTHO05D005462 5.3e-152 542.3 689 53.8
Peaxi162Scf00017g02211 Petunia axillaris HOM05D004454 ORTHO05D005462 5.3e-152 542.3 695 54.7
SalBow5G4570 Salvia bowleyana HOM05D004454 ORTHO05D005462 5.3e-152 542.3 696 55.0
SGA_v2.0_scaffold467G52036 Striga asiatica HOM05D004454 ORTHO05D005462 6.9e-152 542.0 696 54.9
FAN08G3623 Fragaria x ananassa HOM05D004454 ORTHO05D005462 9.0e-152 541.6 689 53.8
BcaB05g22913 Brassica carinata HOM05D004454 ORTHO05D005462 1.2e-151 541.2 691 53.5
BolC1t03163H Brassica oleracea HOM05D004454 ORTHO05D005462 1.5e-151 540.8 692 53.6
FAN18G3350 Fragaria x ananassa HOM05D004454 ORTHO05D005462 2.0e-151 540.4 689 53.7
Lsat_1_v5_gn_5_17960 Lactuca sativa HOM05D004454 ORTHO05D005462 2.0e-151 540.4 683 53.1
C01p31930 Brassica napus HOM05D004454 ORTHO05D005462 2.6e-151 540.0 692 53.6
Sc04g0002160 Simmondsia chinensis HOM05D004454 ORTHO05D005462 3.4e-151 539.7 658 56.7
A01p25460 Brassica napus HOM05D004454 ORTHO05D005462 5.8e-151 538.9 692 53.6
BraA01t02468Z Brassica rapa HOM05D004454 ORTHO05D005462 7.6e-151 538.5 692 53.6
Medtr8g021140 Medicago truncatula HOM05D004454 ORTHO05D005462 7.6e-151 538.5 692 53.9
AT3G48150 Arabidopsis thaliana HOM05D004454 ORTHO05D005462 9.9e-151 538.1 691 53.7
Nn3g17037 Nelumbo nucifera HOM05D004454 ORTHO05D005462 6.4e-150 535.4 668 55.1
GSVIVG01000277001 Vitis vinifera HOM05D004454 ORTHO05D005462 8.4e-150 535.0 689 48.5
THA.LOC104799671 Tarenaya hassleriana HOM05D004454 ORTHO05D005462 1.4e-149 534.3 691 54.1
Medtr1g103750 Medicago truncatula HOM05D004454 ORTHO05D005462 7.1e-149 531.9 691 53.8
A06p19550 Brassica napus HOM05D004454 ORTHO05D005462 1.6e-148 530.8 691 53.0
BraA06t25035Z Brassica rapa HOM05D004454 ORTHO05D005462 1.6e-148 530.8 691 53.0
BcaB01g00842 Brassica carinata HOM05D004454 ORTHO05D005462 4.6e-148 529.3 691 53.0
C08p23030 Brassica napus HOM05D004454 ORTHO05D005462 1.8e-147 527.3 691 52.8
BolC8t49941H Brassica oleracea HOM05D004454 ORTHO05D005462 1.8e-147 527.3 691 52.8
BcaC07g39296 Brassica carinata HOM05D004454 ORTHO05D005462 5.1e-147 525.8 691 52.7
Glyma.12G016100 Glycine max HOM05D004454 ORTHO05D005462 1.1e-144 518.1 618 56.3
ECA246G3380 Erigeron canadensis HOM05D004454 ORTHO05D005462 5.3e-144 515.8 696 52.6
HanXRQChr05g0155441 Helianthus annuus HOM05D004454 ORTHO05D005462 9.0e-144 515.0 680 53.2
HanXRQChr14g0438801 Helianthus annuus HOM05D004454 ORTHO05D005462 1.7e-142 510.8 680 53.4
PGSC0003DMG400024579 Solanum tuberosum HOM05D004454 ORTHO05D005462 3.2e-141 506.5 693 53.5
Nitab4.5_0000026g0380 Nicotiana tabacum HOM05D004454 ORTHO05D005462 2.7e-140 503.4 698 52.9
MBI04_g34104_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 3.0e-139 500.0 695 51.2
Nitab4.5_0003577g0020 Nicotiana tabacum HOM05D004454 ORTHO05D005462 1.9e-138 497.3 698 52.4
unitig_0.g2210 Utricularia gibba HOM05D004454 ORTHO05D005462 9.0e-136 488.4 696 52.6
Aqoxy3G03142 Aquilegia oxysepala HOM05D004454 ORTHO05D005462 2.6e-135 486.9 690 51.2
Ciclev10004829m.g Citrus clementina HOM05D004454 ORTHO05D005462 4.9e-134 482.6 562 58.2
Aa31LG4G16750 Aethionema arabicum HOM05D004454 ORTHO05D005462 1.4e-133 481.1 663 52.8
DCAR_031479 Daucus carota HOM05D004454 ORTHO05D005462 1.6e-132 477.6 691 50.2
Cc04_g15930 Coffea canephora HOM05D004454 ORTHO05D005462 1.5e-130 471.1 697 51.2
MD13G1029000 Malus domestica HOM05D004454 ORTHO05D005462 9.7e-130 468.4 562 57.7
GSVIVG01022319001 Vitis vinifera HOM05D004454 ORTHO05D005462 1.1e-128 464.9 689 45.4
SHI46877 Sapria himalayana HOM05D004454 ORTHO05D005462 4.5e-127 459.5 603 54.6
MBI01_g40850_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 2.2e-126 457.2 615 43.4
ATR0057G034 Amborella trichopoda HOM05D004454 ORTHO05D005462 1.1e-125 454.9 689 49.2
Phvul.007G021500 Phaseolus vulgaris HOM05D004454 ORTHO05D005462 1.4e-125 454.5 562 56.4
Zm00001eb249420 Zea mays HOM05D004454 ORTHO05D005462 3.0e-123 446.8 708 47.5
Os02g0656300 Oryza sativa ssp. japonica HOM05D004454 ORTHO05D005462 2.5e-117 427.2 704 46.7
Actinidia34963 Actinidia chinensis HOM05D004454 ORTHO05D005462 2.6e-114 417.2 436 67.7
Eucgr.B00325 Eucalyptus grandis HOM05D004454 ORTHO05D005462 2.2e-113 414.1 440 65.2
arahy.Tifrunner.gnm1.ann1.7D20F1 Arachis hypogaea HOM05D004454 ORTHO05D005462 1.8e-112 411.0 446 78.5
CiPaw.12G022700 Carya illinoinensis HOM05D004454 ORTHO05D005462 4.1e-112 409.8 436 64.0
HPP92_012132 Vanilla planifolia HOM05D004454 ORTHO05D005462 2.6e-111 407.1 699 45.1
Glyma.01G216500 Glycine max HOM05D004454 ORTHO05D005462 7.7e-111 405.6 436 63.8
CDE04G0088 Ceratophyllum demersum HOM05D004454 ORTHO05D005462 5.0e-110 402.9 673 38.8
TAR629G2352 Trochodendron aralioides HOM05D004454 ORTHO05D005462 8.5e-110 402.1 436 62.2
CARHR156870 Cardamine hirsuta HOM05D004454 ORTHO05D005462 6.7e-107 392.5 446 60.1
MBI01_g33693_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 4.1e-104 383.3 707 37.1
SEGI_02939 Sequoiadendron giganteum HOM05D004454 ORTHO05D005462 1.8e-91 341.3 711 41.6
AagrBONN_evm.TU.Sc2ySwM_368.1566 Anthoceros agrestis HOM05D004454 ORTHO05D005462 1.9e-85 321.2 615 44.7
Mapoly0091s0003 Marchantia polymorpha HOM05D004454 ORTHO05D005462 5.5e-85 319.7 684 41.5
Pp3c11_17870 Physcomitrium patens HOM05D004454 ORTHO05D005462 3.5e-79 300.4 677 39.9
SMO147G0289 Selaginella moellendorffii HOM05D004454 ORTHO05D005462 4.3e-77 293.5 452 51.1
CDE12G0785 Ceratophyllum demersum HOM05D004454 ORTHO05D005462 8.6e-70 269.2 381 40.2
CBR_g45228 Chara braunii HOM05D004454 ORTHO05D005462 1.6e-68 265.0 559 45.8
MD17G1271900 Malus domestica HOM05D004454 ORTHO05D005462 7.1e-64 249.6 297 48.8
COL.COLO4_21447 Corchorus olitorius HOM05D000359 ORTHO05D000251 1.6e-60 238.4 662 33.8
Medtr8g447330 Medicago truncatula HOM05D004454 ORTHO05D005462 1.7e-57 228.4 616 31.3
Atru.chr9.2395 Acer truncatum HOM05D004454 ORTHO05D005462 3.9e-54 217.2 309 46.6
Atru.chr9.2393 Acer truncatum HOM05D004454 ORTHO05D005462 4.6e-47 193.7 127 71.7
MD17G1272000 Malus domestica HOM05D004454 ORTHO05D005462 9.6e-45 186.0 121 71.9
Glyma.01G216550 Glycine max HOM05D004454 ORTHO05D005462 1.8e-43 181.8 176 56.2
Os06g0679100 Oryza sativa ssp. japonica HOM05D004454 ORTHO05D005462 1.1e-40 172.6 123 65.0
MCO11G723 Micromonas commoda HOM05D004454 ORTHO05D005462 1.1e-37 162.5 628 34.1
COL.COLO4_19778 Corchorus olitorius HOM05D004454 ORTHO05D005462 1.8e-35 155.2 127 64.6
Dinv13132 Davidia involucrata HOM05D004454 ORTHO05D005462 6.4e-33 146.7 98 69.4
FAN21G3202 Fragaria x ananassa HOM05D004454 ORTHO05D035857 1.6e-28 132.1 121 56.2
FAN24G1390 Fragaria x ananassa HOM05D004454 ORTHO05D035857 2.1e-28 131.7 117 58.1
Dinv13133 Davidia involucrata HOM05D004454 ORTHO05D005462 6.9e-27 126.7 168 48.2
Cre16.g681578 Chlamydomonas reinhardtii HOM05D004454 ORTHO05D005462 4.9e-25 120.6 679 30.8
Atru.chr9.2394 Acer truncatum HOM05D004454 ORTHO05D005462 2.5e-24 118.2 76 76.3
TAR629G2581 Trochodendron aralioides HOM05D004454 ORTHO05D005462 3.0e-22 111.3 142 48.6
Gohir.A01G024750 Gossypium hirsutum HOM05D004454 ORTHO05D005462 3.9e-22 110.9 69 75.4
Cfa023754 Carpinus fangiana HOM05D004454 ORTHO05D005462 6.7e-22 110.2 306 28.1
COL.COLO4_19780 Corchorus olitorius HOM05D004454 ORTHO05D005462 1.9e-21 108.6 106 60.4
Glyma.11G109202 Glycine max HOM05D004454 ORTHO05D005462 2.6e-18 98.2 142 45.1
MBI01_g40849_MAGBIO Magnolia biondii HOM05D000031 ORTHO05D000030 2.9e-17 94.7 105 52.4
ATR0767G023 Amborella trichopoda HOM05D004454 ORTHO05D005462 5.1e-14 84.0 59 72.9
FAN16G3295 Fragaria x ananassa HOM05D004454 ORTHO05D035857 1.9e-13 82.0 154 37.0
FAN22G0042 Fragaria x ananassa HOM05D004454 ORTHO05D005462 3.7e-12 77.8 69 59.4
ATR0767G108 Amborella trichopoda HOM05D004454 ORTHO05D005462 9.0e-11 73.2 65 55.4
ATR0767G252 Amborella trichopoda HOM05D004454 ORTHO05D063599 5.1e-06 57.4 67 47.8


User provided reference genes

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