Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g10534 Beta vulgaris HOM05D002570 ORTHO05D002689 2.0e-49 198.7 96 100.0
AUR62032321 Chenopodium quinoa HOM05D002570 ORTHO05D002689 6.8e-34 147.1 98 75.5
Hund09510 Selenicereus undatus HOM05D002570 ORTHO05D002689 4.0e-26 121.3 94 63.8
Ah.11g050420 Amaranthus hybridus HOM05D002570 ORTHO05D002689 1.7e-16 89.4 66 69.7
Hund02836 Selenicereus undatus HOM05D002570 ORTHO05D002689 2.3e-13 79.0 58 62.1
Sc02g0007790 Simmondsia chinensis HOM05D002570 ORTHO05D002689 2.3e-13 79.0 88 47.7
Sc05g0001400 Simmondsia chinensis HOM05D002570 ORTHO05D002689 1.5e-12 76.3 76 50.0
Manes.18G044800 Manihot esculenta HOM05D002570 ORTHO05D002689 2.5e-12 75.5 79 49.4
Ciclev10002925m.g Citrus clementina HOM05D002570 ORTHO05D002689 1.1e-10 70.1 95 42.1
Duzib116G0240 Durio zibethinus HOM05D002570 ORTHO05D002689 1.4e-10 69.7 80 47.5
Lj2g0012585 Lotus japonicus HOM05D002570 ORTHO05D002689 1.8e-10 69.3 79 48.1
Manes.05G180500 Manihot esculenta HOM05D002570 ORTHO05D002689 1.8e-10 69.3 80 46.2
Medtr6g008680 Medicago truncatula HOM05D002570 ORTHO05D002689 4.0e-10 68.2 89 42.7
QL12p037631 Quercus lobata HOM05D002570 ORTHO05D002689 4.0e-10 68.2 80 48.8
Psat1g078440 Pisum sativum HOM05D002570 ORTHO05D002689 5.2e-10 67.8 80 43.8
Thecc.08G091100 Theobroma cacao HOM05D002570 ORTHO05D002689 5.2e-10 67.8 75 48.0
Gohir.A02G081500 Gossypium hirsutum HOM05D002570 ORTHO05D002689 8.9e-10 67.0 76 46.1
Gorai.005G099800 Gossypium raimondii HOM05D002570 ORTHO05D002689 8.9e-10 67.0 76 46.1
Gohir.D02G089132 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.2e-09 66.6 76 46.1
Psat5g308160 Pisum sativum HOM05D002570 ORTHO05D002689 1.2e-09 66.6 83 44.6
Sc15g0005580 Simmondsia chinensis HOM05D002570 ORTHO05D002689 1.2e-09 66.6 51 56.9
TAR381G0312 Trochodendron aralioides HOM05D002570 ORTHO05D002689 1.2e-09 66.6 76 47.4
MELO3C032377.2 Cucumis melo HOM05D002570 ORTHO05D002689 1.5e-09 66.2 67 50.7
Nn1g04609 Nelumbo nucifera HOM05D002570 ORTHO05D002689 2.0e-09 65.9 78 46.2
Sed0024363 Sechium edule HOM05D002570 ORTHO05D002689 2.6e-09 65.5 77 42.9
TPR.G32582 Trifolium pratense HOM05D002570 ORTHO05D002689 3.4e-09 65.1 80 41.2
CiPaw.07G176800 Carya illinoinensis HOM05D002570 ORTHO05D002689 4.4e-09 64.7 78 46.2
Duzib041G0717 Durio zibethinus HOM05D002570 ORTHO05D002689 7.6e-09 63.9 76 44.7
TAR376G0812 Trochodendron aralioides HOM05D002570 ORTHO05D002689 1.3e-08 63.2 77 42.9
arahy.Tifrunner.gnm1.ann1.N56UGC Arachis hypogaea HOM05D002570 ORTHO05D002689 2.2e-08 62.4 84 36.9
Atru.chr13.811 Acer truncatum HOM05D002570 ORTHO05D002689 3.8e-08 61.6 81 40.7
PSO170G3310 Papaver somniferum HOM05D002570 ORTHO05D002689 3.8e-08 61.6 49 55.1
THA.LOC104812588 Tarenaya hassleriana HOM05D002570 ORTHO05D002689 3.8e-08 61.6 68 42.6
HPP92_015713 Vanilla planifolia HOM05D002570 ORTHO05D002689 3.8e-08 61.6 85 38.8
Gohir.D05G211800 Gossypium hirsutum HOM05D002570 ORTHO05D002689 4.9e-08 61.2 73 45.2
TAR628G0321 Trochodendron aralioides HOM05D002570 ORTHO05D002689 6.4e-08 60.8 77 42.9
ATR0030G054 Amborella trichopoda HOM05D002570 ORTHO05D002689 8.4e-08 60.5 86 36.0
PSO017G5699 Papaver somniferum HOM05D002570 ORTHO05D002689 8.4e-08 60.5 49 53.1
TAR381G1276 Trochodendron aralioides HOM05D001633 ORTHO05D002880 8.4e-08 60.5 65 49.2
Glyma.19G015500 Glycine max HOM05D002570 ORTHO05D002689 1.1e-07 60.1 80 41.2
Hma1.2p1_0819F.1_g223830 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 1.1e-07 60.1 76 39.5
Prupe.1G424900 Prunus persica HOM05D002570 ORTHO05D002689 1.1e-07 60.1 76 36.8
Medtr2g105430 Medicago truncatula HOM05D002570 ORTHO05D002689 1.4e-07 59.7 69 44.9
arahy.Tifrunner.gnm1.ann1.CN16C1 Arachis hypogaea HOM05D002570 ORTHO05D002689 1.9e-07 59.3 84 34.5
BcaB07g30593 Brassica carinata HOM05D002570 ORTHO05D002689 2.4e-07 58.9 86 37.2
Carub.0008s0556 Capsella rubella HOM05D002570 ORTHO05D002689 2.4e-07 58.9 58 46.6
Glyma.13G068400 Glycine max HOM05D002570 ORTHO05D002689 2.4e-07 58.9 52 48.1
PGR083G0844 Punica granatum HOM05D002570 ORTHO05D002689 2.4e-07 58.9 75 42.7
Sabra02G0094200 Salix brachista HOM05D002570 ORTHO05D002689 2.4e-07 58.9 79 40.5
Zm00001eb007320 Zea mays HOM05D002570 ORTHO05D002689 2.4e-07 58.9 50 52.0
Zm00001eb400610 Zea mays HOM05D002570 ORTHO05D002689 2.4e-07 58.9 50 52.0
Zm00001eb400620 Zea mays HOM05D002570 ORTHO05D002689 2.4e-07 58.9 50 52.0
arahy.Tifrunner.gnm1.ann1.NFUI4Q Arachis hypogaea HOM05D002570 ORTHO05D002689 3.2e-07 58.5 61 49.2
arahy.Tifrunner.gnm1.ann1.Z5UTBB Arachis hypogaea HOM05D002570 ORTHO05D002689 3.2e-07 58.5 61 49.2
COL.COLO4_28527 Corchorus olitorius HOM05D002570 ORTHO05D002689 3.2e-07 58.5 65 49.2
Gorai.009G218400 Gossypium raimondii HOM05D002570 ORTHO05D002689 3.2e-07 58.5 75 45.3
THA.LOC104804738 Tarenaya hassleriana HOM05D002570 ORTHO05D002689 3.2e-07 58.5 62 40.3
TWI56G1429 Tripterygium wilfordii HOM05D002570 ORTHO05D002689 3.2e-07 58.5 77 40.3
GSVIVG01009363001 Vitis vinifera HOM05D002570 ORTHO05D002689 3.2e-07 58.5 78 41.0
Aa31LG9G13240 Aethionema arabicum HOM05D002570 ORTHO05D002689 4.2e-07 58.2 63 42.9
Migut.N02768 Erythranthe guttata HOM05D002570 ORTHO05D002689 4.2e-07 58.2 62 43.5
Eucgr.F00117 Eucalyptus grandis HOM05D002570 ORTHO05D002689 4.2e-07 58.2 83 42.2
Phvul.004G022100 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 4.2e-07 58.2 82 39.0
SalBow7G3896 Salvia bowleyana HOM05D002570 ORTHO05D002689 4.2e-07 58.2 62 40.3
vmacro21448 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 4.2e-07 58.2 77 36.4
AT5G43150 Arabidopsis thaliana HOM05D002570 ORTHO05D002689 5.4e-07 57.8 69 39.1
Nn5g30532 Nelumbo nucifera HOM05D002570 ORTHO05D002689 5.4e-07 57.8 75 41.3
Nitab4.5_0000934g0050 Nicotiana tabacum HOM05D002570 ORTHO05D002689 7.1e-07 57.4 77 36.4
Nitab4.5_0011511g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 7.1e-07 57.4 77 36.4
RcHm_v2.0_Chr6g0309331 Rosa chinensis HOM05D002570 ORTHO05D002689 7.1e-07 57.4 78 39.7
PGSC0003DMG400021530 Solanum tuberosum HOM05D002570 ORTHO05D002689 7.1e-07 57.4 74 37.8
HPP92_012494 Vanilla planifolia HOM05D002570 ORTHO05D002689 9.3e-07 57.0 83 38.6
CARHR180760 Cardamine hirsuta HOM05D002570 ORTHO05D002689 1.2e-06 56.6 50 48.0
Thhalv10003296m.g Eutrema salsugineum HOM05D002570 ORTHO05D002689 1.2e-06 56.6 50 48.0
Phvul.005G184200 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 1.2e-06 56.6 75 42.7
Potri.002G119700 Populus trichocarpa HOM05D002570 ORTHO05D002689 1.2e-06 56.6 79 38.0
HPP92_026648 Vanilla planifolia HOM05D002570 ORTHO05D002689 1.2e-06 56.6 83 33.7
Cpa.g.sc21.103 Carica papaya HOM05D002570 ORTHO05D002689 1.6e-06 56.2 77 36.4
Gohir.A05G208300 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.6e-06 56.2 77 42.9
Cc10_g05610 Coffea canephora HOM05D002570 ORTHO05D002689 2.1e-06 55.8 76 35.5
Oeu012866.1 Olea europaea HOM05D002570 ORTHO05D002689 2.1e-06 55.8 87 40.2
SalBow1G2645 Salvia bowleyana HOM05D002570 ORTHO05D002689 2.7e-06 55.5 78 41.0
Aqoxy5G00897 Aquilegia oxysepala HOM05D002570 ORTHO05D002689 3.5e-06 55.1 70 42.9
A02p27670 Brassica napus HOM05D002570 ORTHO05D002689 3.5e-06 55.1 50 46.0
BraA02t07806Z Brassica rapa HOM05D002570 ORTHO05D002689 3.5e-06 55.1 50 46.0
Migut.I00642 Erythranthe guttata HOM05D002570 ORTHO05D002689 3.5e-06 55.1 78 43.6
Glyma.15G001900 Glycine max HOM05D002570 ORTHO05D002689 3.5e-06 55.1 91 35.2
Manes.11G071400 Manihot esculenta HOM05D002570 ORTHO05D002689 3.5e-06 55.1 85 36.5
MBI16_g22819_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 4.6e-06 54.7 64 40.6
THA.LOC104825766 Tarenaya hassleriana HOM05D002570 ORTHO05D002689 4.6e-06 54.7 61 39.3
A06p48010 Brassica napus HOM05D002570 ORTHO05D002689 6.0e-06 54.3 60 43.3
C07p25720 Brassica napus HOM05D002570 ORTHO05D002689 6.0e-06 54.3 50 48.0
BraA06t27671Z Brassica rapa HOM05D002570 ORTHO05D002689 6.0e-06 54.3 60 43.3
Sp2g07930 Schrenkiella parvula HOM05D002570 ORTHO05D002689 6.0e-06 54.3 76 34.2
Sc15g0005750 Simmondsia chinensis HOM05D001633 ORTHO05D002880 6.0e-06 54.3 72 40.3
BcaC06g34677 Brassica carinata HOM05D002570 ORTHO05D002689 7.8e-06 53.9 50 46.0
BolC7t43091H Brassica oleracea HOM05D002570 ORTHO05D002689 7.8e-06 53.9 50 46.0
Lj3g0002113 Lotus japonicus HOM05D002570 ORTHO05D002689 7.8e-06 53.9 70 42.9
Zm00001eb067680 Zea mays HOM05D002570 ORTHO05D002689 7.8e-06 53.9 85 37.6


User provided reference genes

Program Settings