Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 4.9e-123 444.5 227 100.0
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 9.5e-111 403.7 227 89.4
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 3.9e-104 381.7 206 92.7
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 6.6e-104 380.9 227 82.4
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 1.5e-103 379.8 227 82.4
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.9e-103 379.4 227 82.8
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 2.5e-103 379.0 227 83.7
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 3.3e-103 378.6 227 82.4
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 9.6e-103 377.1 227 82.8
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 2.8e-102 375.6 227 82.4
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 3.6e-102 375.2 227 82.4
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 6.2e-102 374.4 227 82.4
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 6.2e-102 374.4 227 82.8
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 8.1e-102 374.0 226 82.7
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 8.1e-102 374.0 227 82.4
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.1e-101 373.6 227 81.9
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 1.4e-101 373.2 227 81.5
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 1.4e-101 373.2 227 80.6
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.8e-101 372.9 228 81.6
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 3.1e-101 372.1 227 81.9
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.1e-101 372.1 227 81.1
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 5.2e-101 371.3 227 81.5
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 5.2e-101 371.3 227 81.9
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 5.2e-101 371.3 227 81.5
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 6.8e-101 370.9 228 82.5
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.5e-100 369.8 227 80.2
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.5e-100 369.8 227 81.1
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 2.0e-100 369.4 227 82.4
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 2.0e-100 369.4 214 85.5
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 5.8e-100 367.9 227 80.2
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 7.6e-100 367.5 228 81.1
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 9.9e-100 367.1 228 80.7
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 1.3e-99 366.7 227 80.6
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 1.3e-99 366.7 227 80.6
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 1.3e-99 366.7 227 80.2
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 1.3e-99 366.7 227 79.3
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.3e-99 366.7 227 79.7
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.7e-99 366.3 227 80.6
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.7e-99 366.3 228 80.7
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 3.8e-99 365.2 227 80.2
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 3.8e-99 365.2 228 80.3
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 3.8e-99 365.2 227 80.2
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 4.9e-99 364.8 226 80.5
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 4.9e-99 364.8 218 83.5
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 4.9e-99 364.8 227 80.2
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 4.9e-99 364.8 222 83.8
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 6.4e-99 364.4 226 80.5
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 8.4e-99 364.0 226 81.0
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 8.4e-99 364.0 216 83.8
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 1.1e-98 363.6 218 83.0
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 1.4e-98 363.2 227 79.7
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 1.9e-98 362.8 227 80.2
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.9e-98 362.8 226 79.6
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 2.4e-98 362.5 227 78.9
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 3.2e-98 362.1 216 82.9
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 4.2e-98 361.7 227 79.7
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 4.2e-98 361.7 229 80.3
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 7.1e-98 360.9 228 78.1
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 9.3e-98 360.5 226 79.6
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 9.3e-98 360.5 227 79.7
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 9.3e-98 360.5 227 78.9
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 9.3e-98 360.5 227 78.9
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.2e-97 360.1 227 79.7
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 1.6e-97 359.8 227 79.3
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 1.6e-97 359.8 215 81.9
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 2.1e-97 359.4 227 78.4
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 2.1e-97 359.4 227 80.2
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.1e-97 359.4 218 82.1
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 3.5e-97 358.6 227 78.0
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 3.5e-97 358.6 227 78.9
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 3.5e-97 358.6 227 78.0
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 4.6e-97 358.2 228 82.0
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 7.8e-97 357.5 229 78.6
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.0e-96 357.1 227 78.4
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 1.0e-96 357.1 218 80.7
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 1.3e-96 356.7 227 78.0
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 1.7e-96 356.3 227 75.8
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 1.7e-96 356.3 214 81.3
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 1.7e-96 356.3 229 79.0
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 2.3e-96 355.9 227 77.5
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 2.3e-96 355.9 218 81.2
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 2.3e-96 355.9 227 76.7
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 5.1e-96 354.8 218 81.7
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 5.1e-96 354.8 216 82.4
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 5.1e-96 354.8 227 78.9
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 1.1e-95 353.6 219 81.3
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 1.1e-95 353.6 227 78.4
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 1.9e-95 352.8 227 78.4
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 3.3e-95 352.1 227 76.7
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 5.6e-95 351.3 227 77.1
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.6e-94 348.6 214 80.4
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 4.8e-94 348.2 214 79.9
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 6.2e-94 347.8 214 79.4
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 1.4e-93 346.7 228 75.9
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.8e-93 346.3 233 75.1
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 2.4e-93 345.9 224 75.9
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 2.4e-93 345.9 215 79.5
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 9.0e-93 344.0 225 77.3
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 9.0e-93 344.0 214 79.4
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 9.0e-93 344.0 214 79.4
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 9.0e-93 344.0 214 79.9
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 1.2e-92 343.6 214 79.9
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 2.0e-92 342.8 227 77.5
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 7.6e-92 340.9 203 80.8
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 1.7e-91 339.7 206 82.0
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 2.2e-91 339.3 214 78.0
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 2.9e-91 339.0 225 76.4
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 2.9e-91 339.0 213 80.3
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 5.4e-90 334.7 205 79.0
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 3.5e-89 332.0 265 67.2
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 7.8e-89 330.9 228 75.0
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 1.3e-86 323.6 202 81.7
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.8e-85 319.7 214 74.3
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 8.4e-83 310.8 212 72.6
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 3.2e-82 308.9 195 77.9
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 1.2e-81 307.0 191 78.0
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 1.2e-81 307.0 190 80.0
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 6.7e-80 301.2 227 69.6
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 8.7e-80 300.8 195 77.4
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 3.7e-78 295.4 214 71.0
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 4.2e-74 282.0 183 78.1
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 3.5e-73 278.9 220 64.5
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 1.3e-72 276.9 218 67.4
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 6.2e-70 268.1 164 80.5
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 9.0e-69 264.2 164 79.3
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.2e-68 263.8 229 62.4
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 9.3e-66 254.2 227 62.1
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 1.2e-65 253.8 209 62.7
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 2.1e-65 253.1 193 68.9
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 4.6e-65 251.9 157 78.3
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 1.3e-64 250.4 153 81.0
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 2.3e-64 249.6 150 82.0
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 6.3e-62 241.5 197 65.5
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 1.4e-61 240.4 237 54.9
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 4.6e-57 225.3 152 74.3
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 1.1e-55 220.7 222 53.6
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 3.8e-51 205.7 189 61.4
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 7.2e-50 201.4 131 72.5
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 9.4e-42 174.5 112 75.0
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 1.7e-38 163.7 108 76.9
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 7.0e-37 158.3 115 69.6
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 6.3e-30 135.2 92 70.7
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 9.1e-29 131.3 109 64.2
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.0e-28 130.2 87 72.4
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.0e-23 113.6 113 57.5
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 2.6e-23 113.2 135 48.9
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 2.8e-17 93.2 63 69.8
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 3.0e-16 89.7 51 84.3
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.9e-14 83.2 97 48.5
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 6.4e-14 82.0 70 62.9
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 5.9e-12 75.5 68 57.4
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 7.3e-10 68.6 114 39.5
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 2.8e-09 66.6 208 28.8
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.6e-07 60.1 63 54.0
CANSAT35G0549 Cannabis sativa HOM05D000223 ORTHO05D008670 8.3e-06 55.1 154 26.0


User provided reference genes

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