Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g10495 Beta vulgaris HOM05D002989 ORTHO05D003218 1.3e-73 279.6 144 100.0
EL10Ac5g10497 Beta vulgaris HOM05D002989 ORTHO05D003218 3.3e-40 168.7 93 92.5
AUR62032285 Chenopodium quinoa HOM05D002989 ORTHO05D003218 3.0e-33 145.6 87 82.8
Ah.11g050240 Amaranthus hybridus HOM05D002989 ORTHO05D003218 6.8e-30 134.4 94 73.4
Hund02863 Selenicereus undatus HOM05D002989 ORTHO05D003218 1.4e-27 126.7 101 68.3
Sc17g0001190 Simmondsia chinensis HOM05D002989 ORTHO05D003218 5.8e-21 104.8 86 64.0
Rhsim01G0272200 Rhododendron simsii HOM05D002989 ORTHO05D003218 3.5e-18 95.5 99 55.6
Cc01_g19030 Coffea canephora HOM05D002989 ORTHO05D003218 8.7e-17 90.9 76 61.8
MD03G1258500 Malus domestica HOM05D002989 ORTHO05D003218 2.5e-16 89.4 72 62.5
PGR044G2467 Punica granatum HOM05D002989 ORTHO05D003218 2.5e-16 89.4 87 56.3
CSS0014533 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 3.3e-16 89.0 92 55.4
Prupe.8G235000 Prunus persica HOM05D002989 ORTHO05D003218 1.3e-15 87.0 61 67.2
SalBow4G0275 Salvia bowleyana HOM05D002989 ORTHO05D003218 1.3e-15 87.0 70 62.9
vmacro14890 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 1.3e-15 87.0 69 63.8
PGR044G1058 Punica granatum HOM05D002989 ORTHO05D003218 2.1e-15 86.3 87 55.2
Sabra05G0164000 Salix brachista HOM05D002989 ORTHO05D003218 2.1e-15 86.3 70 64.3
TWI12G0259 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 2.1e-15 86.3 67 62.7
GSVIVG01003117001 Vitis vinifera HOM05D002989 ORTHO05D003218 2.8e-15 85.9 90 56.7
Atru.chr5.1517 Acer truncatum HOM05D002989 ORTHO05D003218 3.6e-15 85.5 63 66.7
Ciclev10018605m.g Citrus clementina HOM05D002989 ORTHO05D003218 3.6e-15 85.5 70 64.3
Potri.005G214650 Populus trichocarpa HOM05D002989 ORTHO05D003218 3.6e-15 85.5 70 64.3
Duzib211G0299 Durio zibethinus HOM05D002989 ORTHO05D003218 4.8e-15 85.1 103 49.5
COL.COLO4_09194 Corchorus olitorius HOM05D002989 ORTHO05D003218 6.2e-15 84.7 89 52.8
QL12p042063 Quercus lobata HOM05D002989 ORTHO05D003218 8.1e-15 84.3 97 52.6
FvH4_2g23010 Fragaria vesca HOM05D002989 ORTHO05D003218 1.4e-14 83.6 61 63.9
FAN20G1777 Fragaria x ananassa HOM05D002989 ORTHO05D003218 1.4e-14 83.6 61 63.9
FAN27G2040 Fragaria x ananassa HOM05D002989 ORTHO05D003218 1.4e-14 83.6 61 63.9
Manes.05G081600 Manihot esculenta HOM05D002989 ORTHO05D003218 1.4e-14 83.6 62 67.7
Nn1g02454 Nelumbo nucifera HOM05D002989 ORTHO05D003218 1.4e-14 83.6 70 61.4
Actinidia24922 Actinidia chinensis HOM05D001150 ORTHO05D003218 1.8e-14 83.2 59 71.2
Gohir.A08G045205 Gossypium hirsutum HOM05D002989 ORTHO05D003218 1.8e-14 83.2 89 53.9
RcHm_v2.0_Chr6g0290051 Rosa chinensis HOM05D002989 ORTHO05D003218 1.8e-14 83.2 61 63.9
FAN24G2837 Fragaria x ananassa HOM05D002989 ORTHO05D003218 2.4e-14 82.8 61 62.3
Gorai.004G056100 Gossypium raimondii HOM05D002989 ORTHO05D003218 2.4e-14 82.8 89 52.8
AL5G46190 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 3.1e-14 82.4 63 63.5
Glyma.02G144500 Glycine max HOM05D002989 ORTHO05D003218 3.1e-14 82.4 55 72.7
Oeu025764.3 Olea europaea HOM05D002989 ORTHO05D003218 3.1e-14 82.4 70 61.4
Thecc.01G272000 Theobroma cacao HOM05D002989 ORTHO05D003218 3.1e-14 82.4 67 62.7
Thhalv10005760m.g Eutrema salsugineum HOM05D002989 ORTHO05D003218 4.0e-14 82.0 63 63.5
Lalb_Chr21g0306351 Lupinus albus HOM05D002989 ORTHO05D003218 4.0e-14 82.0 78 51.3
CiPaw.08G108900 Carya illinoinensis HOM05D002989 ORTHO05D003218 9.0e-14 80.9 57 73.7
Lsat_1_v5_gn_9_7440 Lactuca sativa HOM05D002989 ORTHO05D003218 1.2e-13 80.5 62 64.5
Lj2C1165G7 Lonicera japonica HOM05D002989 ORTHO05D003218 1.2e-13 80.5 95 51.6
VMungo0720G0840 Vigna mungo HOM05D002989 ORTHO05D003218 1.2e-13 80.5 54 74.1
Migut.D00359 Erythranthe guttata HOM05D002989 ORTHO05D003218 1.5e-13 80.1 63 61.9
FAN15G0470 Fragaria x ananassa HOM05D002989 ORTHO05D003218 1.5e-13 80.1 61 62.3
Sopen09g027400 Solanum pennellii HOM05D002989 ORTHO05D003218 1.5e-13 80.1 88 47.7
CANSAT25G2944 Cannabis sativa HOM05D002989 ORTHO05D003218 2.0e-13 79.7 60 65.0
Nitab4.5_0000459g0030 Nicotiana tabacum HOM05D002989 ORTHO05D003218 2.0e-13 79.7 57 66.7
Nitab4.5_0003775g0010 Nicotiana tabacum HOM05D002989 ORTHO05D003218 2.0e-13 79.7 57 66.7
MSTRG.18266 Avicennia marina HOM05D002989 ORTHO05D003218 2.6e-13 79.3 63 60.3
TAR362G0937 Trochodendron aralioides HOM05D002989 ORTHO05D003218 2.6e-13 79.3 59 69.5
TAR365G0943 Trochodendron aralioides HOM05D002989 ORTHO05D003218 2.6e-13 79.3 74 58.1
AT3G63340 Arabidopsis thaliana HOM05D002989 ORTHO05D003218 3.4e-13 79.0 57 66.7
CAN.G380.7 Capsicum annuum HOM05D002989 ORTHO05D003218 3.4e-13 79.0 57 64.9
Cpa.g.sc52.115 Carica papaya HOM05D002989 ORTHO05D003218 3.4e-13 79.0 51 76.5
ECA247G3236 Erigeron canadensis HOM05D002989 ORTHO05D003218 3.4e-13 79.0 63 65.1
HanXRQChr10g0281961 Helianthus annuus HOM05D002989 ORTHO05D003218 3.4e-13 79.0 70 55.7
Os11g0586100 Oryza sativa ssp. japonica HOM05D002989 ORTHO05D003218 3.4e-13 79.0 58 65.5
Sp5g00200 Schrenkiella parvula HOM05D002989 ORTHO05D003218 3.4e-13 79.0 64 64.1
TPR.G25700 Trifolium pratense HOM05D002989 ORTHO05D003218 3.4e-13 79.0 59 64.4
arahy.Tifrunner.gnm1.ann1.V0L3RT Arachis hypogaea HOM05D002989 ORTHO05D003218 4.5e-13 78.6 56 69.6
CARHR291630 Cardamine hirsuta HOM05D002989 ORTHO05D003218 4.5e-13 78.6 63 61.9
ClCG07G000490 Citrullus lanatus HOM05D002989 ORTHO05D003218 4.5e-13 78.6 54 64.8
Aa31LG10G17170 Aethionema arabicum HOM05D002989 ORTHO05D003218 5.8e-13 78.2 62 64.5
arahy.Tifrunner.gnm1.ann1.T1HKRS Arachis hypogaea HOM05D002989 ORTHO05D003218 7.6e-13 77.8 54 72.2
Ca_09731_v3 Cicer arietinum L. HOM05D002989 ORTHO05D003218 7.6e-13 77.8 59 67.8
MBI11_g09455_MAGBIO Magnolia biondii HOM05D002989 ORTHO05D003218 7.6e-13 77.8 89 49.4
Cfa006196 Carpinus fangiana HOM05D002989 ORTHO05D003218 9.9e-13 77.4 48 77.1
Haze_04646 Corylus avellana HOM05D002989 ORTHO05D003218 9.9e-13 77.4 48 77.1
PSO832G1612 Papaver somniferum HOM05D002989 ORTHO05D003218 9.9e-13 77.4 62 61.3
Phvul.007G174700 Phaseolus vulgaris HOM05D002989 ORTHO05D003218 1.3e-12 77.0 55 69.1
MELO3C014325.2 Cucumis melo HOM05D002989 ORTHO05D003218 1.7e-12 76.6 52 65.4
CsaV3_2G013890 Cucumis sativus L. HOM05D002989 ORTHO05D003218 1.7e-12 76.6 52 65.4
Lj5g0006345 Lotus japonicus HOM05D002989 ORTHO05D003218 1.7e-12 76.6 55 69.1
Medtr1g071370 Medicago truncatula HOM05D002989 ORTHO05D003218 1.7e-12 76.6 59 64.4
RcHm_v2.0_Chr3g0479641 Rosa chinensis HOM05D002989 ORTHO05D003218 2.9e-12 75.9 50 74.0
Dinv32887 Davidia involucrata HOM05D002989 ORTHO05D003218 3.8e-12 75.5 52 71.2
SGA_v2.0_scaffold1G00532 Striga asiatica HOM05D002989 ORTHO05D003218 4.9e-12 75.1 63 58.7
Zm00001eb114480 Zea mays HOM05D002989 ORTHO05D003218 4.9e-12 75.1 92 45.7
Sed0003144 Sechium edule HOM05D002989 ORTHO05D003218 8.4e-12 74.3 52 61.5
unitig_0.g140 Utricularia gibba HOM05D002989 ORTHO05D003218 8.4e-12 74.3 54 63.0
MD00G1147600 Malus domestica HOM05D002989 ORTHO05D003218 1.1e-11 73.9 70 55.7
BcaB02g08065 Brassica carinata HOM05D002989 ORTHO05D003218 1.4e-11 73.6 50 72.0
A04p00100 Brassica napus HOM05D002989 ORTHO05D003218 1.4e-11 73.6 50 72.0
C04p29910 Brassica napus HOM05D002989 ORTHO05D003218 1.4e-11 73.6 50 72.0
BolC4t24522H Brassica oleracea HOM05D002989 ORTHO05D003218 1.4e-11 73.6 50 72.0
BraA04t15730Z Brassica rapa HOM05D002989 ORTHO05D003218 1.4e-11 73.6 50 72.0
HanXRQChr09g0240711 Helianthus annuus HOM05D002989 ORTHO05D003218 1.4e-11 73.6 65 58.5
HanXRQChr09g0240651 Helianthus annuus HOM05D002989 ORTHO05D003218 1.9e-11 73.2 63 58.7
Carub.0005s2998 Capsella rubella HOM05D002989 ORTHO05D003218 2.4e-11 72.8 105 40.0
HanXRQChr09g0240611 Helianthus annuus HOM05D002989 ORTHO05D003218 4.2e-11 72.0 63 58.7
AL5G46180 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 5.4e-11 71.6 86 48.8
HPP92_020349 Vanilla planifolia HOM05D002989 ORTHO05D003218 9.3e-11 70.9 55 61.8
HanXRQChr09g0240681 Helianthus annuus HOM05D002989 ORTHO05D003218 1.2e-10 70.5 63 57.1
MD00G1147300 Malus domestica HOM05D002989 ORTHO05D003218 1.6e-10 70.1 41 78.0
MD08G1204000 Malus domestica HOM05D002989 ORTHO05D003218 1.6e-10 70.1 41 78.0
QL12p042129 Quercus lobata HOM05D000097 ORTHO05D003218 2.7e-10 69.3 45 73.3
ATR0665G490 Amborella trichopoda HOM05D002989 ORTHO05D003218 4.6e-10 68.6 84 45.2
TAR365G0266 Trochodendron aralioides HOM05D002989 ORTHO05D003218 1.0e-09 67.4 55 58.2
THA.LOC104809895 Tarenaya hassleriana HOM05D002989 ORTHO05D003218 1.8e-09 66.6 63 54.0
Sp5g00210 Schrenkiella parvula HOM05D002989 ORTHO05D003218 6.7e-09 64.7 45 68.9
Aqoxy7G03495 Aquilegia oxysepala HOM05D002989 ORTHO05D003218 1.1e-08 63.9 63 50.8
MD00G1147800 Malus domestica HOM05D002989 ORTHO05D003218 1.9e-08 63.2 41 68.3
Manes.01G204300 Manihot esculenta HOM05D002989 ORTHO05D003218 2.5e-08 62.8 56 50.0
SEGI_15483 Sequoiadendron giganteum HOM05D017310 ORTHO05D003218 2.5e-08 62.8 58 55.2
Haze_04649 Corylus avellana HOM05D002989 ORTHO05D003218 7.4e-08 61.2 42 66.7
Cfa006195 Carpinus fangiana HOM05D002989 ORTHO05D003218 1.6e-07 60.1 42 66.7
GSVIVG01003115001 Vitis vinifera HOM05D002989 ORTHO05D003218 3.7e-07 58.9 77 40.3
DCAR_012504 Daucus carota HOM05D002989 ORTHO05D003218 6.2e-07 58.2 57 47.4
CDE05G1038 Ceratophyllum demersum HOM05D003967 ORTHO05D004531 1.1e-06 57.4 37 67.6
vmacro02612 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 1.1e-06 57.4 68 45.6
QL12p042043 Quercus lobata HOM05D002989 ORTHO05D003218 1.4e-06 57.0 56 50.0
Nitab4.5_0002266g0120 Nicotiana tabacum HOM05D002989 ORTHO05D003218 4.0e-06 55.5 71 45.1
Actinidia19960 Actinidia chinensis HOM05D002989 ORTHO05D003218 6.9e-06 54.7 42 61.9
Nitab4.5_0004086g0050 Nicotiana tabacum HOM05D002989 ORTHO05D003218 6.9e-06 54.7 71 45.1
Oeu052360.1 Olea europaea HOM05D002989 ORTHO05D003218 9.0e-06 54.3 62 45.2
Sopen06g035490 Solanum pennellii HOM05D002989 ORTHO05D003218 9.0e-06 54.3 42 57.1


User provided reference genes

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