Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 3.7e-105 384.8 183 100.0
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 1.4e-80 303.1 151 92.1
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 3.6e-76 288.5 151 86.1
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 8.3e-73 277.3 151 81.5
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 6.0e-71 271.2 151 80.8
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 6.0e-71 271.2 151 80.8
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 6.0e-71 271.2 151 82.1
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 1.3e-70 270.0 149 81.9
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 1.7e-70 269.6 151 80.1
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 3.0e-70 268.9 156 78.2
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 3.9e-70 268.5 151 79.5
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 5.0e-70 268.1 151 79.5
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 5.0e-70 268.1 151 81.5
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 1.5e-69 266.5 151 78.8
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.9e-69 266.2 149 81.2
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 1.9e-69 266.2 151 78.1
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 2.5e-69 265.8 149 81.2
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 2.5e-69 265.8 149 81.2
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 2.5e-69 265.8 149 81.2
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 2.5e-69 265.8 149 81.2
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 3.3e-69 265.4 151 77.5
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 4.3e-69 265.0 149 80.5
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 4.3e-69 265.0 149 80.5
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 4.3e-69 265.0 151 78.1
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 5.6e-69 264.6 151 78.1
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 5.6e-69 264.6 151 79.5
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 7.3e-69 264.2 151 76.8
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.6e-68 263.1 151 77.5
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 1.6e-68 263.1 149 79.2
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 2.1e-68 262.7 149 78.5
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 2.8e-68 262.3 151 76.2
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 2.8e-68 262.3 149 78.5
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 2.8e-68 262.3 155 76.8
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 2.8e-68 262.3 149 79.2
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 3.6e-68 261.9 151 77.5
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 3.6e-68 261.9 151 78.1
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 3.6e-68 261.9 151 76.8
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 4.7e-68 261.5 151 73.5
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 4.7e-68 261.5 151 76.2
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 8.0e-68 260.8 151 76.2
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 1.1e-67 260.4 151 77.5
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 1.1e-67 260.4 151 77.5
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 1.4e-67 260.0 151 76.8
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 1.4e-67 260.0 151 77.5
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 2.3e-67 259.2 151 76.2
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 2.3e-67 259.2 151 73.5
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 3.1e-67 258.8 151 76.8
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 3.1e-67 258.8 150 75.3
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 3.1e-67 258.8 151 77.5
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 3.1e-67 258.8 151 72.8
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 4.0e-67 258.5 158 75.3
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 5.2e-67 258.1 151 75.5
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 6.8e-67 257.7 151 75.5
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 1.5e-66 256.5 151 74.8
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 2.0e-66 256.1 151 75.5
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 5.8e-66 254.6 151 74.8
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 7.5e-66 254.2 151 74.2
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 7.5e-66 254.2 151 75.5
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 9.8e-66 253.8 151 74.2
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 9.8e-66 253.8 151 73.5
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 1.3e-65 253.4 151 74.8
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 1.3e-65 253.4 151 76.2
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 1.7e-65 253.1 155 71.6
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 2.2e-65 252.7 151 76.8
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 2.9e-65 252.3 151 74.2
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 3.7e-65 251.9 150 72.0
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 4.9e-65 251.5 151 70.9
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 4.9e-65 251.5 190 62.1
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 4.9e-65 251.5 151 73.5
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 6.4e-65 251.1 150 73.3
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 6.4e-65 251.1 151 73.5
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 8.3e-65 250.8 151 75.5
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 8.3e-65 250.8 148 75.7
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 1.1e-64 250.4 151 74.8
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 4.1e-64 248.4 151 73.5
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 5.4e-64 248.1 151 75.5
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 7.0e-64 247.7 145 74.5
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 7.0e-64 247.7 145 74.5
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 7.0e-64 247.7 161 72.0
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.6e-63 246.5 172 68.0
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.6e-63 246.5 172 68.0
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 2.0e-63 246.1 155 71.6
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 3.5e-63 245.4 151 73.5
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 1.7e-62 243.0 155 71.0
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 1.7e-62 243.0 138 77.5
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 3.9e-62 241.9 151 70.2
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 1.1e-61 240.4 151 72.2
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 7.3e-61 237.7 156 67.9
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 2.1e-60 236.1 169 62.1
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 4.0e-59 231.9 153 71.9
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 8.9e-59 230.7 151 66.9
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 1.7e-57 226.5 151 73.5
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 1.0e-54 217.2 151 70.2
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 2.5e-53 212.6 151 63.6
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 3.3e-53 212.2 130 70.8
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 5.6e-53 211.5 151 62.3
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 2.8e-52 209.1 149 61.1
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 1.1e-51 207.2 151 60.3
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 3.1e-51 205.7 152 65.1
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 2.0e-50 203.0 151 64.9
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 3.8e-49 198.7 151 64.2
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 1.3e-46 190.3 106 80.2
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 3.3e-45 185.7 175 57.1
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 1.1e-37 160.6 187 44.4
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 4.0e-35 152.1 129 57.4
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 7.1e-32 141.4 157 48.4
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.6e-31 140.2 93 71.0
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 1.5e-29 133.7 171 41.5
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 4.3e-29 132.1 93 67.7
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 2.2e-25 119.8 154 40.3
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 4.9e-25 118.6 119 51.3
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 1.1e-24 117.5 119 52.1
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 3.5e-23 112.5 86 64.0
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 2.3e-22 109.8 65 72.3
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 5.1e-22 108.6 65 75.4
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 5.1e-22 108.6 65 76.9
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 2.6e-18 96.3 106 44.3
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 2.6e-18 96.3 141 38.3
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 2.2e-17 93.2 141 38.3
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 1.4e-11 73.9 135 37.0
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 2.9e-09 66.2 116 37.9
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 1.4e-08 63.9 123 32.5
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 1.8e-06 57.0 53 49.1
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 2.3e-06 56.6 50 58.0


User provided reference genes

Program Settings