Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 2.0e-138 495.7 251 100.0
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 6.2e-111 404.4 253 82.2
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 5.8e-109 397.9 253 81.0
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 4.3e-88 328.6 227 75.8
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 2.3e-81 306.2 253 64.4
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 6.2e-79 298.1 251 61.0
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 8.1e-79 297.7 254 63.4
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 8.1e-79 297.7 252 64.7
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 1.4e-78 297.0 253 63.6
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 4.0e-78 295.4 254 62.6
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 4.0e-78 295.4 249 63.1
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 9.0e-78 294.3 256 62.1
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 1.2e-77 293.9 254 62.2
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.2e-77 293.9 256 62.5
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 2.6e-77 292.7 270 60.4
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 4.5e-77 292.0 253 61.3
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 7.6e-77 291.2 250 62.0
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 1.3e-76 290.4 259 59.8
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 2.9e-76 289.3 252 61.9
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 2.9e-76 289.3 228 68.0
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 3.8e-76 288.9 254 61.4
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 8.4e-76 287.7 253 60.9
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.1e-75 287.3 251 62.5
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 1.1e-75 287.3 234 67.5
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 1.1e-75 287.3 257 59.9
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 4.2e-75 285.4 255 62.0
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 5.5e-75 285.0 225 64.9
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 9.3e-75 284.3 253 60.5
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 9.3e-75 284.3 255 59.2
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 1.2e-74 283.9 249 60.2
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 1.2e-74 283.9 255 59.2
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.1e-74 283.1 248 62.9
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.1e-74 283.1 250 58.8
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.7e-74 282.7 250 61.2
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 3.5e-74 282.3 245 64.1
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 4.6e-74 282.0 245 62.4
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 4.6e-74 282.0 255 59.6
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 7.9e-74 281.2 257 58.4
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.0e-73 280.8 255 60.8
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.3e-73 280.4 256 60.9
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 1.3e-73 280.4 233 64.8
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 2.3e-73 279.6 250 56.8
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 3.0e-73 279.3 251 58.6
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 3.9e-73 278.9 254 60.2
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 5.1e-73 278.5 248 59.7
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 5.1e-73 278.5 235 62.6
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 8.7e-73 277.7 246 62.2
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 2.5e-72 276.2 283 55.5
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.3e-72 275.8 246 61.8
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 3.3e-72 275.8 249 61.8
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 4.3e-72 275.4 253 58.1
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 5.7e-72 275.0 252 59.5
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 5.7e-72 275.0 245 61.2
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 9.6e-72 274.2 252 62.3
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 2.8e-71 272.7 247 61.1
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 6.2e-71 271.6 246 60.6
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 6.2e-71 271.6 255 61.2
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 6.2e-71 271.6 254 56.3
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 4.1e-70 268.9 249 57.8
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 4.1e-70 268.9 250 57.6
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 5.3e-70 268.5 232 60.3
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 6.9e-70 268.1 232 59.9
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 9.0e-70 267.7 244 59.4
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 1.5e-69 266.9 249 58.6
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 2.6e-69 266.2 253 58.9
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 2.6e-69 266.2 249 57.8
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 2.6e-69 266.2 263 54.8
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.4e-69 265.8 257 56.8
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 3.4e-69 265.8 257 56.8
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 1.0e-68 264.2 244 59.4
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 1.3e-68 263.8 244 57.4
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 1.7e-68 263.5 254 59.1
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 2.2e-68 263.1 253 57.3
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 5.0e-68 261.9 253 56.9
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 6.5e-68 261.5 241 60.6
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 6.5e-68 261.5 250 58.8
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 1.1e-67 260.8 248 57.3
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 1.9e-67 260.0 277 52.3
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 2.5e-67 259.6 244 56.6
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 5.5e-67 258.5 227 58.1
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 5.5e-67 258.5 250 54.8
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 7.2e-67 258.1 229 59.8
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 2.7e-66 256.1 254 57.1
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 3.5e-66 255.8 257 55.3
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 3.5e-66 255.8 283 52.3
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 4.6e-66 255.4 229 59.4
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 6.1e-66 255.0 211 62.6
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 6.1e-66 255.0 246 55.7
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 7.9e-66 254.6 235 59.1
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 7.9e-66 254.6 286 52.1
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 1.0e-65 254.2 259 54.8
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 1.0e-65 254.2 288 51.4
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 1.3e-65 253.8 251 55.4
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 1.8e-65 253.4 250 56.4
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 1.8e-65 253.4 205 63.9
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 2.3e-65 253.1 226 58.8
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 3.0e-65 252.7 250 56.4
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 3.0e-65 252.7 235 59.1
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 3.9e-65 252.3 254 57.1
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 1.9e-64 250.0 253 54.2
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 3.3e-64 249.2 261 53.6
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 3.3e-64 249.2 261 53.6
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 4.3e-64 248.8 189 65.6
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 5.7e-64 248.4 227 59.0
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 2.8e-63 246.1 229 57.6
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 3.7e-63 245.7 257 52.5
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 3.7e-63 245.7 257 52.5
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 1.4e-62 243.8 243 56.0
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 1.8e-62 243.4 246 54.5
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 5.3e-62 241.9 233 57.5
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 5.3e-62 241.9 255 52.5
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 5.9e-61 238.4 249 53.4
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 1.7e-60 236.9 229 54.6
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.7e-58 229.6 200 63.5
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 7.9e-58 228.0 165 70.9
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 1.1e-56 224.2 258 51.9
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.7e-55 220.3 227 55.9
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 5.3e-54 215.3 205 56.1
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 7.7e-53 211.5 183 59.6
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 1.0e-52 211.1 170 63.5
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 3.8e-52 209.1 230 50.0
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 9.4e-51 204.5 235 46.8
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 7.9e-50 201.4 232 49.1
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 1.8e-49 200.3 256 47.7
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 3.7e-47 192.6 242 47.5
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.7e-44 183.7 253 49.4
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 3.2e-43 179.5 177 54.8
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 2.7e-42 176.4 192 51.0
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 1.0e-41 174.5 166 54.8
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 3.7e-39 166.0 236 40.3
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 6.3e-39 165.2 123 65.9
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 2.9e-36 156.4 128 60.2
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 4.2e-35 152.5 198 48.0
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 8.8e-33 144.8 114 70.2
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 4.5e-29 132.5 239 35.6
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 1.0e-28 131.3 236 35.2
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.7e-28 130.6 206 41.7
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.7e-23 114.0 79 62.0
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 2.8e-23 113.2 115 47.8
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 3.7e-23 112.8 145 45.5
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 2.4e-22 110.2 176 42.0
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 7.0e-22 108.6 129 48.1
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 1.6e-21 107.5 116 48.3
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 1.6e-21 107.5 116 48.3
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 1.6e-21 107.5 116 48.3
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.6e-21 107.5 129 48.1
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 3.5e-21 106.3 128 47.7
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 1.8e-17 94.0 99 49.5
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 2.4e-14 83.6 155 42.6
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 2.0e-13 80.5 99 43.4
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 2.5e-11 73.6 252 27.0
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 3.3e-11 73.2 193 31.1
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 8.9e-09 65.1 44 65.9
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.7e-07 60.8 59 55.9
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 9.2e-06 55.1 72 47.2


User provided reference genes

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