Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac4g09984 Beta vulgaris HOM05D007771 ORTHO05D009850 1.2e-28 129.0 61 100.0
EL10Ac4g07508 Beta vulgaris HOM05D007771 ORTHO05D009850 8.8e-11 69.7 35 82.9
Medtr5g096780 Medicago truncatula HOM05D007771 ORTHO05D009850 2.0e-10 68.6 36 80.6
Lalb_Chr17g0349031 Lupinus albus HOM05D007771 ORTHO05D009850 5.7e-10 67.0 36 80.6
MD11G1040400 Malus domestica HOM05D007771 ORTHO05D009850 9.7e-10 66.2 36 75.0
Medtr5g096760 Medicago truncatula HOM05D007771 ORTHO05D009850 1.3e-09 65.9 36 80.6
Thecc.07G005300 Theobroma cacao HOM05D007771 ORTHO05D009850 1.7e-09 65.5 36 77.8
arahy.Tifrunner.gnm1.ann1.0J0D7Z Arachis hypogaea HOM05D007771 ORTHO05D009850 2.8e-09 64.7 36 77.8
arahy.Tifrunner.gnm1.ann1.29L1CF Arachis hypogaea HOM05D007771 ORTHO05D009850 2.8e-09 64.7 36 77.8
arahy.Tifrunner.gnm1.ann1.YJMT2M Arachis hypogaea HOM05D007771 ORTHO05D009850 2.8e-09 64.7 36 77.8
Thhalv10022324m.g Eutrema salsugineum HOM05D007771 ORTHO05D009850 2.8e-09 64.7 47 63.8
MD03G1039700 Malus domestica HOM05D007771 ORTHO05D009850 2.8e-09 64.7 36 72.2
Sopen07g034140 Solanum pennellii HOM05D007771 ORTHO05D009850 2.8e-09 64.7 36 75.0
Cfa016941 Carpinus fangiana HOM05D007771 ORTHO05D009850 3.7e-09 64.3 36 77.8
PGSC0003DMG400022153 Solanum tuberosum HOM05D007771 ORTHO05D009850 4.8e-09 63.9 36 72.2
CAN.G623.52 Capsicum annuum HOM05D007771 ORTHO05D009850 8.2e-09 63.2 36 72.2
FAN11G2649 Fragaria x ananassa HOM05D007771 ORTHO05D009850 8.2e-09 63.2 36 72.2
QL08p001590 Quercus lobata HOM05D007771 ORTHO05D009850 8.2e-09 63.2 36 77.8
ClCG10G004130 Citrullus lanatus HOM05D007771 ORTHO05D009850 1.1e-08 62.8 36 75.0
Phvul.008G282400 Phaseolus vulgaris HOM05D007771 ORTHO05D009850 1.4e-08 62.4 36 72.2
A08p00340 Brassica napus HOM05D007771 ORTHO05D009850 1.8e-08 62.0 41 65.9
CiPaw.11G208800 Carya illinoinensis HOM05D007771 ORTHO05D009850 1.8e-08 62.0 36 77.8
TWI39G0067 Tripterygium wilfordii HOM05D007771 ORTHO05D009850 1.8e-08 62.0 36 75.0
MELO3C014083.2 Cucumis melo HOM05D007771 ORTHO05D009850 2.4e-08 61.6 36 75.0
Duzib268G1197 Durio zibethinus HOM05D007771 ORTHO05D009850 2.4e-08 61.6 36 72.2
Glyma.02G303200 Glycine max HOM05D007771 ORTHO05D009850 2.4e-08 61.6 36 72.2
Glyma.14G010700 Glycine max HOM05D007771 ORTHO05D009850 4.1e-08 60.8 36 72.2
BcaC05g29197 Brassica carinata HOM05D007771 ORTHO05D009850 5.3e-08 60.5 36 80.6
C05p54690 Brassica napus HOM05D007771 ORTHO05D009850 5.3e-08 60.5 36 80.6
BolC1t05126H Brassica oleracea HOM05D007771 ORTHO05D009850 5.3e-08 60.5 36 80.6
BolC5t34139H Brassica oleracea HOM05D007771 ORTHO05D009850 5.3e-08 60.5 36 80.6
BraA05t22434Z Brassica rapa HOM05D007771 ORTHO05D009850 5.3e-08 60.5 36 80.6
CANSAT11G2411 Cannabis sativa HOM05D007771 ORTHO05D009850 5.3e-08 60.5 36 69.4
Manes.02G224000 Manihot esculenta HOM05D007771 ORTHO05D009850 5.3e-08 60.5 36 72.2
BcaB06g25475 Brassica carinata HOM05D007771 ORTHO05D009850 6.9e-08 60.1 36 80.6
A05p36330 Brassica napus HOM05D007771 ORTHO05D009850 6.9e-08 60.1 36 77.8
Cc05_g15490 Coffea canephora HOM05D007771 ORTHO05D009850 6.9e-08 60.1 36 75.0
AT3G13275 Arabidopsis thaliana HOM05D007771 ORTHO05D009850 9.1e-08 59.7 36 77.8
Carub.0003s1266 Capsella rubella HOM05D007771 ORTHO05D009850 9.1e-08 59.7 36 77.8
CARHR087900 Cardamine hirsuta HOM05D007771 ORTHO05D009850 9.1e-08 59.7 36 77.8
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 1.2e-07 59.3 36 75.0
Migut.H01728 Erythranthe guttata HOM05D007771 ORTHO05D009850 1.2e-07 59.3 36 66.7
Gohir.D05G386700 Gossypium hirsutum HOM05D007771 ORTHO05D009850 1.2e-07 59.3 36 75.0
LjContig00081g0001678 Lotus japonicus HOM05D007771 ORTHO05D009850 1.2e-07 59.3 36 69.4
Potri.001G469401 Populus trichocarpa HOM05D007771 ORTHO05D009850 1.2e-07 59.3 36 72.2
Potri.007G107500 Populus trichocarpa HOM05D007771 ORTHO05D009850 1.2e-07 59.3 36 66.7
TAR627G1191 Trochodendron aralioides HOM05D007771 ORTHO05D009850 1.2e-07 59.3 43 67.4
Manes.05G206300 Manihot esculenta HOM05D007771 ORTHO05D009850 1.5e-07 58.9 36 69.4
PGR083G2136 Punica granatum HOM05D007771 ORTHO05D009850 1.5e-07 58.9 35 74.3
AL3G25100 Arabidopsis lyrata HOM05D007771 ORTHO05D009850 2.0e-07 58.5 36 75.0
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 2.0e-07 58.5 36 75.0
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 2.0e-07 58.5 36 75.0
BolC3t16896H Brassica oleracea HOM05D007771 ORTHO05D009850 2.0e-07 58.5 36 72.2
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 2.0e-07 58.5 36 75.0
Sp3g11480 Schrenkiella parvula HOM05D007771 ORTHO05D009850 2.0e-07 58.5 36 75.0
Sed0026400 Sechium edule HOM05D007771 ORTHO05D009850 2.0e-07 58.5 36 69.4
Eucgr.F03660 Eucalyptus grandis HOM05D007771 ORTHO05D009850 3.4e-07 57.8 36 63.9
RcHm_v2.0_Chr5g0075191 Rosa chinensis HOM05D007771 ORTHO05D009850 3.4e-07 57.8 36 69.4
BcaB04g16929 Brassica carinata HOM05D007771 ORTHO05D009850 4.5e-07 57.4 36 69.4
Potri.005G061200 Populus trichocarpa HOM05D007771 ORTHO05D009850 4.5e-07 57.4 36 61.1
BcaC01g01562 Brassica carinata HOM05D007771 ORTHO05D009850 5.9e-07 57.0 36 69.4
C03p93160 Brassica napus HOM05D007771 ORTHO05D009850 5.9e-07 57.0 36 69.4
BolC3t21615H Brassica oleracea HOM05D007771 ORTHO05D009850 5.9e-07 57.0 36 69.4
BraA08t32092Z Brassica rapa HOM05D007771 ORTHO05D009850 5.9e-07 57.0 36 69.4
TPR.G1243 Trifolium pratense HOM05D007771 ORTHO05D009850 7.7e-07 56.6 36 63.9
C03p46260 Brassica napus HOM05D007771 ORTHO05D009850 1.0e-06 56.2 36 69.4
Solyc07g065940.1 Solanum lycopersicum HOM05D007771 ORTHO05D009850 1.0e-06 56.2 30 80.0
CARHR045420 Cardamine hirsuta HOM05D007771 ORTHO05D009850 1.7e-06 55.5 36 72.2
MBI15_g00878_MAGBIO Magnolia biondii HOM05D007771 ORTHO05D009850 1.7e-06 55.5 37 70.3
AL1G63820 Arabidopsis lyrata HOM05D007771 ORTHO05D009850 2.2e-06 55.1 36 72.2
HanXRQChr03g0077771 Helianthus annuus HOM05D007771 ORTHO05D009850 2.2e-06 55.1 36 75.0
Atru.chr2.3846 Acer truncatum HOM05D007771 ORTHO05D009850 3.8e-06 54.3 36 66.7
Potri.011G166250 Populus trichocarpa HOM05D007771 ORTHO05D009850 5.0e-06 53.9 36 63.9
HanXRQChr13g0409141 Helianthus annuus HOM05D007771 ORTHO05D009850 6.5e-06 53.5 36 72.2
Ciclev10010110m.g Citrus clementina HOM05D007771 ORTHO05D009850 8.5e-06 53.1 36 69.4


User provided reference genes

Program Settings