Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 5.5e-26 120.6 78 100.0
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 4.7e-17 90.9 59 76.3
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 8.0e-17 90.1 55 80.0
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.3e-16 88.6 55 78.2
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 2.3e-16 88.6 55 78.2
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 4.0e-16 87.8 54 79.6
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 5.2e-16 87.4 55 78.2
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 8.9e-16 86.7 55 78.2
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 8.9e-16 86.7 55 78.2
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 8.9e-16 86.7 56 75.0
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 8.9e-16 86.7 55 76.4
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.2e-15 86.3 55 76.4
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 1.5e-15 85.9 55 76.4
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 2.0e-15 85.5 55 76.4
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 2.6e-15 85.1 55 76.4
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 2.6e-15 85.1 55 76.4
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 2.6e-15 85.1 55 76.4
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 2.6e-15 85.1 55 76.4
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.6e-15 85.1 55 74.5
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.6e-15 85.1 55 74.5
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 2.6e-15 85.1 55 74.5
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 3.4e-15 84.7 55 76.4
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 3.4e-15 84.7 55 76.4
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 3.4e-15 84.7 55 76.4
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 3.4e-15 84.7 55 76.4
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 3.4e-15 84.7 55 74.5
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 3.4e-15 84.7 55 74.5
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 3.4e-15 84.7 55 76.4
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 5.7e-15 84.0 54 75.9
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 5.7e-15 84.0 55 72.7
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 5.7e-15 84.0 55 72.7
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 5.7e-15 84.0 55 72.7
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 7.5e-15 83.6 55 72.7
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 7.5e-15 83.6 55 76.4
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 7.5e-15 83.6 54 75.9
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 7.5e-15 83.6 54 75.9
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 7.5e-15 83.6 55 74.5
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 7.5e-15 83.6 55 74.5
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 7.5e-15 83.6 55 74.5
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 7.5e-15 83.6 55 74.5
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 7.5e-15 83.6 55 74.5
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 7.5e-15 83.6 55 72.7
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 7.5e-15 83.6 55 72.7
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 7.5e-15 83.6 55 74.5
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 7.5e-15 83.6 55 72.7
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 7.5e-15 83.6 55 72.7
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 9.8e-15 83.2 55 72.7
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 9.8e-15 83.2 55 74.5
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 9.8e-15 83.2 55 74.5
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 9.8e-15 83.2 55 74.5
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 9.8e-15 83.2 55 74.5
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 9.8e-15 83.2 55 74.5
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 9.8e-15 83.2 54 74.1
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 9.8e-15 83.2 55 74.5
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 9.8e-15 83.2 55 74.5
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 9.8e-15 83.2 55 74.5
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 9.8e-15 83.2 55 72.7
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 9.8e-15 83.2 55 72.7
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 9.8e-15 83.2 55 74.5
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 9.8e-15 83.2 55 72.7
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 1.3e-14 82.8 55 74.5
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 1.3e-14 82.8 55 72.7
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 1.3e-14 82.8 55 72.7
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 1.3e-14 82.8 55 72.7
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 1.3e-14 82.8 55 72.7
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.3e-14 82.8 55 72.7
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 1.3e-14 82.8 55 72.7
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.7e-14 82.4 55 74.5
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 1.7e-14 82.4 55 70.9
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.7e-14 82.4 55 70.9
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.7e-14 82.4 55 70.9
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 1.7e-14 82.4 55 72.7
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 1.7e-14 82.4 55 72.7
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 1.7e-14 82.4 55 74.5
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 1.7e-14 82.4 55 72.7
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.7e-14 82.4 55 72.7
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 1.7e-14 82.4 55 72.7
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 1.7e-14 82.4 55 72.7
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 1.7e-14 82.4 55 74.5
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 2.2e-14 82.0 55 70.9
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 2.2e-14 82.0 55 70.9
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 2.2e-14 82.0 55 72.7
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 2.2e-14 82.0 55 72.7
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 2.2e-14 82.0 55 72.7
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 2.2e-14 82.0 54 75.9
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 2.2e-14 82.0 55 72.7
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 2.9e-14 81.6 55 72.7
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 2.9e-14 81.6 55 70.9
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 2.9e-14 81.6 55 70.9
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 2.9e-14 81.6 55 72.7
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 2.9e-14 81.6 55 70.9
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 2.9e-14 81.6 55 70.9
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 2.9e-14 81.6 55 70.9
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 2.9e-14 81.6 55 70.9
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 2.9e-14 81.6 55 72.7
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 3.7e-14 81.3 55 72.7
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 3.7e-14 81.3 55 72.7
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 3.7e-14 81.3 55 72.7
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 3.7e-14 81.3 55 72.7
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 3.7e-14 81.3 55 72.7
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 4.9e-14 80.9 55 69.1
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 4.9e-14 80.9 52 75.0
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 4.9e-14 80.9 55 70.9
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 4.9e-14 80.9 55 70.9
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 4.9e-14 80.9 55 70.9
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 4.9e-14 80.9 55 70.9
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 6.3e-14 80.5 55 72.7
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 6.3e-14 80.5 55 70.9
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 6.3e-14 80.5 55 72.7
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 8.3e-14 80.1 54 75.9
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 8.3e-14 80.1 54 75.9
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 8.3e-14 80.1 54 75.9
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 8.3e-14 80.1 55 69.1
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 1.1e-13 79.7 55 69.1
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 1.1e-13 79.7 55 67.3
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 1.1e-13 79.7 55 69.1
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.1e-13 79.7 55 69.1
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 1.1e-13 79.7 55 69.1
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.1e-13 79.7 55 67.3
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 1.1e-13 79.7 55 67.3
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 1.4e-13 79.3 55 67.3
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 1.4e-13 79.3 55 67.3
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.4e-13 79.3 55 69.1
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 1.8e-13 79.0 52 73.1
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 2.4e-13 78.6 55 69.1
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 2.4e-13 78.6 59 72.9
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 3.2e-13 78.2 55 67.3
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 4.1e-13 77.8 55 69.1
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 5.4e-13 77.4 55 63.6
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 7.0e-13 77.0 55 69.1
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 9.2e-13 76.6 55 65.5
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 9.2e-13 76.6 52 71.2
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 1.6e-12 75.9 54 70.4
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.6e-12 75.9 55 67.3
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 2.0e-12 75.5 55 72.7
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 5.9e-12 73.9 55 63.6
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.0e-11 73.2 55 63.6
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 6.6e-11 70.5 55 67.3
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 6.6e-11 70.5 55 67.3
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 6.6e-11 70.5 52 61.5
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 1.9e-10 68.9 55 60.0
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 9.5e-10 66.6 37 86.5
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 1.6e-09 65.9 37 86.5
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 1.6e-09 65.9 55 60.0
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 2.8e-09 65.1 37 83.8
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 3.6e-09 64.7 55 54.5
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 1.4e-08 62.8 55 50.9
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 1.8e-08 62.4 55 56.4
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 1.8e-08 62.4 37 78.4
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 5.2e-08 60.8 37 75.7
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 2.0e-07 58.9 55 47.3
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 4.4e-07 57.8 55 49.1
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 4.4e-07 57.8 49 55.1
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 3.7e-06 54.7 55 47.3


User provided reference genes

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