Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 4.8e-171 604.4 295 100.0
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 5.9e-137 491.1 295 80.0
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 4.8e-123 444.9 295 72.2
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 1.7e-112 409.8 291 68.0
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 1.3e-107 393.7 238 77.3
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 3.9e-104 382.1 297 64.6
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 1.9e-103 379.8 299 62.9
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 4.3e-103 378.6 262 69.5
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 1.6e-102 376.7 299 61.2
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 4.7e-102 375.2 290 63.1
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 1.8e-101 373.2 296 63.5
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 2.3e-101 372.9 299 62.9
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 4.0e-101 372.1 294 61.9
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 1.5e-100 370.2 300 61.7
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.5e-100 370.2 299 60.2
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 2.6e-100 369.4 295 62.0
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 6.4e-99 364.8 292 61.6
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 6.4e-99 364.8 290 61.4
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.1e-98 364.0 292 61.6
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.4e-98 363.6 292 62.0
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 3.2e-98 362.5 292 61.3
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 6.0e-97 358.2 288 60.4
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 1.0e-96 357.5 278 59.7
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 1.3e-96 357.1 285 60.7
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 1.7e-96 356.7 294 59.9
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 3.9e-96 355.5 290 60.0
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 3.9e-96 355.5 292 61.0
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 5.1e-96 355.1 292 59.9
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 5.1e-96 355.1 270 63.0
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 6.6e-96 354.8 300 59.0
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 8.6e-96 354.4 300 59.0
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 8.6e-96 354.4 293 61.1
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.1e-95 354.0 282 60.6
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 3.3e-95 352.4 288 60.4
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 4.3e-95 352.1 294 58.8
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 4.3e-95 352.1 294 58.8
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 5.6e-95 351.7 296 59.1
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 7.3e-95 351.3 291 58.4
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 7.3e-95 351.3 291 59.1
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 9.5e-95 350.9 296 57.1
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 2.1e-94 349.7 292 62.0
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 2.1e-94 349.7 292 59.2
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 3.6e-94 349.0 293 59.4
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 3.6e-94 349.0 270 61.9
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 4.7e-94 348.6 298 57.0
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 6.2e-94 348.2 287 58.5
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 6.2e-94 348.2 298 58.1
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 1.1e-93 347.4 272 61.8
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 2.3e-93 346.3 296 56.4
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 3.1e-93 345.9 292 58.9
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 6.8e-93 344.7 284 58.8
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 6.8e-93 344.7 285 58.2
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 6.8e-93 344.7 299 57.5
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 6.8e-93 344.7 266 62.0
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 8.9e-93 344.4 295 58.0
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 1.2e-92 344.0 290 57.6
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 2.6e-92 342.8 288 58.7
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 2.6e-92 342.8 278 58.6
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 4.4e-92 342.0 292 57.2
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 4.4e-92 342.0 290 58.3
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 5.8e-92 341.7 298 58.1
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 7.5e-92 341.3 286 59.8
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 2.2e-91 339.7 301 56.5
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 2.2e-91 339.7 292 58.6
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 3.7e-91 339.0 275 60.7
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 8.3e-91 337.8 228 68.9
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 1.9e-90 336.7 290 58.3
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.9e-90 336.7 300 55.3
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 2.4e-90 336.3 241 65.1
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 2.4e-90 336.3 285 57.2
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 3.2e-90 335.9 287 58.2
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 9.2e-90 334.3 262 63.0
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 2.7e-89 332.8 288 57.6
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 4.6e-89 332.0 270 58.5
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 1.0e-88 330.9 254 61.0
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.3e-88 330.5 287 57.8
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 1.7e-88 330.1 293 58.0
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 3.0e-88 329.3 296 56.4
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 3.9e-88 328.9 289 55.4
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 6.6e-88 328.2 310 53.5
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 6.6e-88 328.2 250 60.4
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 4.3e-87 325.5 274 56.6
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 1.2e-86 323.9 254 59.8
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 2.4e-85 319.7 283 53.4
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 2.9e-83 312.8 281 55.9
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 1.1e-82 310.8 296 52.4
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 1.6e-81 307.0 265 57.0
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 1.7e-80 303.5 270 55.9
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.5e-79 300.4 247 59.5
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 8.1e-78 294.7 250 53.6
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 5.3e-77 292.0 269 54.3
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 8.4e-75 284.6 278 51.8
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 5.3e-69 265.4 290 45.2
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 1.3e-64 250.8 269 48.3
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 1.3e-64 250.8 269 48.3
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 3.9e-64 249.2 269 48.0
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 5.1e-64 248.8 269 46.8
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 1.5e-63 247.3 269 51.3
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 1.9e-63 246.9 276 47.1
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 4.3e-63 245.7 281 48.0
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 5.6e-63 245.4 277 47.3
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 1.3e-62 244.2 270 47.0
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 4.8e-62 242.3 266 46.6
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 1.4e-61 240.7 266 45.5
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 3.1e-61 239.6 269 45.7
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 4.0e-61 239.2 269 45.4
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 5.8e-60 235.3 278 44.2
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 5.8e-60 235.3 270 44.4
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 7.6e-60 235.0 266 45.5
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 2.9e-59 233.0 274 45.3
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 6.4e-59 231.9 269 45.7
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 6.4e-59 231.9 253 44.3
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 1.4e-58 230.7 275 42.2
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 7.1e-58 228.4 287 45.6
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 7.1e-58 228.4 273 41.4
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 9.7e-47 191.4 235 41.7
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 3.7e-46 189.5 237 42.2
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.4e-45 186.8 195 47.2
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 2.2e-43 180.3 287 34.1
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 5.0e-43 179.1 222 41.4
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 1.8e-40 170.6 266 42.1
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 3.9e-40 169.5 278 35.6
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 9.7e-39 164.9 182 47.3
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 1.4e-37 161.0 198 46.0
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 5.3e-37 159.1 239 41.0
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 6.9e-37 158.7 186 47.3
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 1.5e-36 157.5 244 40.2
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 3.4e-36 156.4 202 46.0
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 7.7e-36 155.2 198 45.5
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 1.0e-35 154.8 198 43.4
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 1.1e-34 151.4 198 42.4
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 4.2e-34 149.4 198 42.9
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 2.0e-31 140.6 254 38.2
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 4.4e-31 139.4 155 47.7
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 1.7e-30 137.5 145 48.3
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.1e-29 133.3 137 45.3
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 1.0e-27 128.3 145 47.6
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 2.7e-25 120.2 86 64.0
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 2.0e-23 114.0 198 38.9
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 2.0e-23 114.0 198 38.9
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 2.2e-22 110.5 174 36.2
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 8.5e-19 98.6 180 32.8
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 1.5e-18 97.8 86 53.5
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 9.4e-18 95.1 141 43.3
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 6.3e-14 82.4 69 58.0
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 2.2e-11 73.9 64 50.0
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 2.2e-11 73.9 64 50.0
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 4.2e-10 69.7 75 45.3
Cre06.g258000 Chlamydomonas reinhardtii HOM05D004840 ORTHO05D005751 2.7e-09 67.0 163 27.0


User provided reference genes

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