Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2488.0 1254 100.0
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 2196.0 1286 84.9
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 0.0e+00 2131.3 1287 82.2
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 0.0e+00 2130.1 1287 83.1
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 0.0e+00 2127.8 1301 81.7
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 0.0e+00 2122.8 1286 81.8
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2118.2 1286 81.4
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 0.0e+00 2116.3 1287 81.8
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 0.0e+00 2115.9 1287 82.0
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 0.0e+00 2115.5 1286 81.3
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2111.6 1286 81.1
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 0.0e+00 2106.3 1287 81.6
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 0.0e+00 2104.3 1286 81.8
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 0.0e+00 2098.9 1292 80.7
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 0.0e+00 2097.4 1286 80.9
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 2095.9 1292 81.7
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 0.0e+00 2095.1 1283 80.9
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2093.2 1287 81.2
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 0.0e+00 2090.5 1286 81.1
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 0.0e+00 2087.8 1287 80.7
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 0.0e+00 2087.4 1283 81.0
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 0.0e+00 2087.0 1287 81.3
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 0.0e+00 2082.4 1288 81.5
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2079.3 1290 81.1
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2078.1 1281 81.0
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2077.8 1300 80.3
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2077.8 1287 81.1
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2075.4 1287 80.8
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 0.0e+00 2074.3 1222 85.8
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 0.0e+00 2072.7 1279 80.9
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 0.0e+00 2072.4 1280 80.5
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2071.6 1281 80.8
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 0.0e+00 2069.7 1287 80.3
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2064.3 1317 78.8
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 0.0e+00 2064.3 1283 80.7
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 0.0e+00 2063.1 1284 79.9
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 0.0e+00 2062.0 1286 80.0
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2062.0 1281 80.3
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 0.0e+00 2060.8 1300 79.4
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 0.0e+00 2059.3 1288 80.3
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 0.0e+00 2058.5 1279 79.8
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 0.0e+00 2057.0 1284 79.6
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 0.0e+00 2056.6 1284 79.8
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2056.6 1299 79.5
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 0.0e+00 2054.6 1293 79.6
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 0.0e+00 2053.5 1284 79.4
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 0.0e+00 2053.1 1282 80.0
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 0.0e+00 2051.2 1285 79.8
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2050.8 1299 79.2
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 0.0e+00 2050.0 1288 79.3
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 0.0e+00 2046.9 1293 78.9
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2045.4 1287 78.5
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 0.0e+00 2040.0 1281 79.1
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 0.0e+00 2038.8 1294 79.7
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 0.0e+00 2035.8 1287 78.1
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 0.0e+00 2033.5 1296 78.4
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 0.0e+00 2030.8 1288 78.3
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2026.1 1287 78.1
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 0.0e+00 2024.6 1286 82.4
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 0.0e+00 2018.8 1304 77.7
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 0.0e+00 2016.1 1287 78.5
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 0.0e+00 2012.3 1287 77.9
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2010.0 1285 78.8
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2007.3 1283 78.8
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2006.1 1286 77.6
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 1996.1 1286 77.3
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 1995.3 1297 77.3
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 1991.9 1298 77.2
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1974.5 1289 77.7
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 0.0e+00 1973.0 1297 76.6
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 0.0e+00 1960.7 1307 76.7
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 1917.5 1410 71.3
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 0.0e+00 1914.8 1212 78.2
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1867.4 1542 65.2
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 0.0e+00 1862.4 1292 72.4
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 0.0e+00 1861.7 1282 74.3
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 0.0e+00 1855.1 1174 78.8
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 0.0e+00 1846.2 1287 71.3
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 0.0e+00 1549.6 947 81.5
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 0.0e+00 1548.5 960 80.9
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1513.0 940 79.4
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 0.0e+00 1493.4 1209 63.4
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 0.0e+00 1491.5 1069 71.7
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 0.0e+00 1482.2 1285 58.4
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 0.0e+00 1472.2 1282 57.9
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1465.3 1327 55.3
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 0.0e+00 1457.2 935 77.6
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1454.5 907 78.7
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 0.0e+00 1439.1 907 78.3
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 0.0e+00 1424.5 1287 55.6
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 0.0e+00 1422.9 1177 62.7
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 0.0e+00 1411.0 909 77.7
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 0.0e+00 1406.3 907 77.3
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 0.0e+00 1392.9 836 81.2
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 0.0e+00 1339.3 911 73.8
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1310.4 1304 51.5
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 0.0e+00 1295.0 954 69.2
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 0.0e+00 1241.1 917 67.4
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 3.0e-307 1058.9 687 78.0
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 5.9e-295 1018.1 827 66.9
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 5.6e-229 798.9 803 55.2
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 4.9e-225 785.8 480 84.8
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 6.7e-222 775.4 471 83.7
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 3.8e-193 679.9 451 77.4
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 3.9e-182 643.3 542 62.4
Actinidia03824 Actinidia chinensis HOM05D002281 ORTHO05D005599 5.2e-174 616.3 350 88.6
RcHm_v2.0_Chr3g0448911 Rosa chinensis HOM05D002281 ORTHO05D005599 2.9e-169 600.5 345 88.4
CAN.G61.6 Capsicum annuum HOM05D002281 ORTHO05D005599 1.9e-168 597.8 345 87.8
Lalb_Chr18g0044191 Lupinus albus HOM05D002281 ORTHO05D005599 6.1e-167 592.8 345 86.7
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.0e-165 587.8 400 71.5
ATR0787G220 Amborella trichopoda HOM05D002281 ORTHO05D005599 5.4e-163 579.7 345 85.2
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.3e-161 575.1 451 64.3
ClCG03G011400 Citrullus lanatus HOM05D002281 ORTHO05D005599 2.0e-157 561.2 345 83.5
CsaV3_1G040370 Cucumis sativus L. HOM05D002281 ORTHO05D005599 6.6e-153 546.2 345 81.4
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 1.1e-147 528.9 335 77.9
vmacro19963 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 1.7e-140 505.0 418 66.7
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 1.2e-138 498.8 637 42.5
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.6e-138 498.4 374 66.8
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 1.3e-137 495.4 302 79.8
Peaxi162Scf00285g00225 Petunia axillaris HOM05D002281 ORTHO05D005599 1.2e-135 488.8 272 90.4
DCAR_005525 Daucus carota HOM05D002281 ORTHO05D005599 4.2e-123 447.2 251 89.2
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 9.0e-118 429.5 410 57.8
Haze_04492 Corylus avellana HOM05D002281 ORTHO05D005599 1.9e-112 411.8 272 79.4
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 1.6e-111 408.7 301 66.8
Lj2A49G34 Lonicera japonica HOM05D002281 ORTHO05D005599 3.4e-109 401.0 243 80.2
HPP92_013015 Vanilla planifolia HOM05D002281 ORTHO05D005599 5.8e-109 400.2 345 62.0
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 9.6e-104 382.9 260 77.7
arahy.Tifrunner.gnm1.ann1.I7KFZB Arachis hypogaea HOM05D002281 ORTHO05D005599 2.0e-101 375.2 266 76.3
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.5e-83 315.1 266 59.4
Hma1.2p1_0153F.1_g067900 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 1.4e-73 282.7 154 90.9
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 1.5e-69 269.2 463 32.8
vmacro19965 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 1.1e-67 263.1 166 75.3
Ah.06g188770 Amaranthus hybridus HOM05D002281 ORTHO05D005599 1.2e-66 259.6 134 96.3
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 6.5e-60 237.3 426 38.3
Cc10_g10600 Coffea canephora HOM05D002281 ORTHO05D005599 6.8e-57 227.3 130 87.7
Lj2A50T26 Lonicera japonica HOM05D002281 ORTHO05D005599 2.6e-56 225.3 134 81.3
SHI14432 Sapria himalayana HOM05D002281 ORTHO05D005599 2.8e-55 221.9 142 73.2
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 8.5e-52 210.3 127 82.7
Lj2A49T38 Lonicera japonica HOM05D002281 ORTHO05D005599 4.7e-50 204.5 119 80.7
CDE02G3044 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.4e-41 176.4 127 64.6
CBR_g74560 Chara braunii HOM05D002281 ORTHO05D005599 1.4e-41 176.4 161 55.9
BraA03t10210Z Brassica rapa HOM05D002281 ORTHO05D005599 2.6e-40 172.2 123 72.4
A03p08860 Brassica napus HOM05D002281 ORTHO05D005599 1.9e-35 156.0 123 67.5
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 1.9e-35 156.0 128 68.8
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 7.3e-35 154.1 126 60.3
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 4.7e-34 151.4 126 59.5
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.3e-33 149.1 113 63.7
SEGI_33538 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 3.3e-27 128.6 95 56.8
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 8.1e-26 124.0 85 67.1
Gohir.D11G253550 Gossypium hirsutum HOM05D002281 ORTHO05D005599 2.0e-24 119.4 75 76.0
Gorai.007G272500 Gossypium raimondii HOM05D002281 ORTHO05D005599 2.0e-24 119.4 75 74.7
SHI14427 Sapria himalayana HOM05D000030 ORTHO05D000009 9.8e-24 117.1 130 51.5
Nn6g32299 Nelumbo nucifera HOM05D002281 ORTHO05D005599 6.4e-23 114.4 74 74.3
Gohir.A11G244201 Gossypium hirsutum HOM05D002281 ORTHO05D005599 4.6e-21 108.2 72 70.8
arahy.Tifrunner.gnm1.ann1.57298L Arachis hypogaea HOM05D002281 ORTHO05D005599 9.9e-16 90.5 99 53.5
HPP92_013017 Vanilla planifolia HOM05D002281 ORTHO05D005599 4.9e-15 88.2 54 77.8
QL06p040095 Quercus lobata HOM05D002281 ORTHO05D005599 4.3e-11 75.1 77 51.9
Ah.06g188760 Amaranthus hybridus HOM05D002281 ORTHO05D006774 3.1e-09 68.9 142 35.9
vmacro19964 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 9.3e-06 57.4 30 86.7


User provided reference genes

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