Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 1.6e-149 533.1 349 100.0
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 3.4e-43 179.9 391 46.0
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 1.2e-35 154.8 386 40.2
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 2.6e-35 153.7 352 43.2
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 2.2e-34 150.6 330 43.3
AUR62012019 Chenopodium quinoa HOM05D003648 ORTHO05D004267 8.5e-34 148.7 390 37.9
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 3.2e-33 146.7 349 43.6
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 4.2e-33 146.4 227 44.1
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 7.2e-33 145.6 370 34.1
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 1.6e-32 144.4 359 36.2
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 8.0e-32 142.1 363 35.5
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 1.0e-31 141.7 376 38.3
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 2.3e-31 140.6 366 35.5
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 3.0e-31 140.2 344 41.0
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 5.2e-31 139.4 358 44.7
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 2.6e-30 137.1 128 62.5
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 4.4e-30 136.3 353 34.6
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 5.7e-30 136.0 355 37.2
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 7.4e-30 135.6 372 38.2
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 7.4e-30 135.6 372 33.6
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 9.7e-30 135.2 237 49.8
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 9.7e-30 135.2 366 35.0
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 1.3e-29 134.8 369 36.0
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.7e-29 134.4 376 33.8
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 1.7e-29 134.4 362 38.4
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 1.7e-29 134.4 383 37.9
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 1.7e-29 134.4 355 42.5
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 2.2e-29 134.0 417 31.7
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 2.2e-29 134.0 335 40.9
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 2.2e-29 134.0 343 40.5
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 2.8e-29 133.7 350 36.3
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 3.7e-29 133.3 369 37.4
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 4.8e-29 132.9 348 42.2
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 4.8e-29 132.9 376 33.8
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 4.8e-29 132.9 342 36.8
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 4.8e-29 132.9 360 34.2
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 6.3e-29 132.5 387 38.2
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 6.3e-29 132.5 385 33.5
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 6.3e-29 132.5 354 34.7
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 8.2e-29 132.1 377 34.2
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 8.2e-29 132.1 350 33.1
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.4e-28 131.3 371 34.2
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 1.4e-28 131.3 367 37.3
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 2.4e-28 130.6 385 35.6
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 2.4e-28 130.6 335 37.0
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 4.1e-28 129.8 217 49.8
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 5.3e-28 129.4 135 56.3
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 9.1e-28 128.6 209 41.6
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 9.1e-28 128.6 379 35.4
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.2e-27 128.3 222 40.5
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 1.2e-27 128.3 211 41.7
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 1.6e-27 127.9 213 42.3
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 1.6e-27 127.9 371 35.3
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 1.6e-27 127.9 358 37.7
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 1.6e-27 127.9 409 34.2
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 2.0e-27 127.5 392 37.5
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 2.0e-27 127.5 362 39.5
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 2.6e-27 127.1 219 42.5
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 3.5e-27 126.7 353 33.7
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 5.9e-27 125.9 377 35.8
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 5.9e-27 125.9 392 38.0
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 7.7e-27 125.6 407 34.2
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 1.0e-26 125.2 381 37.3
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.0e-26 125.2 353 33.4
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 2.2e-26 124.0 211 40.8
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 2.9e-26 123.6 350 39.7
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 6.5e-26 122.5 206 42.2
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 6.5e-26 122.5 341 36.7
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 8.5e-26 122.1 219 39.3
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 1.1e-25 121.7 230 39.6
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 1.1e-25 121.7 248 36.3
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.1e-25 121.7 363 39.4
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 1.5e-25 121.3 361 31.9
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 1.9e-25 120.9 134 54.5
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 1.9e-25 120.9 374 38.8
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 2.5e-25 120.6 218 39.9
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 2.5e-25 120.6 363 35.8
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 4.2e-25 119.8 210 38.6
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 5.5e-25 119.4 425 30.6
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 2.7e-24 117.1 392 37.2
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 2.7e-24 117.1 133 46.6
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 3.6e-24 116.7 210 39.5
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 4.7e-24 116.3 239 44.8
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 4.7e-24 116.3 210 42.9
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 6.1e-24 115.9 341 37.0
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 6.1e-24 115.9 231 35.5
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 1.0e-23 115.2 149 61.7
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 1.8e-23 114.4 135 48.1
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.8e-23 114.4 378 37.6
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 3.0e-23 113.6 126 50.8
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 5.2e-23 112.8 214 38.8
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 6.7e-23 112.5 201 48.3
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 1.5e-22 111.3 347 36.6
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 1.5e-22 111.3 207 46.4
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.5e-22 111.3 221 42.1
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 3.3e-22 110.2 213 38.0
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 5.7e-22 109.4 357 30.0
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 1.7e-21 107.8 216 38.4
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 2.2e-21 107.5 136 49.3
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 2.8e-21 107.1 128 49.2
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 4.8e-21 106.3 348 39.7
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 4.8e-21 106.3 333 34.2
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 4.8e-21 106.3 348 39.7
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 4.8e-21 106.3 348 39.7
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 6.3e-21 105.9 354 38.4
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 8.2e-21 105.5 334 34.4
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 8.2e-21 105.5 354 38.4
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 8.2e-21 105.5 126 48.4
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 8.2e-21 105.5 131 49.6
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 1.1e-20 105.1 441 33.1
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 1.1e-20 105.1 269 33.5
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 1.1e-20 105.1 210 37.6
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 1.4e-20 104.8 335 33.1
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 1.8e-20 104.4 334 41.0
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 1.8e-20 104.4 130 47.7
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 1.8e-20 104.4 225 36.9
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 3.1e-20 103.6 344 34.9
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 3.1e-20 103.6 126 47.6
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 4.1e-20 103.2 219 38.4
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 4.1e-20 103.2 122 51.6
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 5.3e-20 102.8 331 36.9
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 5.3e-20 102.8 337 36.5
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 7.0e-20 102.4 339 34.2
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 1.6e-19 101.3 225 36.4
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 2.0e-19 100.9 141 53.2
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 3.5e-19 100.1 125 47.2
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 3.5e-19 100.1 132 46.2
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 4.5e-19 99.8 120 49.2
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 4.5e-19 99.8 130 46.9
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 7.7e-19 99.0 120 50.0
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 1.0e-18 98.6 128 48.4
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 1.0e-18 98.6 141 46.1
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 1.3e-18 98.2 345 30.4
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 2.2e-18 97.4 117 50.4
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.9e-18 97.1 249 44.2
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 2.9e-18 97.1 336 30.1
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 4.2e-17 93.2 338 38.2
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 4.2e-17 93.2 131 45.8
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 4.2e-17 93.2 51 82.4
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 4.2e-17 93.2 152 40.8
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 3.6e-16 90.1 130 45.4
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 4.7e-16 89.7 128 43.0
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 4.7e-16 89.7 83 56.6
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 4.7e-16 89.7 83 56.6
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 6.1e-16 89.4 340 37.9
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 1.4e-15 88.2 130 42.3
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 1.8e-15 87.8 121 43.8
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 1.8e-15 87.8 103 49.5
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 3.0e-15 87.0 119 50.4
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 5.2e-15 86.3 41 87.8
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 6.8e-15 85.9 50 76.0
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.5e-14 84.7 117 45.3
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.5e-14 84.7 78 56.4
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.0e-14 84.3 56 75.0
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.6e-14 84.0 52 69.2
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 9.8e-14 82.0 149 40.9
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 2.4e-12 77.4 130 36.2
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 2.0e-11 74.3 67 55.2
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 4.5e-11 73.2 42 76.2
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.7e-10 71.2 55 61.8
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 2.3e-10 70.9 211 28.9
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.1e-09 68.6 70 55.7
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.5e-09 67.4 41 68.3
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 7.2e-09 65.9 39 71.8
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 3.6e-08 63.5 79 46.8
Rhsim03G0005000 Rhododendron simsii HOM05D003648 ORTHO05D014310 5.2e-07 59.7 219 31.1
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 1.2e-06 58.5 37 62.2


User provided reference genes

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