Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac3g06891 Beta vulgaris HOM05D007056 ORTHO05D008278 4.3e-161 571.2 281 100.0
AUR62011999 Chenopodium quinoa HOM05D007056 ORTHO05D008278 1.8e-130 469.5 281 82.2
AUR62015338 Chenopodium quinoa HOM05D007056 ORTHO05D008278 1.3e-122 443.4 262 84.0
Ah.04g152820 Amaranthus hybridus HOM05D007056 ORTHO05D008278 3.3e-121 438.7 260 81.9
Hund24814 Selenicereus undatus HOM05D007056 ORTHO05D008278 1.3e-104 383.6 267 73.0
Ciclev10012466m.g Citrus clementina HOM05D007056 ORTHO05D008278 5.9e-102 374.8 221 80.5
Duzib093G0790 Durio zibethinus HOM05D007056 ORTHO05D008278 1.3e-101 373.6 206 84.5
Potri.016G060000 Populus trichocarpa HOM05D007056 ORTHO05D008278 1.7e-101 373.2 260 68.8
Dinv16370 Davidia involucrata HOM05D007056 ORTHO05D008278 2.2e-101 372.9 208 83.7
CSS0008084 Camellia sinensis var. sinensis HOM05D007056 ORTHO05D008278 8.5e-101 370.9 247 74.1
RcHm_v2.0_Chr3g0479281 Rosa chinensis HOM05D007056 ORTHO05D008278 1.4e-100 370.2 216 79.6
Thecc.05G174400 Theobroma cacao HOM05D007056 ORTHO05D008278 1.4e-100 370.2 280 68.2
Actinidia38590 Actinidia chinensis HOM05D007056 ORTHO05D008278 1.9e-100 369.8 264 68.6
Gorai.012G099400 Gossypium raimondii HOM05D007056 ORTHO05D008278 2.5e-100 369.4 263 68.8
arahy.Tifrunner.gnm1.ann1.DK1M71 Arachis hypogaea HOM05D007056 ORTHO05D008278 7.2e-100 367.9 234 75.2
Lalb_Chr18g0048001 Lupinus albus HOM05D007056 ORTHO05D008278 7.2e-100 367.9 258 69.8
Nn2g15729 Nelumbo nucifera HOM05D007056 ORTHO05D008278 7.2e-100 367.9 280 66.4
Prupe.7G080200 Prunus persica HOM05D007056 ORTHO05D008278 7.2e-100 367.9 245 73.1
Cc06_g15700 Coffea canephora HOM05D007056 ORTHO05D008278 1.2e-99 367.1 244 71.3
Gohir.D04G089300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 1.6e-99 366.7 263 68.4
Lj1g0028043 Lotus japonicus HOM05D007056 ORTHO05D008278 2.1e-99 366.3 235 74.9
CiPaw.09G028900 Carya illinoinensis HOM05D007056 ORTHO05D008278 3.6e-99 365.5 261 69.7
CANSAT64G0992 Cannabis sativa HOM05D007056 ORTHO05D008278 4.6e-99 365.2 208 82.2
arahy.Tifrunner.gnm1.ann1.LTU6F0 Arachis hypogaea HOM05D007056 ORTHO05D008278 6.1e-99 364.8 234 74.8
Cfa020149 Carpinus fangiana HOM05D007056 ORTHO05D008278 1.4e-98 363.6 211 82.0
QL07p024320 Quercus lobata HOM05D007056 ORTHO05D008278 1.4e-98 363.6 275 67.3
QL07p024358 Quercus lobata HOM05D007056 ORTHO05D008278 1.4e-98 363.6 275 67.3
Ca_08534_v3 Cicer arietinum L. HOM05D007056 ORTHO05D008278 5.1e-98 361.7 238 74.4
CsaV3_3G038650 Cucumis sativus L. HOM05D007056 ORTHO05D008278 5.1e-98 361.7 257 70.8
MBI19_g17420_MAGBIO Magnolia biondii HOM05D007056 ORTHO05D008278 5.1e-98 361.7 221 78.3
ATR0598G297 Amborella trichopoda HOM05D007056 ORTHO05D008278 6.7e-98 361.3 204 81.4
Lj2A365G87 Lonicera japonica HOM05D007056 ORTHO05D008278 6.7e-98 361.3 201 82.6
PGR142G3072 Punica granatum HOM05D007056 ORTHO05D008278 1.1e-97 360.5 276 65.9
Cpa.g.sc85.61 Carica papaya HOM05D007056 ORTHO05D008278 2.0e-97 359.8 262 67.2
FAN09G4108 Fragaria x ananassa HOM05D007056 ORTHO05D008278 2.0e-97 359.8 217 79.3
Sabra16G0062800 Salix brachista HOM05D007056 ORTHO05D008278 2.0e-97 359.8 265 67.2
Aqoxy2G00097 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 2.6e-97 359.4 199 82.4
Atru.chr8.1149 Acer truncatum HOM05D007056 ORTHO05D008278 3.3e-97 359.0 217 78.8
Glyma.19G149400 Glycine max HOM05D007056 ORTHO05D008278 4.4e-97 358.6 193 85.0
Eucgr.K01848 Eucalyptus grandis HOM05D007056 ORTHO05D008278 7.4e-97 357.8 285 64.9
SGA_v2.0_scaffold69G23055 Striga asiatica HOM05D007056 ORTHO05D008278 9.7e-97 357.5 253 70.0
MD14G1054600 Malus domestica HOM05D007056 ORTHO05D008278 2.8e-96 355.9 278 66.2
TAR369G0080 Trochodendron aralioides HOM05D007056 ORTHO05D008278 2.8e-96 355.9 211 78.7
VMungo1383G1827 Vigna mungo HOM05D007056 ORTHO05D008278 2.8e-96 355.9 208 80.3
Os02g0774500 Oryza sativa ssp. japonica HOM05D007056 ORTHO05D008278 1.4e-95 353.6 193 85.5
CAN.G128.50 Capsicum annuum HOM05D007056 ORTHO05D008278 1.8e-95 353.2 232 76.3
TWI77G0776 Tripterygium wilfordii HOM05D007056 ORTHO05D008278 2.4e-95 352.8 246 68.7
Zm00001eb256530 Zea mays HOM05D007056 ORTHO05D008278 2.4e-95 352.8 193 85.0
Solyc10g080560.2 Solanum lycopersicum HOM05D007056 ORTHO05D008278 5.3e-95 351.7 265 68.7
FAN14G2508 Fragaria x ananassa HOM05D007056 ORTHO05D008278 6.9e-95 351.3 248 70.6
PGSC0003DMG400023706 Solanum tuberosum HOM05D007056 ORTHO05D008278 6.9e-95 351.3 248 71.8
Phvul.001G143900 Phaseolus vulgaris HOM05D007056 ORTHO05D008278 9.1e-95 350.9 196 82.7
Sopen10g031100 Solanum pennellii HOM05D007056 ORTHO05D008278 9.1e-95 350.9 264 67.8
THA.LOC104809936 Tarenaya hassleriana HOM05D007056 ORTHO05D008278 2.6e-94 349.4 226 73.5
BcaB06g25552 Brassica carinata HOM05D007056 ORTHO05D008278 4.5e-94 348.6 225 73.3
Thhalv10021378m.g Eutrema salsugineum HOM05D007056 ORTHO05D008278 4.5e-94 348.6 230 73.5
Sp3g10270 Schrenkiella parvula HOM05D007056 ORTHO05D008278 4.5e-94 348.6 230 73.5
Carub.0003s1138 Capsella rubella HOM05D007056 ORTHO05D008278 7.7e-94 347.8 230 73.0
BraA05t22526Z Brassica rapa HOM05D007056 ORTHO05D008278 1.0e-93 347.4 212 76.4
Medtr7g093540 Medicago truncatula HOM05D007056 ORTHO05D008278 1.0e-93 347.4 266 64.7
AT3G12040 Arabidopsis thaliana HOM05D007056 ORTHO05D008278 1.3e-93 347.1 254 66.9
Rhsim04G0094900 Rhododendron simsii HOM05D007056 ORTHO05D008278 1.3e-93 347.1 193 81.9
A05p37300 Brassica napus HOM05D007056 ORTHO05D008278 1.7e-93 346.7 212 76.4
COL.COLO4_05956 Corchorus olitorius HOM05D007056 ORTHO05D008278 1.7e-93 346.7 194 82.0
BcaC05g29295 Brassica carinata HOM05D007056 ORTHO05D008278 2.9e-93 345.9 212 75.9
Nitab4.5_0001079g0030 Nicotiana tabacum HOM05D007056 ORTHO05D008278 2.9e-93 345.9 284 64.1
HanXRQChr01g0010031 Helianthus annuus HOM05D007056 ORTHO05D008278 8.5e-93 344.4 203 77.8
AL3G23650 Arabidopsis lyrata HOM05D007056 ORTHO05D008278 1.4e-92 343.6 229 73.4
CARHR086600 Cardamine hirsuta HOM05D007056 ORTHO05D008278 2.5e-92 342.8 245 69.8
C05p55770 Brassica napus HOM05D007056 ORTHO05D008278 7.2e-92 341.3 213 75.6
BolC5t34244H Brassica oleracea HOM05D007056 ORTHO05D008278 7.2e-92 341.3 213 75.6
HPP92_004381 Vanilla planifolia HOM05D007056 ORTHO05D008278 1.6e-91 340.1 195 82.1
Peaxi162Scf00249g01221 Petunia axillaris HOM05D007056 ORTHO05D008278 3.0e-90 335.9 234 71.4
DCAR_019779 Daucus carota HOM05D007056 ORTHO05D008278 2.0e-89 333.2 227 70.5
unitig_27.g25110 Utricularia gibba HOM05D007056 ORTHO05D008278 2.6e-89 332.8 256 63.3
GSVIVG01033475001 Vitis vinifera HOM05D007056 ORTHO05D008278 3.3e-89 332.4 238 69.7
CDE06G2434 Ceratophyllum demersum HOM05D007056 ORTHO05D008278 4.4e-89 332.0 206 70.4
Lsat_1_v5_gn_5_165300 Lactuca sativa HOM05D007056 ORTHO05D008278 5.7e-89 331.6 235 69.4
SEGI_25756 Sequoiadendron giganteum HOM05D007056 ORTHO05D008278 5.7e-89 331.6 201 77.1
TPR.G35780 Trifolium pratense HOM05D007056 ORTHO05D008278 3.7e-88 328.9 213 73.2
AagrBONN_evm.TU.Sc2ySwM_344.2853 Anthoceros agrestis HOM05D007056 ORTHO05D008278 1.4e-87 327.0 193 77.2
SMO146G0068 Selaginella moellendorffii HOM05D007056 ORTHO05D008278 4.5e-86 322.0 239 65.7
Mapoly0003s0280 Marchantia polymorpha HOM05D007056 ORTHO05D008278 5.9e-86 321.6 193 75.1
Aa31sc80G100 Aethionema arabicum HOM05D007056 ORTHO05D008278 6.5e-85 318.2 196 74.5
Aqoxy3G01855 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 1.5e-81 307.0 241 63.1
Pp3c1_41490 Physcomitrium patens HOM05D007056 ORTHO05D008278 3.7e-80 302.4 196 71.9
PSO541G5037 Papaver somniferum HOM05D007056 ORTHO05D008278 8.2e-80 301.2 258 58.5
Psat3g067120 Pisum sativum HOM05D007056 ORTHO05D008278 3.1e-79 299.3 167 82.0
Oeu024494.3 Olea europaea HOM05D007056 ORTHO05D008278 4.1e-79 298.9 297 56.9
BcaB06g25551 Brassica carinata HOM05D007056 ORTHO05D008278 7.0e-79 298.1 164 82.9
PSO675G9168 Papaver somniferum HOM05D007056 ORTHO05D008278 7.0e-79 298.1 258 57.8
ECA248G2501 Erigeron canadensis HOM05D007056 ORTHO05D008278 5.9e-78 295.0 181 75.1
vmacro22110 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 7.7e-78 294.7 346 48.0
CBR_g48019 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-75 286.2 186 72.0
ECA248G2516 Erigeron canadensis HOM05D007056 ORTHO05D008278 1.0e-74 284.3 164 78.7
Sed0027134 Sechium edule HOM05D007056 ORTHO05D008278 3.5e-70 269.2 217 65.4
FvH4_6g21980 Fragaria vesca HOM05D007056 ORTHO05D008278 5.5e-68 261.9 196 68.4
Gohir.A04G057300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 2.2e-56 223.4 129 79.8
Migut.J01851 Erythranthe guttata HOM05D007056 ORTHO05D008278 3.7e-56 222.6 122 83.6
Psat3g067080 Pisum sativum HOM05D007056 ORTHO05D008278 1.1e-52 211.1 164 64.6
ECA248G3402 Erigeron canadensis HOM05D000009 ORTHO05D000008 1.2e-51 207.6 121 78.5
Psat3g067040 Pisum sativum HOM05D007056 ORTHO05D008278 1.4e-50 204.1 223 51.6
ClCG10G017660 Citrullus lanatus HOM05D007056 ORTHO05D008278 5.2e-50 202.2 213 54.5
Sc13g0002370 Simmondsia chinensis HOM05D007056 ORTHO05D008278 5.2e-50 202.2 174 64.4
Manes.08G042900 Manihot esculenta HOM05D007056 ORTHO05D008278 2.7e-46 189.9 183 55.7
MELO3C009610.2 Cucumis melo HOM05D007056 ORTHO05D008278 8.6e-45 184.9 246 45.9
Haze_20013 Corylus avellana HOM05D007056 ORTHO05D008278 4.3e-44 182.6 486 31.7
FAN02G0430 Fragaria x ananassa HOM05D007056 ORTHO05D008278 1.8e-42 177.2 121 72.7
Nitab4.5_0001440g0050 Nicotiana tabacum HOM05D007056 ORTHO05D008278 3.2e-39 166.4 94 79.8
Hma1.2p1_0645F.1_g194860 Hydrangea macrophylla HOM05D007056 ORTHO05D008278 1.3e-32 144.4 73 86.3
PRCOL_00003183 Prasinoderma coloniale HOM05D007056 ORTHO05D008278 2.9e-32 143.3 215 43.3
ECA233G2032 Erigeron canadensis HOM05D007056 ORTHO05D008278 4.3e-28 129.4 76 72.4
SHI31778 Sapria himalayana HOM05D007056 ORTHO05D008278 1.2e-27 127.9 72 77.8
vmacro22990 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 7.6e-17 92.0 96 50.0
SHI31775 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-07 60.8 60 51.7


User provided reference genes

Program Settings