Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 2.5e-231 805.1 403 100.0
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 2.2e-195 685.6 410 82.0
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.8e-184 649.4 408 79.7
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 5.7e-183 644.4 407 76.9
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 1.7e-182 642.9 407 76.7
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 3.8e-179 631.7 402 75.9
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 4.2e-178 628.2 409 74.1
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 9.4e-178 627.1 412 72.6
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 1.2e-177 626.7 409 74.3
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 3.6e-177 625.2 406 74.4
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 8.0e-177 624.0 409 73.6
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 3.0e-176 622.1 399 73.7
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 4.0e-176 621.7 406 73.2
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 5.2e-176 621.3 410 74.6
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 5.2e-176 621.3 406 74.6
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 6.7e-176 620.9 406 74.9
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 6.7e-176 620.9 406 74.9
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.5e-175 619.8 400 74.2
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 2.0e-175 619.4 409 73.3
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 5.7e-175 617.8 409 72.9
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.3e-174 616.7 410 76.8
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 2.2e-174 615.9 402 73.9
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.2e-174 615.9 402 73.9
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 4.8e-174 614.8 410 73.7
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 6.3e-174 614.4 402 75.1
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 1.1e-173 613.6 402 74.4
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 4.1e-173 611.7 409 72.6
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 9.1e-173 610.5 403 73.2
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 2.0e-172 609.4 410 72.7
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 7.7e-172 607.4 403 73.2
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 1.0e-171 607.1 404 72.3
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.3e-171 606.7 402 72.9
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 1.7e-171 606.3 409 71.4
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.7e-171 606.3 404 72.3
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.7e-171 606.3 402 72.4
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.7e-171 606.3 402 72.4
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 2.9e-171 605.5 404 72.0
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 3.8e-171 605.1 402 72.9
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 6.5e-171 604.4 407 72.7
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 8.5e-171 604.0 409 72.4
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 1.1e-170 603.6 409 70.9
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 3.2e-170 602.1 403 71.2
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 7.2e-170 600.9 405 73.6
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.2e-169 600.1 409 72.6
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 4.7e-169 598.2 402 71.1
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 4.7e-169 598.2 411 72.3
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 6.1e-169 597.8 392 73.5
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 8.0e-169 597.4 401 72.3
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 8.0e-169 597.4 392 73.5
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 1.0e-168 597.0 409 71.6
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 1.8e-168 596.3 408 71.6
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.8e-168 596.3 388 74.0
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 4.0e-168 595.1 406 71.4
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 9.8e-167 590.5 401 72.3
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 1.7e-166 589.7 402 70.6
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 2.2e-166 589.3 409 70.2
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.0e-163 580.5 405 70.4
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 1.0e-163 580.5 401 69.3
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 1.3e-163 580.1 401 69.8
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 2.9e-163 578.9 402 69.7
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 5.0e-163 578.2 409 68.7
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 8.5e-163 577.4 401 68.3
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 1.5e-162 576.6 401 68.1
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 1.5e-162 576.6 404 68.1
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 1.9e-162 576.2 409 70.4
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 1.9e-162 576.2 409 68.7
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 1.9e-162 576.2 412 71.1
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 3.2e-162 575.5 404 69.8
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 3.2e-162 575.5 410 68.8
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 4.2e-162 575.1 410 69.5
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 5.5e-162 574.7 402 70.1
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 3.6e-161 572.0 433 65.8
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 1.0e-160 570.5 402 68.7
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 1.4e-160 570.1 406 68.2
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 1.4e-160 570.1 403 68.7
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 1.8e-160 569.7 406 68.2
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 1.8e-160 569.7 410 69.0
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 4.0e-160 568.5 406 68.5
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 4.0e-160 568.5 406 68.5
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 4.0e-160 568.5 406 68.5
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 6.8e-160 567.8 400 69.0
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 8.8e-160 567.4 406 68.0
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 1.5e-159 566.6 406 68.0
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 4.4e-159 565.1 410 69.5
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 5.7e-159 564.7 402 67.7
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 2.2e-158 562.8 396 68.2
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 2.8e-158 562.4 403 67.5
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 2.8e-158 562.4 406 67.2
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 1.4e-157 560.1 407 66.3
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 1.4e-157 560.1 401 67.6
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 2.4e-157 559.3 402 66.7
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 4.1e-157 558.5 401 67.6
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 4.1e-157 558.5 403 67.7
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 5.4e-157 558.1 396 67.4
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 1.6e-156 556.6 400 67.2
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 7.7e-156 554.3 399 68.2
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 1.7e-155 553.1 399 67.9
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 1.7e-155 553.1 396 68.4
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 2.3e-155 552.7 407 66.1
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 6.6e-155 551.2 431 63.3
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 6.6e-155 551.2 396 66.2
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 1.5e-154 550.1 406 67.0
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 2.1e-153 546.2 404 65.8
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 5.7e-151 538.1 402 66.9
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 7.5e-151 537.7 358 70.9
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 9.8e-151 537.3 360 71.4
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 1.3e-150 537.0 399 64.7
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 1.7e-150 536.6 399 64.4
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 4.9e-150 535.0 400 65.5
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 6.4e-150 534.6 486 58.0
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 4.1e-149 531.9 405 63.7
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 9.5e-146 520.8 315 81.6
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 9.5e-146 520.8 409 64.1
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 1.2e-145 520.4 402 64.7
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 4.1e-141 505.4 311 78.5
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 2.0e-140 503.1 406 60.8
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 3.5e-140 502.3 402 60.7
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 3.0e-139 499.2 399 60.7
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 4.7e-137 491.9 350 69.4
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 6.2e-137 491.5 399 59.4
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 1.6e-132 476.9 410 57.3
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 7.3e-130 468.0 402 57.5
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 1.8e-128 463.4 396 58.6
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 1.8e-120 436.8 268 78.0
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 3.9e-107 392.5 267 69.7
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 1.1e-106 391.0 360 56.4
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 2.8e-105 386.3 312 59.9
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 4.6e-100 369.0 267 68.2
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 5.1e-99 365.5 416 44.5
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 1.1e-96 357.8 407 46.7
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.7e-94 350.5 415 52.0
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 7.1e-93 345.1 414 43.7
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 1.8e-91 340.5 411 44.3
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 4.5e-79 299.3 443 39.1
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 5.5e-77 292.4 247 59.5
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 2.1e-68 263.8 161 79.5
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 2.2e-65 253.8 173 72.3
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 5.3e-64 249.2 201 62.7
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 3.5e-63 246.5 163 71.8
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 8.5e-62 241.9 213 56.8
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 4.8e-57 226.1 161 64.0
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 2.5e-53 213.8 135 74.8
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.6e-50 203.8 189 55.6
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 4.4e-50 203.0 341 34.0
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 9.8e-50 201.8 148 62.8
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 4.8e-49 199.5 116 78.4
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 8.0e-36 155.6 93 79.6
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 1.7e-30 137.9 97 67.0
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 1.9e-21 107.8 95 62.1
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 1.2e-18 98.6 70 65.7
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 1.4e-16 91.7 304 28.0
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 6.0e-15 86.3 78 61.5
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.4e-11 75.1 50 70.0


User provided reference genes

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