Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 2.3e-145 518.8 262 100.0
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 1.2e-67 260.8 219 66.2
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 1.8e-65 253.4 283 53.4
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 4.2e-62 242.3 280 56.1
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 6.1e-61 238.4 280 53.9
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 4.1e-57 225.7 300 47.0
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 1.7e-55 220.3 269 53.2
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 6.3e-50 201.8 303 43.6
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 6.3e-50 201.8 303 43.6
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 5.4e-49 198.7 307 42.3
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 1.2e-48 197.6 292 41.8
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 1.6e-48 197.2 293 42.3
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 2.0e-48 196.8 308 43.2
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 2.7e-48 196.4 307 43.6
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 3.5e-48 196.1 304 41.8
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 1.0e-47 194.5 307 41.4
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 1.3e-47 194.1 298 41.6
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 4.3e-46 189.1 307 40.4
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 9.5e-46 188.0 297 39.1
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 1.6e-45 187.2 306 40.8
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 4.7e-45 185.7 290 41.0
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 4.7e-45 185.7 302 42.1
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 6.1e-45 185.3 305 40.0
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 2.3e-44 183.3 295 40.0
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 1.2e-43 181.0 292 42.1
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 2.0e-43 180.3 288 41.7
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 4.4e-43 179.1 294 42.2
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 7.5e-43 178.3 302 39.4
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 1.3e-42 177.6 289 37.0
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 8.3e-42 174.9 288 36.5
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.1e-41 174.5 300 40.0
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 1.1e-41 174.5 297 39.4
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 1.4e-41 174.1 297 39.7
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 2.4e-41 173.3 303 38.6
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 3.2e-41 172.9 307 40.7
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 5.4e-41 172.2 296 40.2
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 1.2e-40 171.0 281 37.4
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 2.0e-40 170.2 298 40.9
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 2.0e-40 170.2 287 37.3
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 3.5e-40 169.5 287 41.1
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 1.3e-39 167.5 288 38.9
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 1.7e-39 167.2 297 34.3
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 6.6e-39 165.2 282 40.1
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 8.6e-39 164.9 312 38.1
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 8.6e-39 164.9 300 36.0
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 1.1e-38 164.5 272 39.7
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 1.1e-38 164.5 280 39.6
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 1.5e-38 164.1 271 39.5
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 2.5e-38 163.3 280 39.3
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 5.6e-38 162.2 321 37.7
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 5.6e-38 162.2 310 38.4
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 7.3e-38 161.8 296 37.8
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 9.5e-38 161.4 240 42.5
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 2.1e-37 160.2 307 36.5
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 2.1e-37 160.2 286 36.7
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.8e-37 159.8 286 39.9
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 2.8e-37 159.8 279 37.3
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 4.7e-37 159.1 277 39.0
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 6.2e-37 158.7 287 37.6
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 6.2e-37 158.7 274 38.7
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.0e-36 156.0 308 36.4
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 8.9e-36 154.8 306 37.6
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 1.2e-35 154.5 273 38.5
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 3.4e-35 152.9 293 37.9
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 3.4e-35 152.9 300 36.7
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 4.4e-35 152.5 270 39.3
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 7.5e-35 151.8 300 36.0
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 4.9e-34 149.1 274 36.5
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.1e-33 147.9 297 36.4
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 1.4e-33 147.5 265 37.0
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 1.9e-33 147.1 316 35.4
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 1.9e-33 147.1 273 37.0
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 1.9e-33 147.1 273 35.5
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.4e-33 146.7 202 45.5
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 3.2e-33 146.4 281 37.4
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 3.5e-32 142.9 297 35.4
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 3.5e-32 142.9 264 35.2
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 7.8e-32 141.7 300 35.7
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 1.0e-31 141.4 289 36.0
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 3.0e-31 139.8 291 36.4
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 3.0e-31 139.8 252 38.1
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 8.6e-31 138.3 241 41.1
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 1.9e-30 137.1 293 34.5
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 9.5e-30 134.8 259 36.7
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 2.8e-29 133.3 295 34.9
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 2.8e-29 133.3 308 35.1
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 1.1e-28 131.3 277 32.9
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 1.4e-28 131.0 259 31.7
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 3.1e-28 129.8 303 35.6
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 5.2e-28 129.0 273 36.6
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 8.9e-28 128.3 308 30.5
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 8.9e-28 128.3 310 33.2
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.2e-27 127.9 287 36.9
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 2.0e-27 127.1 259 34.7
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.0e-27 127.1 266 35.3
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 7.6e-27 125.2 292 30.5
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 1.3e-26 124.4 179 44.1
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 1.7e-26 124.0 282 33.7
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 2.2e-26 123.6 262 36.3
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 2.9e-26 123.2 256 34.8
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 3.7e-26 122.9 262 35.5
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 4.9e-26 122.5 321 33.3
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 1.1e-25 121.3 270 30.7
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 1.9e-25 120.6 290 32.8
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.9e-25 120.6 299 32.8
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 2.4e-25 120.2 281 34.9
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 2.4e-25 120.2 262 35.9
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 3.2e-25 119.8 285 35.1
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 4.1e-25 119.4 288 35.4
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 4.1e-25 119.4 298 34.2
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 7.1e-25 118.6 256 35.5
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 9.2e-25 118.2 271 35.4
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 2.1e-24 117.1 281 33.1
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 3.5e-24 116.3 274 31.4
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 4.6e-24 115.9 274 36.1
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 7.8e-24 115.2 283 33.6
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 7.8e-24 115.2 286 32.2
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 7.8e-24 115.2 306 34.3
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 1.0e-23 114.8 297 33.7
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 1.0e-23 114.8 276 32.2
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 1.3e-23 114.4 295 34.6
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 1.3e-23 114.4 281 33.5
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.3e-23 114.4 292 32.2
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 1.7e-23 114.0 284 37.0
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 3.0e-23 113.2 284 37.0
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 3.0e-23 113.2 284 37.0
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 3.0e-23 113.2 284 37.0
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 6.6e-23 112.1 284 33.1
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 8.6e-23 111.7 279 34.8
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 8.6e-23 111.7 287 35.2
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 1.1e-22 111.3 275 33.8
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 1.1e-22 111.3 269 34.9
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 1.5e-22 110.9 275 32.7
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 1.5e-22 110.9 275 32.7
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 1.9e-22 110.5 285 32.3
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.9e-22 110.5 293 32.1
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 4.3e-22 109.4 290 34.8
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 7.3e-22 108.6 289 33.6
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 7.3e-22 108.6 297 32.7
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 9.6e-22 108.2 280 33.9
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 1.2e-21 107.8 282 35.5
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 1.2e-21 107.8 280 33.6
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 1.2e-21 107.8 289 30.1
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 2.1e-21 107.1 284 34.5
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 2.8e-21 106.7 275 32.4
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 4.7e-21 105.9 281 33.5
Duzib106G0556 Durio zibethinus HOM05D003715 ORTHO05D003958 8.1e-21 105.1 226 37.2
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 8.1e-21 105.1 186 38.2
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 1.4e-20 104.4 287 31.7
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 2.4e-20 103.6 288 31.9
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 2.4e-20 103.6 269 35.3
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 3.1e-20 103.2 282 31.2
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 4.0e-20 102.8 301 30.2
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 4.0e-20 102.8 280 32.9
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 5.2e-20 102.4 292 33.9
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 1.2e-19 101.3 269 33.5
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 1.5e-19 100.9 102 47.1
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 3.4e-19 99.8 286 33.2
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 9.9e-19 98.2 281 31.7
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 2.2e-18 97.1 179 39.1
Peaxi162Scf00249g00717 Petunia axillaris HOM05D003715 ORTHO05D003958 4.9e-18 95.9 189 33.9
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 8.4e-18 95.1 271 31.7
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 1.1e-17 94.7 278 33.1
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 1.1e-17 94.7 306 30.4
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 9.3e-17 91.7 143 40.6
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 2.1e-16 90.5 271 26.2
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 3.9e-15 86.3 278 29.5
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 1.1e-14 84.7 286 33.2
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 4.3e-14 82.8 271 29.5
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 9.6e-14 81.6 279 31.9
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 2.1e-13 80.5 267 28.8
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 3.6e-13 79.7 255 30.6
TAR633G2325 Trochodendron aralioides HOM05D003715 ORTHO05D003958 4.8e-13 79.3 173 35.3
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 4.0e-12 76.3 169 30.2
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 4.0e-12 76.3 133 36.1
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 1.2e-11 74.7 233 30.9
arahy.Tifrunner.gnm1.ann1.85Z4HY Arachis hypogaea HOM05D003715 ORTHO05D003958 6.4e-10 68.9 270 24.4
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 1.4e-09 67.8 275 29.1
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 1.9e-09 67.4 93 43.0
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 4.2e-09 66.2 76 39.5
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 5.4e-09 65.9 95 35.8
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 6.0e-08 62.4 102 38.2


User provided reference genes

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