Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac3g06735 Beta vulgaris HOM05D004141 ORTHO05D026982 5.2e-50 200.7 97 100.0
EL10Ac3g06738 Beta vulgaris HOM05D004141 ORTHO05D026982 4.0e-26 121.3 58 98.3
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 5.3e-26 120.9 57 100.0
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 2.2e-24 115.5 58 89.7
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 2.4e-23 112.1 58 86.2
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 1.6e-22 109.4 64 75.0
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 1.6e-22 109.4 58 87.9
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 2.1e-22 109.0 58 86.2
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 2.1e-22 109.0 57 89.5
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 2.1e-22 109.0 56 87.5
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 3.5e-22 108.2 56 85.7
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 3.5e-22 108.2 58 84.5
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 3.5e-22 108.2 57 86.0
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 3.5e-22 108.2 55 89.1
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 3.5e-22 108.2 55 90.9
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 3.5e-22 108.2 55 90.9
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 3.5e-22 108.2 56 85.7
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 3.5e-22 108.2 57 84.2
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 4.6e-22 107.8 58 84.5
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 4.6e-22 107.8 58 82.8
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 4.6e-22 107.8 57 86.0
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 4.6e-22 107.8 57 86.0
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 4.6e-22 107.8 56 89.3
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 6.0e-22 107.5 58 82.8
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 6.0e-22 107.5 58 81.0
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 7.9e-22 107.1 63 76.2
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 1.0e-21 106.7 58 82.8
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 1.0e-21 106.7 57 82.5
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 1.0e-21 106.7 57 80.7
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 1.0e-21 106.7 58 86.2
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 1.0e-21 106.7 59 78.0
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 1.3e-21 106.3 56 85.7
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 1.3e-21 106.3 57 84.2
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 1.3e-21 106.3 63 76.2
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.3e-21 106.3 65 78.5
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 1.3e-21 106.3 65 76.9
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 1.8e-21 105.9 58 79.3
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 1.8e-21 105.9 55 87.3
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 1.8e-21 105.9 57 84.2
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 1.8e-21 105.9 57 80.7
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 2.3e-21 105.5 58 79.3
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 2.3e-21 105.5 58 79.3
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 2.3e-21 105.5 57 80.7
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 3.0e-21 105.1 57 80.7
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 3.0e-21 105.1 57 80.7
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 3.0e-21 105.1 57 80.7
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 3.0e-21 105.1 57 80.7
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 3.0e-21 105.1 56 83.9
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 3.0e-21 105.1 57 80.7
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 3.0e-21 105.1 57 84.2
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 3.0e-21 105.1 57 84.2
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 3.0e-21 105.1 57 84.2
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 3.0e-21 105.1 58 84.5
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 3.0e-21 105.1 57 80.7
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 3.0e-21 105.1 63 76.2
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 3.9e-21 104.8 57 80.7
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 3.9e-21 104.8 57 82.5
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 3.9e-21 104.8 57 78.9
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 3.9e-21 104.8 62 77.4
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 3.9e-21 104.8 58 81.0
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 3.9e-21 104.8 58 81.0
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 5.1e-21 104.4 63 74.6
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 5.1e-21 104.4 57 80.7
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 6.7e-21 104.0 65 75.4
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 6.7e-21 104.0 57 80.7
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 6.7e-21 104.0 56 83.9
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 6.7e-21 104.0 64 71.9
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 8.7e-21 103.6 57 80.7
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 8.7e-21 103.6 68 67.6
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 1.1e-20 103.2 57 80.7
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 1.1e-20 103.2 56 82.1
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 1.1e-20 103.2 62 75.8
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 1.1e-20 103.2 56 82.1
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 1.1e-20 103.2 57 82.5
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 1.1e-20 103.2 54 83.3
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 1.1e-20 103.2 57 80.7
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 1.5e-20 102.8 56 82.1
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 1.5e-20 102.8 56 82.1
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 1.5e-20 102.8 55 81.8
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 1.9e-20 102.4 57 78.9
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 1.9e-20 102.4 55 83.6
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 1.9e-20 102.4 62 75.8
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 1.9e-20 102.4 57 80.7
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 1.9e-20 102.4 57 80.7
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 2.5e-20 102.1 57 78.9
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 2.5e-20 102.1 54 83.3
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 2.5e-20 102.1 57 80.7
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 2.5e-20 102.1 58 75.9
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 2.5e-20 102.1 56 82.1
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 3.3e-20 101.7 57 77.2
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 3.3e-20 101.7 57 80.7
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 4.3e-20 101.3 57 78.9
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 4.3e-20 101.3 57 78.9
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 4.3e-20 101.3 55 81.8
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 4.3e-20 101.3 57 78.9
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 4.3e-20 101.3 57 78.9
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 4.3e-20 101.3 57 78.9
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 4.3e-20 101.3 56 83.9
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 4.3e-20 101.3 60 78.3
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 4.3e-20 101.3 61 72.1
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 5.6e-20 100.9 56 80.4
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 5.6e-20 100.9 63 73.0
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 5.6e-20 100.9 63 73.0
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 7.4e-20 100.5 65 72.3
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 7.4e-20 100.5 57 80.7
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 7.4e-20 100.5 57 78.9
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 9.6e-20 100.1 56 78.6
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 1.6e-19 99.4 57 80.7
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 1.6e-19 99.4 55 81.8
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 2.8e-19 98.6 60 75.0
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 3.7e-19 98.2 54 79.6
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 8.2e-19 97.1 57 75.4
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 1.1e-18 96.7 66 66.7
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 2.0e-17 92.4 55 74.5
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 2.6e-17 92.0 65 69.2
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 3.4e-17 91.7 53 77.4
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 4.5e-17 91.3 55 72.7
BraA02t07239Z Brassica rapa HOM05D004141 ORTHO05D026982 5.8e-17 90.9 57 71.9
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 5.8e-17 90.9 77 61.0
A02p22350 Brassica napus HOM05D004141 ORTHO05D026982 1.7e-16 89.4 57 71.9
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 3.8e-16 88.2 53 73.6
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 1.9e-15 85.9 42 90.5
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 2.5e-15 85.5 59 69.5
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 6.0e-14 80.9 99 44.4
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.0e-13 80.1 55 69.1
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 3.9e-13 78.2 42 83.3
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 6.7e-13 77.4 60 58.3
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 2.5e-12 75.5 41 80.5
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.5e-12 75.5 56 60.7
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 5.7e-12 74.3 53 62.3
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 7.4e-12 73.9 56 60.7
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 7.4e-12 73.9 63 52.4
Cfa025499 Carpinus fangiana HOM05D004141 ORTHO05D005416 1.4e-10 69.7 69 47.8
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 1.8e-10 69.3 39 74.4
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 3.8e-08 61.6 39 69.2
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 6.1e-06 54.3 38 68.4


User provided reference genes

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