Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 1.1e-143 513.5 298 100.0
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 7.5e-31 138.7 263 43.3
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 7.5e-31 138.7 300 42.3
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 9.8e-31 138.3 248 40.7
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 6.4e-30 135.6 191 40.8
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 1.8e-29 134.0 191 40.3
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 5.4e-29 132.5 200 43.0
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 1.6e-28 131.0 300 41.0
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 4.6e-28 129.4 191 39.3
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 5.9e-28 129.0 300 33.0
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 5.9e-28 129.0 194 42.8
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 7.8e-28 128.6 295 34.6
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 1.0e-27 128.3 300 40.0
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 1.3e-27 127.9 209 40.2
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 2.3e-27 127.1 210 44.8
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 5.0e-27 125.9 198 48.0
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 5.0e-27 125.9 195 41.5
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 8.6e-27 125.2 256 36.7
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 8.6e-27 125.2 310 32.9
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 1.1e-26 124.8 199 41.2
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 1.9e-26 124.0 199 41.2
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 1.9e-26 124.0 208 41.8
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 3.3e-26 123.2 296 33.1
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 2.1e-25 120.6 283 31.1
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 6.2e-25 119.0 193 39.9
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 6.2e-25 119.0 167 42.5
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 1.4e-24 117.9 213 39.9
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.4e-24 117.9 208 39.4
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.4e-24 117.9 208 39.4
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 1.4e-24 117.9 183 39.9
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 1.8e-24 117.5 210 41.4
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 4.0e-24 116.3 271 31.7
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 4.0e-24 116.3 193 39.4
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 5.2e-24 115.9 208 33.7
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 6.8e-24 115.5 205 39.5
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 6.8e-24 115.5 196 46.9
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 8.9e-24 115.2 193 38.3
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 8.9e-24 115.2 204 36.3
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.2e-23 114.8 240 34.6
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 2.0e-23 114.0 213 41.8
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 2.0e-23 114.0 280 36.1
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 2.6e-23 113.6 302 35.4
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 4.4e-23 112.8 199 39.7
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 1.7e-22 110.9 196 37.8
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 2.2e-22 110.5 206 37.4
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 3.7e-22 109.8 214 36.0
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 4.9e-22 109.4 208 37.0
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 6.4e-22 109.0 203 39.4
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 8.3e-22 108.6 306 29.7
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 8.3e-22 108.6 184 41.8
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 1.1e-21 108.2 208 36.5
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.4e-21 107.8 218 34.4
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 1.9e-21 107.5 194 36.1
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 4.1e-21 106.3 192 40.6
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 4.1e-21 106.3 257 32.3
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.6e-20 104.4 205 37.6
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 2.0e-20 104.0 249 34.5
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 3.5e-20 103.2 207 42.5
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 4.6e-20 102.8 290 34.8
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 6.0e-20 102.4 217 35.0
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.3e-19 101.3 217 33.6
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 1.7e-19 100.9 191 36.6
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 3.0e-19 100.1 185 32.4
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 3.0e-19 100.1 190 44.7
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 5.0e-19 99.4 260 31.2
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 5.0e-19 99.4 197 35.0
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 1.1e-18 98.2 200 33.0
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 2.5e-18 97.1 295 29.5
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 2.5e-18 97.1 202 34.2
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 3.3e-18 96.7 204 34.8
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 1.2e-17 94.7 182 34.6
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.6e-17 94.4 204 31.9
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.6e-17 94.4 185 34.6
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.6e-17 94.4 185 34.6
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 1.6e-17 94.4 201 33.8
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 2.8e-17 93.6 193 35.2
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 2.8e-17 93.6 277 39.4
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 3.6e-17 93.2 205 33.2
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 6.2e-17 92.4 183 35.5
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 8.1e-17 92.0 201 31.8
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 1.4e-16 91.3 195 31.8
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 2.3e-16 90.5 196 34.7
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 3.1e-16 90.1 198 34.8
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 4.0e-16 89.7 283 29.3
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 4.0e-16 89.7 188 36.2
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 5.2e-16 89.4 187 35.3
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 8.9e-16 88.6 203 31.0
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 8.9e-16 88.6 183 33.9
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 1.2e-15 88.2 313 30.4
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 2.6e-15 87.0 201 35.3
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 2.6e-15 87.0 306 28.8
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 2.6e-15 87.0 282 30.5
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 4.4e-15 86.3 197 36.5
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 5.8e-15 85.9 283 29.0
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 5.8e-15 85.9 255 34.5
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 7.5e-15 85.5 292 26.7
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 1.7e-14 84.3 181 33.1
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.7e-14 84.3 241 27.4
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.2e-14 84.0 180 34.4
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 2.9e-14 83.6 186 33.9
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 4.9e-14 82.8 287 28.9
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 4.9e-14 82.8 170 35.9
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 1.1e-13 81.6 195 40.0
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 1.9e-13 80.9 182 32.4
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 1.9e-13 80.9 205 32.7
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 2.4e-13 80.5 283 29.7
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 2.4e-13 80.5 198 31.3
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 3.2e-13 80.1 199 32.7
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 3.2e-13 80.1 243 28.8
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 5.4e-13 79.3 184 31.0
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 5.4e-13 79.3 178 32.0
A04p25560 Brassica napus HOM05D004244 ORTHO05D004964 9.2e-13 78.6 296 28.0
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 2.7e-12 77.0 235 29.8
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 3.5e-12 76.6 182 35.2
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 4.6e-12 76.3 159 38.4
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 1.3e-11 74.7 248 30.2
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 1.7e-11 74.3 181 31.5
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 1.7e-11 74.3 142 38.7
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 3.9e-11 73.2 186 31.2
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 8.6e-11 72.0 156 34.6
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 8.6e-11 72.0 156 33.3
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 1.1e-10 71.6 255 32.5
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 1.1e-10 71.6 182 30.8
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 1.1e-10 71.6 175 41.1
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 1.9e-10 70.9 186 33.9
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 2.5e-10 70.5 198 34.8
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 9.5e-10 68.6 181 29.8
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 1.6e-09 67.8 186 29.6
unitig_26.g9547 Utricularia gibba HOM05D004244 ORTHO05D004964 1.6e-09 67.8 205 29.8
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 2.1e-09 67.4 252 32.1
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 2.8e-09 67.0 182 30.2
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 6.2e-09 65.9 264 31.8
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 6.2e-09 65.9 255 32.5
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 6.2e-09 65.9 255 32.5
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 1.1e-08 65.1 185 28.6
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 1.1e-08 65.1 177 32.8
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 3.1e-08 63.5 137 29.9
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 4.0e-08 63.2 137 39.4
Medtr4g088590 Medicago truncatula HOM05D004244 ORTHO05D004964 4.0e-08 63.2 76 52.6
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 8.9e-08 62.0 185 27.6
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 8.9e-08 62.0 245 31.8
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 3.4e-07 60.1 174 31.6
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 7.6e-07 58.9 183 28.4
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 1.7e-06 57.8 195 28.2
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 2.2e-06 57.4 211 25.1
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 3.8e-06 56.6 94 39.4
Zm00001eb360230 Zea mays HOM05D004244 ORTHO05D004964 4.9e-06 56.2 251 33.1


User provided reference genes

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