Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 0.0e+00 1231.5 621 100.0
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 4.4e-259 897.9 596 78.0
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.4e-257 892.9 596 77.5
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 1.4e-252 876.3 605 75.2
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 8.9e-236 820.5 596 71.5
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 5.8e-235 817.8 667 65.7
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 1.1e-225 786.9 596 68.8
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 4.2e-225 785.0 596 68.6
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 6.0e-224 781.2 611 66.4
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 6.6e-223 777.7 596 67.1
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 6.6e-223 777.7 596 66.8
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 1.1e-222 776.9 596 67.8
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 4.3e-222 775.0 612 66.8
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 5.6e-222 774.6 596 66.8
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 3.6e-221 771.9 597 66.5
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 1.1e-220 770.4 597 68.0
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 9.0e-220 767.3 596 66.3
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 9.0e-220 767.3 601 66.6
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 1.2e-219 766.9 597 66.0
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 4.5e-219 765.0 598 66.2
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 5.8e-219 764.6 620 64.5
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 7.6e-219 764.2 602 65.4
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 1.3e-218 763.5 615 65.0
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 2.2e-218 762.7 596 65.4
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 2.2e-218 762.7 601 66.1
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 7.1e-217 757.7 601 65.9
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 3.5e-216 755.4 601 64.7
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 4.6e-216 755.0 597 65.7
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 6.0e-216 754.6 608 64.6
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 7.9e-216 754.2 593 65.8
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 2.3e-215 752.7 596 64.3
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 3.9e-215 751.9 596 64.4
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 6.7e-215 751.1 644 62.1
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 8.7e-215 750.7 596 64.9
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 1.1e-214 750.4 570 67.7
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 2.5e-214 749.2 597 65.3
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 3.3e-214 748.8 596 65.3
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 4.3e-214 748.4 641 61.9
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 4.3e-214 748.4 598 65.2
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 1.3e-213 746.9 602 64.0
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 3.7e-213 745.3 603 64.5
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 2.4e-212 742.7 596 65.8
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 2.4e-212 742.7 623 63.2
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 3.1e-212 742.3 611 63.7
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 5.3e-212 741.5 625 62.6
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 6.9e-212 741.1 594 65.7
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 9.0e-212 740.7 620 62.1
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 9.0e-212 740.7 606 62.9
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 1.2e-211 740.3 596 64.9
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 9.9e-211 737.3 623 61.2
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 9.9e-211 737.3 596 64.3
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 4.9e-210 734.9 562 67.6
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 8.4e-210 734.2 600 65.0
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 1.4e-209 733.4 595 64.0
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 3.2e-209 732.3 597 65.2
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 1.2e-208 730.3 596 64.6
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 1.2e-208 730.3 642 61.1
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 3.5e-208 728.8 594 64.8
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 1.0e-207 727.2 578 65.7
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 1.0e-207 727.2 601 64.2
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 1.0e-207 727.2 599 64.6
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 2.3e-207 726.1 601 64.4
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 8.7e-207 724.2 600 63.0
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 3.3e-206 722.2 601 64.4
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 1.3e-205 720.3 537 67.2
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 5.3e-204 714.9 596 63.8
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 1.5e-203 713.4 549 66.1
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 3.4e-203 712.2 601 63.2
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 7.6e-203 711.1 603 63.2
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 1.0e-202 710.7 601 62.7
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 2.2e-202 709.5 595 62.7
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 3.8e-202 708.8 609 62.6
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 1.9e-201 706.4 598 61.0
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 7.1e-201 704.5 602 62.5
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 3.5e-200 702.2 608 61.8
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 1.8e-199 699.9 572 64.5
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 1.5e-198 696.8 569 62.7
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 1.6e-197 693.3 570 65.4
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 6.9e-196 688.0 501 69.1
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 7.2e-193 677.9 529 65.8
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 3.9e-191 672.2 573 62.3
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 3.3e-190 669.1 615 59.0
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 9.7e-190 667.5 580 61.2
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 9.7e-190 667.5 577 61.5
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 4.8e-189 665.2 599 60.1
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 3.1e-188 662.5 542 64.9
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 4.2e-185 652.1 511 64.0
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 3.3e-182 642.5 537 63.9
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 5.7e-182 641.7 530 61.5
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 5.3e-180 635.2 539 62.2
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 2.0e-179 633.3 489 65.6
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 6.5e-178 628.2 567 57.1
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 2.3e-175 619.8 528 58.7
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 6.7e-175 618.2 486 64.6
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.2e-171 607.4 508 63.4
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 7.2e-169 598.2 517 59.2
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 4.0e-167 592.4 619 53.8
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 6.3e-165 585.1 532 56.8
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 2.7e-163 579.7 531 54.4
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 1.7e-162 577.0 478 60.5
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 3.1e-156 556.2 469 61.8
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 3.0e-151 539.7 554 55.8
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 3.6e-144 516.2 597 51.1
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 1.7e-141 507.3 501 56.5
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 6.2e-136 488.8 532 48.7
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 8.0e-136 488.4 386 67.6
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 8.9e-135 485.0 536 50.0
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 2.3e-130 470.3 418 61.5
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 3.1e-119 433.3 368 62.8
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 1.2e-115 421.4 368 62.5
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 3.0e-114 416.8 532 41.5
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 4.8e-112 409.5 317 69.1
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 4.4e-110 402.9 466 48.7
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 1.4e-100 371.3 315 63.5
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 5.3e-95 352.8 259 69.9
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.4e-92 344.7 421 48.5
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 2.6e-86 323.9 274 62.8
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 9.7e-81 305.4 210 69.0
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 6.5e-77 292.7 210 65.7
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 1.9e-76 291.2 210 66.7
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 4.3e-73 280.0 199 69.8
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 5.7e-73 279.6 199 69.3
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.7e-72 278.1 211 63.5
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 5.3e-63 246.5 505 32.5
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 4.7e-59 233.4 134 76.1
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 3.1e-55 220.7 139 78.4
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 4.7e-51 206.8 268 45.5
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 2.2e-48 198.0 187 55.6
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 9.4e-44 182.6 478 29.1
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 2.7e-38 164.5 102 73.5
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 2.7e-38 164.5 102 73.5
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 2.0e-33 148.3 146 54.1
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 5.4e-31 140.2 177 45.2
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 6.6e-29 133.3 130 56.2
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 2.6e-25 121.3 393 27.7
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 4.4e-25 120.6 84 69.0
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 1.9e-23 115.2 147 47.6
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 3.2e-23 114.4 66 83.3
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 7.0e-23 113.2 68 83.8
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 7.3e-20 103.2 66 74.2
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 1.6e-19 102.1 88 58.0
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 1.1e-18 99.4 137 43.1
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 5.2e-18 97.1 53 88.7
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 8.9e-18 96.3 57 80.7
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 1.5e-17 95.5 120 46.7
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 5.8e-17 93.6 119 43.7
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 7.1e-15 86.7 102 51.0
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.0e-13 81.3 65 70.8
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 4.7e-11 73.9 88 50.0
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 1.4e-10 72.4 61 60.7
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 1.2e-09 69.3 46 71.7
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 2.4e-07 61.6 48 54.2
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 3.5e-06 57.8 45 64.4
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 3.5e-06 57.8 72 45.8
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 6.0e-06 57.0 43 60.5


User provided reference genes

Program Settings