Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 2.6e-150 535.8 292 100.0
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 9.6e-73 278.1 299 62.2
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 7.1e-60 235.3 313 53.7
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 1.5e-54 217.6 303 52.8
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.7e-45 187.6 292 51.0
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 5.0e-45 186.0 319 47.6
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 9.4e-44 181.8 311 45.7
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 1.2e-43 181.4 315 45.4
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.6e-43 181.0 327 41.0
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 1.6e-43 181.0 323 45.8
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 3.0e-42 176.8 309 45.0
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 5.1e-42 176.0 320 45.9
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 6.7e-42 175.6 326 46.6
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 1.1e-41 174.9 325 46.8
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 9.7e-41 171.8 317 46.7
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 4.1e-39 166.4 324 43.2
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 5.3e-39 166.0 317 44.5
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 1.2e-38 164.9 317 43.8
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 5.9e-38 162.5 312 45.2
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 7.7e-38 162.2 322 43.2
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 1.0e-37 161.8 320 42.8
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 1.3e-37 161.4 325 44.6
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 1.3e-37 161.4 320 44.7
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 8.5e-37 158.7 330 42.4
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 1.4e-36 157.9 324 43.2
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 3.2e-36 156.8 314 43.6
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 3.2e-36 156.8 326 42.9
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 1.2e-35 154.8 327 43.7
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 3.6e-35 153.3 332 40.7
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 3.6e-35 153.3 330 40.9
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 6.1e-35 152.5 318 41.8
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 6.1e-35 152.5 313 42.8
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.0e-34 151.8 332 42.5
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 1.0e-34 151.8 319 43.9
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 2.3e-34 150.6 317 42.6
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 6.7e-34 149.1 351 40.7
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 3.3e-33 146.7 328 41.5
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 3.3e-33 146.7 268 43.7
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 3.3e-33 146.7 250 46.0
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 5.7e-33 146.0 324 43.5
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.3e-32 144.8 337 39.5
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 1.7e-32 144.4 321 43.3
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 3.7e-32 143.3 311 34.4
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 8.2e-32 142.1 310 41.6
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 1.4e-31 141.4 332 39.8
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 1.8e-31 141.0 319 42.3
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 5.3e-31 139.4 306 41.8
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 7.0e-31 139.0 311 39.5
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 1.2e-30 138.3 314 41.1
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 1.2e-30 138.3 314 40.8
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 2.0e-30 137.5 189 42.3
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 1.0e-29 135.2 322 39.8
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 1.3e-29 134.8 322 39.8
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 1.3e-29 134.8 332 38.6
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 2.2e-29 134.0 326 40.5
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 5.0e-29 132.9 222 41.0
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 6.5e-29 132.5 310 40.0
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 6.5e-29 132.5 347 38.6
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 8.5e-29 132.1 332 33.1
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 2.5e-28 130.6 227 48.0
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 3.2e-28 130.2 311 39.2
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 4.2e-28 129.8 312 40.4
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 4.2e-28 129.8 306 39.9
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 7.2e-28 129.0 174 47.1
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 1.6e-27 127.9 326 41.4
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 3.6e-27 126.7 319 40.1
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 3.0e-26 123.6 318 38.1
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 4.0e-26 123.2 315 41.0
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 6.7e-26 122.5 333 38.1
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 8.8e-26 122.1 302 32.5
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 2.0e-25 120.9 307 35.5
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 2.6e-25 120.6 323 38.4
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 4.4e-25 119.8 342 36.3
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 5.7e-25 119.4 309 39.5
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 8.2e-24 115.5 317 34.4
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 1.1e-23 115.2 210 37.6
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 1.8e-23 114.4 208 46.6
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 4.1e-23 113.2 302 36.8
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 5.3e-23 112.8 195 38.5
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 9.1e-23 112.1 308 31.2
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 9.1e-23 112.1 314 29.6
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 9.1e-23 112.1 319 31.3
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.2e-22 111.7 317 36.9
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 1.6e-22 111.3 308 31.2
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 1.6e-22 111.3 171 39.2
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 2.7e-22 110.5 307 31.3
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 3.5e-22 110.2 312 30.8
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 3.5e-22 110.2 185 40.0
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 5.9e-22 109.4 196 35.7
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 1.0e-21 108.6 309 30.1
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 2.2e-21 107.5 320 32.5
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 6.5e-21 105.9 322 37.0
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 6.5e-21 105.9 193 36.8
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 8.5e-21 105.5 295 39.3
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 1.1e-20 105.1 168 41.7
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 1.6e-19 101.3 79 60.8
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 3.6e-19 100.1 302 29.8
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 3.6e-19 100.1 317 39.1
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 2.3e-18 97.4 319 30.4
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 6.8e-18 95.9 252 35.7
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.7e-16 91.3 69 58.0
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 2.7e-14 84.0 196 34.7
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 1.3e-13 81.6 176 33.5
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 1.3e-13 81.6 296 36.1
BolC8t52749H Brassica oleracea HOM05D006910 ORTHO05D008937 1.5e-12 78.2 148 35.8
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 1.9e-12 77.8 69 52.2
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 1.9e-12 77.8 148 35.1
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 4.2e-12 76.6 134 32.8
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 4.7e-11 73.2 79 50.6
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 8.0e-11 72.4 184 31.5
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 8.0e-11 72.4 172 33.7
Nitab4.5_0008073g0040 Nicotiana tabacum HOM05D009844 ORTHO05D007252 3.4e-09 67.0 46 65.2
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 4.4e-09 66.6 74 44.6
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 4.4e-09 66.6 71 46.5
Os04g0496700 Oryza sativa ssp. japonica HOM05D001903 ORTHO05D001847 1.3e-08 65.1 69 47.8
Aa31LG2G18260 Aethionema arabicum HOM05D001903 ORTHO05D001847 2.2e-08 64.3 75 46.7
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 3.7e-08 63.5 88 43.2
PGR044G1481 Punica granatum HOM05D001903 ORTHO05D001847 8.3e-08 62.4 78 41.0
CSS0007043 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.1e-07 62.0 44 59.1
Duzib150G1231 Durio zibethinus HOM05D001903 ORTHO05D001847 1.1e-07 62.0 80 38.8
Rhsim03G0248500 Rhododendron simsii HOM05D001903 ORTHO05D001847 1.1e-07 62.0 74 43.2
PGR044G1754 Punica granatum HOM05D001903 ORTHO05D001847 1.8e-07 61.2 78 39.7
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 3.1e-07 60.5 78 44.9
AL2G41400 Arabidopsis lyrata HOM05D001903 ORTHO05D001847 4.1e-07 60.1 74 40.5
Actinidia11375 Actinidia chinensis HOM05D006910 ORTHO05D008937 5.4e-07 59.7 45 64.4
SMO118G0200 Selaginella moellendorffii HOM05D006910 ORTHO05D008937 5.4e-07 59.7 59 50.8
AT1G80130 Arabidopsis thaliana HOM05D001903 ORTHO05D001847 9.2e-07 58.9 104 31.7
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 9.2e-07 58.9 86 37.2
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 9.2e-07 58.9 37 70.3
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 9.2e-07 58.9 37 70.3
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 9.2e-07 58.9 88 37.5
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 2.0e-06 57.8 37 67.6
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 2.7e-06 57.4 79 44.3
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 2.7e-06 57.4 37 67.6
Eucgr.C02775 Eucalyptus grandis HOM05D001903 ORTHO05D001847 3.5e-06 57.0 85 38.8
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 3.5e-06 57.0 49 53.1
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 4.5e-06 56.6 101 36.6
BcaB05g25297 Brassica carinata HOM05D001903 ORTHO05D001847 4.5e-06 56.6 72 41.7
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 4.5e-06 56.6 65 44.6
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 4.5e-06 56.6 46 54.3
SEGI_24294 Sequoiadendron giganteum HOM05D006910 ORTHO05D008937 4.5e-06 56.6 44 59.1
Aa31LG4G420 Aethionema arabicum HOM05D001903 ORTHO05D001847 5.9e-06 56.2 123 33.3
Potri.006G254300 Populus trichocarpa HOM05D001903 ORTHO05D001847 5.9e-06 56.2 73 39.7
COL.COLO4_10568 Corchorus olitorius HOM05D007706 ORTHO05D009593 7.8e-06 55.8 70 41.4


User provided reference genes

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