Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 1.1e-161 573.2 273 100.0
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 3.1e-140 501.9 269 87.7
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 2.7e-136 488.8 268 87.3
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 8.2e-133 477.2 251 88.8
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 3.4e-131 471.9 268 84.0
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 2.8e-125 452.2 268 80.2
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 2.0e-123 446.0 268 78.0
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 1.7e-122 443.0 269 78.4
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 6.5e-122 441.0 269 78.4
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 1.4e-121 439.9 268 79.1
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 3.2e-121 438.7 269 76.6
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 4.2e-121 438.3 285 74.0
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 9.4e-121 437.2 268 77.2
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 9.4e-121 437.2 268 75.7
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 1.2e-120 436.8 269 76.6
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 1.6e-120 436.4 269 77.0
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 1.6e-120 436.4 268 77.2
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 2.1e-120 436.0 269 77.3
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 2.1e-120 436.0 268 77.2
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 1.0e-119 433.7 269 75.1
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 1.0e-119 433.7 269 76.6
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 2.3e-119 432.6 269 77.0
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 2.3e-119 432.6 269 75.8
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 3.0e-119 432.2 270 77.4
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 6.7e-119 431.0 269 77.3
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 1.1e-118 430.3 269 76.6
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 1.5e-118 429.9 268 76.1
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 2.0e-118 429.5 269 76.6
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 3.3e-118 428.7 268 72.4
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 3.3e-118 428.7 269 76.6
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 4.3e-118 428.3 268 76.5
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 4.3e-118 428.3 268 75.7
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 5.7e-118 427.9 269 75.8
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 5.7e-118 427.9 269 75.8
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 9.7e-118 427.2 268 75.7
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 9.7e-118 427.2 269 76.2
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 9.7e-118 427.2 268 75.4
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 1.3e-117 426.8 269 74.7
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 1.3e-117 426.8 268 74.3
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 1.3e-117 426.8 268 75.7
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 1.7e-117 426.4 269 75.5
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 1.7e-117 426.4 265 75.5
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 2.2e-117 426.0 268 73.1
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 2.2e-117 426.0 269 75.8
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.8e-117 425.6 269 75.5
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 2.8e-117 425.6 268 72.4
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.7e-117 425.2 269 75.5
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 3.7e-117 425.2 265 76.2
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 4.8e-117 424.9 268 76.1
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 6.3e-117 424.5 265 75.8
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 8.2e-117 424.1 268 73.1
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 1.1e-116 423.7 265 76.2
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 2.4e-116 422.5 268 73.1
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 2.4e-116 422.5 268 75.7
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 3.1e-116 422.2 265 76.6
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 4.1e-116 421.8 268 73.5
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 4.1e-116 421.8 268 73.5
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 5.3e-116 421.4 269 74.3
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 6.9e-116 421.0 268 72.8
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 6.9e-116 421.0 268 72.8
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 9.1e-116 420.6 265 74.7
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 1.2e-115 420.2 269 72.5
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 1.2e-115 420.2 269 75.8
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 1.5e-115 419.9 276 71.0
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 1.5e-115 419.9 269 72.5
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 1.5e-115 419.9 268 72.8
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 1.5e-115 419.9 269 74.7
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 2.0e-115 419.5 269 74.3
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 2.0e-115 419.5 269 74.7
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 5.9e-115 417.9 263 74.9
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 7.7e-115 417.5 268 74.3
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 7.7e-115 417.5 265 75.5
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 1.0e-114 417.2 265 75.1
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 2.2e-114 416.0 269 74.3
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 2.2e-114 416.0 265 74.0
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 6.5e-114 414.5 268 72.0
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 1.1e-113 413.7 269 74.7
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 1.4e-113 413.3 268 73.5
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 7.2e-113 411.0 293 67.9
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 2.7e-112 409.1 268 73.5
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 3.6e-112 408.7 268 71.3
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 6.1e-112 407.9 273 72.9
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 1.0e-111 407.1 269 73.6
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 1.0e-111 407.1 269 73.6
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 5.1e-111 404.8 268 70.5
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 5.1e-111 404.8 269 71.0
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 2.6e-110 402.5 269 73.2
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 5.7e-110 401.4 265 70.2
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 7.0e-108 394.4 263 73.0
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 7.0e-108 394.4 263 73.0
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 1.2e-107 393.7 269 69.9
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 2.0e-107 392.9 299 64.9
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 3.5e-107 392.1 264 68.2
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 4.5e-107 391.7 265 70.6
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 1.7e-106 389.8 235 78.3
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 2.5e-105 386.0 265 69.4
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 2.1e-104 382.9 247 70.9
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 2.1e-104 382.9 247 70.4
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 3.6e-104 382.1 283 66.8
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 1.5e-102 376.7 238 75.6
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 9.7e-102 374.0 256 67.2
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 1.1e-100 370.5 250 70.0
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 1.7e-98 363.2 245 71.0
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 2.3e-95 352.8 247 66.8
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 1.5e-89 333.6 189 80.4
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 5.5e-89 331.6 261 57.1
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 4.7e-88 328.6 265 58.5
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 2.2e-85 319.7 266 57.5
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 7.0e-84 314.7 410 45.4
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 7.0e-84 314.7 410 45.4
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 5.9e-83 311.6 253 62.5
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 7.5e-78 294.7 166 80.1
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 9.8e-78 294.3 167 79.6
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 4.9e-77 292.0 166 79.5
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 7.0e-76 288.1 250 56.0
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 2.0e-70 270.0 266 48.5
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 5.8e-70 268.5 166 70.5
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 2.0e-67 260.0 131 87.8
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 9.5e-65 251.1 156 75.0
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 2.8e-64 249.6 294 46.3
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 7.1e-60 235.0 282 45.7
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 3.5e-59 232.6 273 44.7
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 9.5e-57 224.6 248 49.2
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.9e-52 210.3 140 65.0
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.5e-49 199.9 135 72.6
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 9.6e-49 198.0 247 46.2
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 2.6e-46 189.9 142 65.5
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 1.7e-45 187.2 98 86.7
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 4.3e-41 172.6 213 42.7
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 5.8e-30 135.6 75 78.7
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 1.2e-27 127.9 70 78.6
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 6.0e-27 125.6 70 75.7
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 6.0e-27 125.6 70 75.7
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 5.1e-26 122.5 98 57.1
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 7.6e-22 108.6 75 69.3
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.7e-21 107.5 89 60.7
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 4.2e-20 102.8 80 62.5
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 3.5e-19 99.8 91 56.0
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 3.7e-16 89.7 52 78.8
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 4.5e-14 82.8 85 51.8
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 1.3e-13 81.3 80 52.5
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 6.7e-10 68.9 169 30.2
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 8.2e-08 62.0 56 60.7
FAN21G0384 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.1e-07 60.1 83 47.0
MCO11G144 Micromonas commoda HOM05D019566 ORTHO05D017343 1.2e-06 58.2 125 32.0
unitig_699.g19475 Utricularia gibba HOM05D005341 ORTHO05D416497 2.6e-06 57.0 50 60.0


User provided reference genes

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