Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 0.0e+00 1442.6 733 100.0
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 0.0e+00 1076.6 734 76.3
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.9e-306 1055.4 739 75.5
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 2.9e-286 988.4 735 69.4
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 8.2e-281 970.3 735 68.3
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 7.0e-280 967.2 733 68.1
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.5e-279 964.5 734 67.7
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 5.0e-278 961.1 728 69.1
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.0e-275 953.4 739 66.4
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 2.3e-275 952.2 691 70.9
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 2.6e-274 948.7 736 66.2
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 3.4e-274 948.3 708 68.6
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 7.5e-274 947.2 740 66.9
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 7.5e-274 947.2 743 66.1
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 2.8e-273 945.3 734 66.1
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.1e-272 943.3 761 65.7
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 3.1e-272 941.8 741 66.7
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 4.1e-272 941.4 736 66.7
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 4.1e-272 941.4 740 66.5
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 5.4e-272 941.0 743 66.6
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 4.5e-271 937.9 740 66.2
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 3.8e-270 934.9 742 65.6
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.6e-268 929.5 734 66.1
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 2.1e-268 929.1 813 61.3
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 2.1e-268 929.1 736 66.2
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 4.7e-268 927.9 737 66.4
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 6.1e-268 927.5 756 64.8
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 6.1e-268 927.5 732 66.9
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 8.8e-267 923.7 716 65.9
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 5.7e-266 921.0 735 64.4
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 5.7e-266 921.0 736 64.1
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.7e-265 919.5 742 64.6
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 2.8e-265 918.7 741 66.7
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 2.8e-265 918.7 738 64.8
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 1.8e-264 916.0 737 64.0
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 1.6e-263 912.9 732 64.6
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 2.0e-263 912.5 716 65.5
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 2.0e-263 912.5 733 64.7
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 4.5e-263 911.4 725 66.2
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 5.9e-263 911.0 707 65.8
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 2.9e-262 908.7 737 66.1
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 3.8e-262 908.3 707 66.5
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 5.0e-262 907.9 691 68.6
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 8.6e-262 907.1 716 65.1
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 1.1e-261 906.7 715 66.7
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 2.5e-261 905.6 729 63.9
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 4.3e-261 904.8 732 64.8
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 7.3e-261 904.0 740 63.9
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 1.6e-260 902.9 766 62.3
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 8.0e-260 900.6 734 64.2
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 1.0e-259 900.2 718 64.6
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 1.4e-259 899.8 733 62.9
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 1.2e-258 896.7 712 65.3
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 2.0e-258 896.0 739 63.5
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 2.0e-258 896.0 734 63.2
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 4.4e-258 894.8 738 62.3
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 5.7e-258 894.4 734 63.4
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 1.4e-256 889.8 747 61.7
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 1.8e-256 889.4 709 64.7
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 2.4e-256 889.0 714 65.0
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 4.1e-256 888.3 739 62.7
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 5.4e-256 887.9 735 63.8
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 1.6e-255 886.3 734 62.9
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 2.7e-255 885.6 710 63.5
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 3.9e-254 881.7 734 62.9
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 2.5e-253 879.0 740 61.6
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 7.3e-253 877.5 734 62.0
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 2.8e-252 875.5 708 65.0
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 3.6e-252 875.2 731 63.5
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 1.4e-251 873.2 735 62.6
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 8.9e-251 870.5 738 63.3
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 8.9e-251 870.5 734 61.6
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 5.8e-250 867.8 734 61.9
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 2.2e-249 865.9 708 63.7
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 4.1e-248 861.7 740 61.4
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 3.9e-246 855.1 714 62.6
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 3.9e-246 855.1 707 62.4
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 8.6e-246 854.0 735 60.0
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.5e-245 853.2 746 60.7
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 3.3e-245 852.0 711 62.4
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 9.5e-245 850.5 735 61.4
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 2.1e-244 849.4 712 63.6
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 2.8e-244 849.0 748 60.6
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 3.1e-243 845.5 730 61.5
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 4.0e-243 845.1 716 61.2
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 3.4e-242 842.0 734 61.0
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 3.4e-242 842.0 732 60.1
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 2.9e-241 839.0 732 60.4
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 3.9e-238 828.6 661 66.0
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 8.6e-238 827.4 751 59.7
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 1.5e-237 826.6 748 59.5
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 3.3e-237 825.5 743 59.6
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 4.3e-237 825.1 739 59.4
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 7.3e-237 824.3 751 59.4
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 9.5e-237 823.9 688 62.8
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 1.2e-236 823.5 751 59.4
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 2.1e-236 822.8 723 60.9
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.8e-236 822.4 714 60.5
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 1.1e-235 820.5 734 59.4
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 1.8e-235 819.7 713 60.4
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.8e-235 819.7 733 59.3
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 3.1e-235 818.9 720 60.0
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 3.4e-234 815.5 708 60.7
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 1.3e-233 813.5 717 60.4
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 3.8e-233 812.0 675 64.0
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 6.4e-233 811.2 705 60.3
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 5.1e-230 801.6 712 60.4
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 4.3e-229 798.5 744 57.5
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 1.2e-228 797.0 651 66.1
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 8.4e-225 784.3 715 57.5
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 1.6e-223 780.0 571 70.4
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 3.4e-218 762.3 712 57.3
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 5.4e-216 755.0 733 56.6
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 7.1e-216 754.6 727 56.9
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 3.5e-215 752.3 716 56.7
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 8.7e-206 721.1 625 62.7
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.5e-205 719.5 531 69.9
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 2.9e-201 706.1 720 52.9
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 7.9e-199 698.0 653 58.8
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 5.7e-197 691.8 710 54.4
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 7.4e-197 691.4 565 64.4
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 3.4e-194 682.6 624 59.8
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.1e-191 671.8 552 64.1
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 3.3e-189 666.0 583 62.8
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 2.0e-186 656.8 712 53.1
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 4.5e-186 655.6 617 61.9
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 3.6e-183 646.0 709 51.5
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 6.1e-183 645.2 662 56.2
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 6.1e-183 645.2 502 66.5
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 2.9e-169 599.7 732 48.0
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 1.8e-158 563.9 725 46.9
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.3e-148 531.2 339 76.1
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 2.4e-131 473.8 875 37.8
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 2.4e-115 420.6 441 54.0
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.6e-109 400.6 265 74.0
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.6e-105 386.0 259 74.5
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 2.4e-78 297.7 521 37.0
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 1.3e-71 275.4 375 43.2
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 1.7e-60 238.4 328 44.5
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 9.1e-54 216.1 185 60.0
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 1.1e-51 209.1 546 32.6
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 7.5e-48 196.4 148 66.2
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 1.6e-45 188.7 295 38.6
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 2.4e-38 164.9 138 63.0
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 3.5e-37 161.0 122 66.4
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 7.0e-30 136.7 328 31.1
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 7.0e-30 136.7 177 45.8
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 4.5e-29 134.0 178 44.4
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 2.9e-28 131.3 187 42.2
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 2.6e-24 118.2 118 50.8
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 2.6e-24 118.2 128 54.7
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 5.8e-24 117.1 139 46.0
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 8.6e-20 103.2 320 30.3
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 3.1e-17 94.7 79 62.0
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 4.1e-14 84.3 77 55.8
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.1e-13 82.0 78 52.6
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.1e-13 82.0 78 52.6
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.3e-12 78.6 61 62.3
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 7.3e-11 73.6 85 42.4
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 8.1e-10 70.1 61 49.2
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.8e-09 68.9 42 78.6
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 7.5e-08 63.5 41 68.3


User provided reference genes

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