Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 4.4e-42 174.1 81 100.0
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 5.9e-23 110.5 58 89.7
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 1.3e-22 109.4 67 76.1
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 3.0e-22 108.2 65 81.5
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 3.9e-22 107.8 65 80.0
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 3.9e-22 107.8 53 92.5
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 5.0e-22 107.5 65 80.0
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 8.6e-22 106.7 64 84.4
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 1.5e-21 105.9 73 71.2
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 1.9e-21 105.5 57 87.7
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 1.9e-21 105.5 61 78.7
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 1.9e-21 105.5 62 82.3
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 3.3e-21 104.8 62 80.6
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 4.3e-21 104.4 62 79.0
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 4.3e-21 104.4 62 79.0
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 4.3e-21 104.4 62 79.0
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 4.3e-21 104.4 62 79.0
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 4.3e-21 104.4 63 81.0
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 4.3e-21 104.4 54 88.9
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 5.6e-21 104.0 57 86.0
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 5.6e-21 104.0 62 79.0
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 7.3e-21 103.6 65 78.5
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 7.3e-21 103.6 65 76.9
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 9.5e-21 103.2 69 75.4
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 9.5e-21 103.2 57 86.0
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 1.2e-20 102.8 53 90.6
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 1.2e-20 102.8 53 90.6
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 1.6e-20 102.4 74 67.6
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 2.1e-20 102.1 65 76.9
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 2.1e-20 102.1 54 85.2
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.1e-20 102.1 54 87.0
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.1e-20 102.1 54 87.0
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 2.1e-20 102.1 58 82.8
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 2.8e-20 101.7 63 81.0
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 2.8e-20 101.7 63 81.0
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 2.8e-20 101.7 58 79.3
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 2.8e-20 101.7 62 75.8
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 2.8e-20 101.7 53 86.8
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 3.6e-20 101.3 64 78.1
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 3.6e-20 101.3 53 86.8
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 3.6e-20 101.3 53 86.8
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 3.6e-20 101.3 53 86.8
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 4.7e-20 100.9 58 82.8
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 6.2e-20 100.5 53 86.8
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 6.2e-20 100.5 74 71.6
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 6.2e-20 100.5 57 82.5
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 8.0e-20 100.1 53 88.7
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 8.0e-20 100.1 53 88.7
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 1.1e-19 99.8 53 84.9
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 1.4e-19 99.4 53 83.0
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 1.4e-19 99.4 63 76.2
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 1.8e-19 99.0 58 81.0
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 1.8e-19 99.0 56 82.1
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 2.3e-19 98.6 58 77.6
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 3.1e-19 98.2 64 76.6
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 3.1e-19 98.2 63 77.8
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.1e-19 98.2 57 80.7
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.1e-19 98.2 57 80.7
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 3.1e-19 98.2 57 80.7
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 3.1e-19 98.2 63 76.2
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 4.0e-19 97.8 53 83.0
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 4.0e-19 97.8 63 77.8
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 5.2e-19 97.4 53 84.9
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 6.8e-19 97.1 53 83.0
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 6.8e-19 97.1 63 76.2
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 6.8e-19 97.1 66 68.2
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 6.8e-19 97.1 63 76.2
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 8.9e-19 96.7 54 85.2
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 8.9e-19 96.7 54 81.5
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 8.9e-19 96.7 63 73.0
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 8.9e-19 96.7 67 73.1
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 8.9e-19 96.7 63 77.8
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 1.2e-18 96.3 53 83.0
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.2e-18 96.3 69 69.6
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 1.2e-18 96.3 57 84.2
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 2.0e-18 95.5 53 84.9
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 2.0e-18 95.5 63 74.6
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 2.0e-18 95.5 66 72.7
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 2.6e-18 95.1 53 83.0
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 2.6e-18 95.1 53 83.0
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 2.6e-18 95.1 58 79.3
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 2.6e-18 95.1 65 70.8
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 3.4e-18 94.7 65 72.3
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 7.5e-18 93.6 63 74.6
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 1.3e-17 92.8 65 69.2
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 1.7e-17 92.4 72 61.1
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 2.2e-17 92.0 61 75.4
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 2.2e-17 92.0 78 57.7
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 2.9e-17 91.7 64 68.8
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 3.7e-17 91.3 58 70.7
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 3.7e-17 91.3 54 75.9
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 6.4e-17 90.5 62 71.0
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 6.4e-17 90.5 62 71.0
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 6.4e-17 90.5 62 71.0
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 6.4e-17 90.5 58 75.9
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 8.3e-17 90.1 59 74.6
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 8.3e-17 90.1 63 69.8
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 8.3e-17 90.1 65 60.0
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 1.1e-16 89.7 69 62.3
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.4e-16 89.4 64 68.8
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 1.9e-16 89.0 56 75.0
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 1.9e-16 89.0 63 69.8
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 1.9e-16 89.0 63 68.3
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 7.0e-16 87.0 63 66.7
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 1.6e-15 85.9 69 63.8
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 2.0e-15 85.5 74 60.8
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.7e-15 85.1 58 63.8
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 3.5e-15 84.7 52 73.1
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 3.5e-15 84.7 66 60.6
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.0e-14 83.2 55 72.7
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 2.3e-14 82.0 65 64.6
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 3.0e-14 81.6 53 69.8
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 2.5e-13 78.6 55 69.1
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 4.3e-13 77.8 54 64.8
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 7.3e-13 77.0 53 69.8
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 7.3e-13 77.0 61 60.7
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 9.5e-13 76.6 54 68.5
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 9.5e-13 76.6 53 62.3
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 1.2e-12 76.3 54 66.7
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 4.7e-12 74.3 54 61.1
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 3.1e-11 71.6 55 67.3
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 2.0e-10 68.9 39 82.1
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 3.4e-10 68.2 54 59.3
SEGI_39026 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 1.7e-09 65.9 55 56.4
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 3.2e-08 61.6 40 70.0
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 9.2e-08 60.1 40 77.5
Medtr5g006260 Medicago truncatula HOM05D006086 ORTHO05D007396 2.1e-07 58.9 77 40.3
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 4.6e-07 57.8 47 61.7
Mapoly0080s0018 Marchantia polymorpha HOM05D006086 ORTHO05D007396 1.0e-06 56.6 59 39.0
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 1.0e-06 56.6 48 56.2
DCAR_012810 Daucus carota HOM05D002570 ORTHO05D002689 2.3e-06 55.5 50 46.0


User provided reference genes

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