Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac3g04957 Beta vulgaris HOM05D001861 ORTHO05D001868 2.8e-118 428.7 233 100.0
Ah.04g155380 Amaranthus hybridus HOM05D001254 ORTHO05D007533 2.2e-41 173.3 214 57.0
Hund03077 Selenicereus undatus HOM05D001861 ORTHO05D001868 2.5e-37 159.8 264 49.6
AUR62002180 Chenopodium quinoa HOM05D001861 ORTHO05D001868 4.1e-32 142.5 211 47.4
Sc19g0003300 Simmondsia chinensis HOM05D001861 ORTHO05D001868 3.9e-19 99.4 251 42.2
Cc03_g06000 Coffea canephora HOM05D001861 ORTHO05D001868 2.8e-17 93.2 258 35.3
Dinv27095 Davidia involucrata HOM05D001861 ORTHO05D001868 2.0e-15 87.0 264 34.5
MSTRG.9871 Avicennia marina HOM05D001861 ORTHO05D001868 1.5e-13 80.9 247 32.8
Manes.15G044200 Manihot esculenta HOM05D001861 ORTHO05D001868 1.5e-13 80.9 255 33.7
GSVIVG01028395001 Vitis vinifera HOM05D001861 ORTHO05D001868 3.2e-13 79.7 238 35.7
Atru.chr4.1932 Acer truncatum HOM05D001861 ORTHO05D001868 5.5e-13 79.0 251 33.5
Duzib151G0538 Durio zibethinus HOM05D001861 ORTHO05D001868 5.5e-13 79.0 264 30.7
Manes.03G160500 Manihot esculenta HOM05D001861 ORTHO05D001868 7.2e-13 78.6 262 34.0
Rhsim04G0173700 Rhododendron simsii HOM05D001861 ORTHO05D001868 9.4e-13 78.2 252 32.1
TAR362G1165 Trochodendron aralioides HOM05D001861 ORTHO05D001868 9.4e-13 78.2 254 35.8
Dinv16385 Davidia involucrata HOM05D001861 ORTHO05D001868 1.2e-12 77.8 244 36.1
Psat6g061640 Pisum sativum HOM05D001861 ORTHO05D001868 1.2e-12 77.8 260 27.3
Thecc.04G261800 Theobroma cacao HOM05D001861 ORTHO05D001868 1.2e-12 77.8 270 28.9
CSS0000256 Camellia sinensis var. sinensis HOM05D001861 ORTHO05D001868 1.6e-12 77.4 264 35.6
CiPaw.01G179500 Carya illinoinensis HOM05D001861 ORTHO05D001868 1.6e-12 77.4 280 30.0
Actinidia20830 Actinidia chinensis HOM05D001861 ORTHO05D001868 2.7e-12 76.6 238 34.0
Gohir.A10G108300 Gossypium hirsutum HOM05D001861 ORTHO05D001868 2.7e-12 76.6 244 35.7
Dinv29817 Davidia involucrata HOM05D001861 ORTHO05D001868 3.6e-12 76.3 252 32.5
MD13G1219300 Malus domestica HOM05D001861 ORTHO05D001868 4.7e-12 75.9 231 32.5
Ciclev10005356m.g Citrus clementina HOM05D001861 ORTHO05D001868 1.0e-11 74.7 254 34.3
THA.LOC104815999 Tarenaya hassleriana HOM05D001861 ORTHO05D001868 1.0e-11 74.7 232 32.3
Gohir.D10G159500 Gossypium hirsutum HOM05D001861 ORTHO05D001868 1.4e-11 74.3 244 34.8
Gorai.011G179100 Gossypium raimondii HOM05D001861 ORTHO05D001868 1.8e-11 73.9 244 34.8
Oeu002285.1 Olea europaea HOM05D001861 ORTHO05D001868 1.8e-11 73.9 257 30.4
Actinidia09524 Actinidia chinensis HOM05D001861 ORTHO05D001868 2.3e-11 73.6 235 34.5
vmacro08539 Vaccinium macrocarpon HOM05D001861 ORTHO05D001868 2.3e-11 73.6 259 31.7
MD16G1224700 Malus domestica HOM05D001861 ORTHO05D001868 5.2e-11 72.4 232 37.5
CiPaw.03G268800 Carya illinoinensis HOM05D001861 ORTHO05D001868 6.7e-11 72.0 261 28.4
DCAR_018512 Daucus carota HOM05D001861 ORTHO05D001868 6.7e-11 72.0 267 29.6
Manes.13G037900 Manihot esculenta HOM05D001861 ORTHO05D001868 8.8e-11 71.6 242 30.6
QL06p020698 Quercus lobata HOM05D001861 ORTHO05D001868 1.2e-10 71.2 254 34.3
Sabra08G0130400 Salix brachista HOM05D001861 ORTHO05D001868 1.5e-10 70.9 266 28.6
GSVIVG01027898001 Vitis vinifera HOM05D001861 ORTHO05D001868 1.5e-10 70.9 265 35.5
Nn3g19746 Nelumbo nucifera HOM05D001861 ORTHO05D001868 2.0e-10 70.5 248 28.2
Lsat_1_v5_gn_9_10200 Lactuca sativa HOM05D001861 ORTHO05D001868 2.6e-10 70.1 244 31.1
Prupe.1G046000 Prunus persica HOM05D001861 ORTHO05D001868 2.6e-10 70.1 242 33.5
Cfa014768 Carpinus fangiana HOM05D001861 ORTHO05D001868 3.3e-10 69.7 268 29.9
THA.LOC104801071 Tarenaya hassleriana HOM05D001861 ORTHO05D001868 4.4e-10 69.3 233 30.0
Potri.008G170600 Populus trichocarpa HOM05D001861 ORTHO05D001868 5.7e-10 68.9 253 28.5
Potri.010G067300 Populus trichocarpa HOM05D001861 ORTHO05D001868 9.7e-10 68.2 255 32.5
TAR365G0301 Trochodendron aralioides HOM05D001861 ORTHO05D001868 1.7e-09 67.4 261 29.9
FAN12G4349 Fragaria x ananassa HOM05D001861 ORTHO05D001868 2.2e-09 67.0 246 34.6
Nitab4.5_0001051g0050 Nicotiana tabacum HOM05D001861 ORTHO05D001868 2.2e-09 67.0 230 30.0
TWI09G0555 Tripterygium wilfordii HOM05D001861 ORTHO05D001868 2.2e-09 67.0 257 31.5
Actinidia37543 Actinidia chinensis HOM05D001861 ORTHO05D001868 2.8e-09 66.6 242 30.2
CAN.G220.91 Capsicum annuum HOM05D001861 ORTHO05D001868 2.8e-09 66.6 230 36.1
SGA_v2.0_scaffold67G22706 Striga asiatica HOM05D001861 ORTHO05D001868 2.8e-09 66.6 246 30.5
ECA247G2121 Erigeron canadensis HOM05D001861 ORTHO05D001868 3.7e-09 66.2 253 25.7
SHI09722 Sapria himalayana HOM05D001861 ORTHO05D001868 3.7e-09 66.2 239 28.9
VMungo0720G0376 Vigna mungo HOM05D001861 ORTHO05D001868 3.7e-09 66.2 234 28.6
Eucgr.H02966 Eucalyptus grandis HOM05D001861 ORTHO05D001868 4.8e-09 65.9 260 33.8
Nitab4.5_0003295g0140 Nicotiana tabacum HOM05D001861 ORTHO05D001868 6.3e-09 65.5 277 27.8
Hma1.2p1_0112F.1_g054560 Hydrangea macrophylla HOM05D001861 ORTHO05D001868 8.2e-09 65.1 239 29.7
CARHR127410 Cardamine hirsuta HOM05D001861 ORTHO05D001868 1.4e-08 64.3 242 29.8
FvH4_4g04330 Fragaria vesca HOM05D001861 ORTHO05D001868 1.4e-08 64.3 247 34.4
Lj5g0016435 Lotus japonicus HOM05D001861 ORTHO05D001868 1.4e-08 64.3 246 27.6
Sabra02G0196600 Salix brachista HOM05D001861 ORTHO05D001868 1.4e-08 64.3 240 29.2
Prupe.8G218000 Prunus persica HOM05D001861 ORTHO05D001868 1.8e-08 63.9 239 33.1
CSS0024374 Camellia sinensis var. sinensis HOM05D001861 ORTHO05D001868 2.4e-08 63.5 260 28.5
CANSAT01G1959 Cannabis sativa HOM05D001861 ORTHO05D001868 2.4e-08 63.5 241 32.8
Ca_09656_v3 Cicer arietinum L. HOM05D001861 ORTHO05D001868 2.4e-08 63.5 233 26.2
FAN22G2180 Fragaria x ananassa HOM05D001861 ORTHO05D001868 2.4e-08 63.5 247 33.6
arahy.Tifrunner.gnm1.ann1.UUI0QM Arachis hypogaea HOM05D001861 ORTHO05D001868 3.1e-08 63.2 240 25.8
CSS0030260 Camellia sinensis var. sinensis HOM05D001861 ORTHO05D001868 3.1e-08 63.2 260 29.2
arahy.Tifrunner.gnm1.ann1.MP36QT Arachis hypogaea HOM05D001861 ORTHO05D001868 4.1e-08 62.8 258 29.5
Potri.002G258501 Populus trichocarpa HOM05D001861 ORTHO05D001868 4.1e-08 62.8 243 30.9
RcHm_v2.0_Chr4g0394781 Rosa chinensis HOM05D001861 ORTHO05D001868 4.1e-08 62.8 249 30.1
Actinidia30135 Actinidia chinensis HOM05D001861 ORTHO05D001868 5.3e-08 62.4 248 28.6
arahy.Tifrunner.gnm1.ann1.LSA08Y Arachis hypogaea HOM05D001861 ORTHO05D001868 5.3e-08 62.4 263 30.4
arahy.Tifrunner.gnm1.ann1.HF22WU Arachis hypogaea HOM05D001861 ORTHO05D001868 7.0e-08 62.0 238 27.3
A06p47510 Brassica napus HOM05D001861 ORTHO05D001868 7.0e-08 62.0 238 26.5
BraA06t27620Z Brassica rapa HOM05D001861 ORTHO05D001868 7.0e-08 62.0 238 26.5
arahy.Tifrunner.gnm1.ann1.R49I8U Arachis hypogaea HOM05D001861 ORTHO05D001868 9.1e-08 61.6 240 25.4
FAN17G0443 Fragaria x ananassa HOM05D001861 ORTHO05D001868 9.1e-08 61.6 243 36.2
Lalb_Chr02g0152681 Lupinus albus HOM05D001861 ORTHO05D001868 9.1e-08 61.6 256 32.8
Aa31LG5G3890 Aethionema arabicum HOM05D001861 ORTHO05D001868 1.2e-07 61.2 236 28.0
AL4G29070 Arabidopsis lyrata HOM05D001861 ORTHO05D001868 1.2e-07 61.2 233 29.2
Thhalv10007735m.g Eutrema salsugineum HOM05D001861 ORTHO05D001868 1.2e-07 61.2 235 24.3
Nn1g02913 Nelumbo nucifera HOM05D001861 ORTHO05D001868 1.2e-07 61.2 266 32.7
TAR633G1161 Trochodendron aralioides HOM05D001861 ORTHO05D001868 1.2e-07 61.2 260 29.2
C07p26660 Brassica napus HOM05D001861 ORTHO05D001868 1.6e-07 60.8 197 27.4
CiPaw.04G189000 Carya illinoinensis HOM05D001861 ORTHO05D001868 2.0e-07 60.5 253 30.0
Cc01_g17950 Coffea canephora HOM05D001861 ORTHO05D001868 2.0e-07 60.5 272 27.9
ECA248G2428 Erigeron canadensis HOM05D001861 ORTHO05D001868 2.0e-07 60.5 231 26.4
vmacro02703 Vaccinium macrocarpon HOM05D001861 ORTHO05D001868 2.0e-07 60.5 186 29.0
BcaC06g34600 Brassica carinata HOM05D001861 ORTHO05D001868 2.7e-07 60.1 194 27.3
BolC7t43195H Brassica oleracea HOM05D001861 ORTHO05D001868 2.7e-07 60.1 194 27.3
Lj2A1144T90 Lonicera japonica HOM05D001861 ORTHO05D001868 2.7e-07 60.1 265 26.4
THA.LOC104826049 Tarenaya hassleriana HOM05D001861 ORTHO05D001868 2.7e-07 60.1 249 26.5
CSS0015268 Camellia sinensis var. sinensis HOM05D001861 ORTHO05D001868 4.5e-07 59.3 265 27.5
CAN.G1380.1 Capsicum annuum HOM05D001861 ORTHO05D001868 4.5e-07 59.3 255 28.6
TPR.G5651 Trifolium pratense HOM05D001861 ORTHO05D001868 4.5e-07 59.3 249 27.7
Carub.0004s1503 Capsella rubella HOM05D001861 ORTHO05D001868 5.9e-07 58.9 233 29.6
Haze_24681 Corylus avellana HOM05D001861 ORTHO05D001868 5.9e-07 58.9 235 30.2
MD05G1191900 Malus domestica HOM05D001861 ORTHO05D001868 5.9e-07 58.9 241 33.2
Solyc09g072800.3 Solanum lycopersicum HOM05D001861 ORTHO05D001868 5.9e-07 58.9 246 26.4
MBI10_g19242_MAGBIO Magnolia biondii HOM05D001861 ORTHO05D001868 7.7e-07 58.5 251 32.7
Sopen09g028590 Solanum pennellii HOM05D001861 ORTHO05D001868 7.7e-07 58.5 246 26.4
Eucgr.A01357 Eucalyptus grandis HOM05D001861 ORTHO05D001868 1.0e-06 58.2 284 26.1
PSO674G0045 Papaver somniferum HOM05D001861 ORTHO05D001868 1.0e-06 58.2 286 27.3
Rhsim13G0039200 Rhododendron simsii HOM05D001861 ORTHO05D001868 1.3e-06 57.8 232 26.7
THA.LOC104801136 Tarenaya hassleriana HOM05D001861 ORTHO05D001868 1.3e-06 57.8 248 25.8
Atru.chr5.1809 Acer truncatum HOM05D001861 ORTHO05D001868 1.7e-06 57.4 246 30.1
AT2G33400 Arabidopsis thaliana HOM05D001861 ORTHO05D001868 1.7e-06 57.4 244 28.7
MBI07_g20245_MAGBIO Magnolia biondii HOM05D001861 ORTHO05D001868 1.7e-06 57.4 245 33.5
QL09p040988 Quercus lobata HOM05D001861 ORTHO05D001868 1.7e-06 57.4 262 27.9
Sed0022466 Sechium edule HOM05D001861 ORTHO05D001868 1.7e-06 57.4 233 27.9
PSO832G1062 Papaver somniferum HOM05D001861 ORTHO05D001868 2.2e-06 57.0 286 26.6
Sc05g0003130 Simmondsia chinensis HOM05D001861 ORTHO05D001868 2.2e-06 57.0 292 28.1
Cpa.g.sc44.16 Carica papaya HOM05D001861 ORTHO05D001868 2.9e-06 56.6 173 30.6
Phvul.007G190400 Phaseolus vulgaris HOM05D001861 ORTHO05D001868 2.9e-06 56.6 239 25.9
VMungo1383G3726 Vigna mungo HOM05D001861 ORTHO05D001868 2.9e-06 56.6 252 25.8
Glyma.10G039500 Glycine max HOM05D001861 ORTHO05D001868 3.8e-06 56.2 237 26.6
Thhalv10017083m.g Eutrema salsugineum HOM05D001861 ORTHO05D001868 6.5e-06 55.5 242 29.3
Peaxi162Scf00415g00518 Petunia axillaris HOM05D001861 ORTHO05D001868 6.5e-06 55.5 265 26.4
Hund06903 Selenicereus undatus HOM05D001861 ORTHO05D001868 6.5e-06 55.5 261 23.0
Ciclev10020148m.g Citrus clementina HOM05D001861 ORTHO05D001868 8.5e-06 55.1 246 27.6
MELO3C023034.2 Cucumis melo HOM05D001861 ORTHO05D001868 8.5e-06 55.1 234 27.8
CsaV3_3G028230 Cucumis sativus L. HOM05D001861 ORTHO05D001868 8.5e-06 55.1 267 24.7
Glyma.19G167200 Glycine max HOM05D001861 ORTHO05D001868 8.5e-06 55.1 252 29.0
Lalb_Chr21g0314071 Lupinus albus HOM05D001861 ORTHO05D001868 8.5e-06 55.1 252 25.4
Nitab4.5_0002389g0030 Nicotiana tabacum HOM05D001861 ORTHO05D001868 8.5e-06 55.1 278 28.1


User provided reference genes

Program Settings