Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 2.4e-63 245.4 126 100.0
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 3.0e-58 228.4 126 92.9
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 7.0e-55 217.2 126 87.3
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.7e-53 212.6 126 89.7
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.7e-48 196.1 124 79.0
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 3.5e-46 188.3 124 75.8
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 3.5e-46 188.3 124 75.8
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 3.1e-42 175.3 127 73.2
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 8.9e-42 173.7 131 74.0
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 1.2e-41 173.3 125 76.8
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 2.0e-41 172.6 132 72.0
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 2.0e-41 172.6 131 73.3
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 2.0e-41 172.6 112 79.5
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 2.6e-41 172.2 124 75.0
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 2.6e-41 172.2 124 76.6
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 2.6e-41 172.2 131 72.5
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 2.6e-41 172.2 122 76.2
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 5.8e-41 171.0 130 73.8
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 5.8e-41 171.0 129 72.1
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 7.5e-41 170.6 121 75.2
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 7.5e-41 170.6 131 74.0
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 9.8e-41 170.2 124 74.2
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 1.3e-40 169.9 112 77.7
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.7e-40 169.5 131 71.0
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 1.7e-40 169.5 127 73.2
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 2.9e-40 168.7 127 74.0
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 3.7e-40 168.3 131 67.9
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 3.7e-40 168.3 128 72.7
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 4.9e-40 167.9 125 70.4
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 4.9e-40 167.9 125 70.4
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 4.9e-40 167.9 127 72.4
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 4.9e-40 167.9 128 71.1
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 6.4e-40 167.5 127 73.2
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 6.4e-40 167.5 124 72.6
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 8.3e-40 167.2 134 70.9
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 8.3e-40 167.2 127 72.4
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 8.3e-40 167.2 124 72.6
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.1e-39 166.8 134 71.6
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.1e-39 166.8 133 72.9
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 1.4e-39 166.4 132 68.2
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 1.4e-39 166.4 132 68.9
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.4e-39 166.4 123 71.5
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.4e-39 166.4 123 71.5
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.4e-39 166.4 123 71.5
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 1.4e-39 166.4 131 73.3
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 1.9e-39 166.0 124 73.4
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.9e-39 166.0 131 72.5
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 3.2e-39 165.2 113 75.2
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 3.2e-39 165.2 113 75.2
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 3.2e-39 165.2 124 75.8
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 3.2e-39 165.2 132 68.2
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 4.1e-39 164.9 131 70.2
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 5.4e-39 164.5 128 69.5
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 5.4e-39 164.5 127 70.9
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 5.4e-39 164.5 126 71.4
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 5.4e-39 164.5 126 73.0
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 5.4e-39 164.5 129 71.3
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 7.1e-39 164.1 133 67.7
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 7.1e-39 164.1 133 67.7
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 7.1e-39 164.1 131 69.5
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 9.2e-39 163.7 131 71.8
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 9.2e-39 163.7 128 71.1
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 9.2e-39 163.7 125 71.2
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.2e-38 163.3 126 71.4
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 1.6e-38 162.9 117 75.2
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 1.6e-38 162.9 135 70.4
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.6e-38 162.9 97 83.5
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 1.6e-38 162.9 126 70.6
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 1.6e-38 162.9 129 66.7
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.1e-38 162.5 132 68.9
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 2.1e-38 162.5 126 72.2
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 2.7e-38 162.2 128 68.8
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 2.7e-38 162.2 108 77.8
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 3.5e-38 161.8 124 70.2
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 4.6e-38 161.4 131 69.5
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 4.6e-38 161.4 131 70.2
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 4.6e-38 161.4 124 70.2
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 4.6e-38 161.4 131 68.7
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 6.0e-38 161.0 124 69.4
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 6.0e-38 161.0 101 79.2
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 7.8e-38 160.6 110 73.6
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 7.8e-38 160.6 130 69.2
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 1.0e-37 160.2 126 70.6
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 1.0e-37 160.2 126 70.6
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 1.0e-37 160.2 110 75.5
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 1.0e-37 160.2 110 75.5
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 1.0e-37 160.2 110 75.5
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.0e-37 160.2 109 81.7
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 1.0e-37 160.2 123 71.5
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.3e-37 159.8 131 71.0
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.3e-37 159.8 126 69.0
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 1.3e-37 159.8 128 72.7
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 1.3e-37 159.8 123 71.5
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.7e-37 159.5 131 69.5
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.7e-37 159.5 129 68.2
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.7e-37 159.5 129 68.2
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.7e-37 159.5 118 71.2
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 2.3e-37 159.1 127 71.7
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.3e-37 159.1 125 68.0
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 3.0e-37 158.7 128 70.3
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 3.0e-37 158.7 102 77.5
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 3.0e-37 158.7 125 72.0
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 3.0e-37 158.7 131 67.9
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 3.9e-37 158.3 123 70.7
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 5.1e-37 157.9 128 67.2
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 5.1e-37 157.9 133 66.9
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 6.6e-37 157.5 125 70.4
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 6.6e-37 157.5 126 68.3
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.1e-36 156.8 125 66.4
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 1.1e-36 156.8 113 72.6
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 1.1e-36 156.8 123 69.9
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 1.9e-36 156.0 110 71.8
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 1.9e-36 156.0 130 69.2
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.5e-36 155.6 127 71.7
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 3.3e-36 155.2 118 71.2
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 7.3e-36 154.1 97 79.4
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 7.3e-36 154.1 124 71.8
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 1.6e-35 152.9 121 68.6
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 2.1e-35 152.5 131 67.2
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 2.1e-35 152.5 125 67.2
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 2.8e-35 152.1 123 65.9
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 3.6e-35 151.8 129 62.8
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 4.7e-35 151.4 83 89.2
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 6.2e-35 151.0 83 89.2
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 6.2e-35 151.0 121 71.1
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 2.3e-34 149.1 132 64.4
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 1.5e-33 146.4 123 68.3
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 2.0e-33 146.0 112 70.5
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 5.8e-33 144.4 122 68.0
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 5.8e-33 144.4 113 72.6
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 3.7e-32 141.7 102 74.5
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.4e-31 139.0 122 66.4
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 9.2e-31 137.1 125 59.2
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.6e-30 136.3 108 68.5
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 7.8e-30 134.0 83 80.7
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 1.0e-29 133.7 122 63.1
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 8.9e-26 120.6 102 64.7
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.6e-25 119.0 69 85.5
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 1.7e-24 116.3 126 57.1
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 4.6e-22 108.2 126 52.4
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 2.3e-21 105.9 78 71.8
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 2.3e-21 105.9 109 55.0
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 3.3e-20 102.1 127 55.1
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 9.6e-20 100.5 67 76.1
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 1.3e-19 100.1 84 59.5
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 1.3e-19 100.1 56 83.9
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 2.8e-19 99.0 95 62.1
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.1e-18 95.5 71 71.8
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.9e-18 94.4 90 60.0
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 6.9e-18 94.4 94 59.6
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 9.9e-17 90.5 69 69.6
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.3e-16 90.1 89 59.6
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 3.8e-16 88.6 104 48.1
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 3.9e-13 78.6 65 60.0
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.2e-06 57.0 33 75.8


User provided reference genes

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