Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 0.0e+00 1186.8 587 100.0
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 8.8e-217 757.3 468 80.8
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.6e-178 630.2 500 63.8
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 4.7e-178 628.6 494 65.2
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.5e-171 606.3 500 61.8
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.8e-157 558.1 487 59.8
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 3.9e-156 555.8 447 61.3
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 8.6e-156 554.7 489 59.3
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 6.8e-153 545.0 473 60.0
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 8.9e-153 544.7 511 56.6
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.9e-153 544.7 492 57.9
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 1.3e-151 540.8 469 60.1
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 3.8e-151 539.3 449 62.1
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 1.9e-150 537.0 482 57.7
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.1e-150 535.0 492 57.1
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 4.4e-144 515.8 476 56.9
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 8.4e-143 511.5 490 55.5
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 1.4e-142 510.8 490 55.5
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 5.4e-142 508.8 489 55.2
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 7.1e-142 508.4 490 55.9
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 2.7e-141 506.5 490 54.7
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 3.5e-141 506.1 490 55.3
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 3.5e-141 506.1 492 54.5
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 4.6e-141 505.8 490 54.9
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 1.0e-140 504.6 489 55.8
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 1.3e-140 504.2 490 54.3
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 3.0e-140 503.1 495 54.1
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 3.0e-140 503.1 489 55.2
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 5.1e-140 502.3 495 54.1
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 5.1e-140 502.3 492 54.7
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 6.6e-140 501.9 495 54.5
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 8.7e-140 501.5 501 54.3
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 8.7e-140 501.5 490 54.9
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 8.7e-140 501.5 489 54.6
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 8.7e-140 501.5 490 54.9
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.1e-139 501.1 489 54.4
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 5.6e-139 498.8 488 55.1
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 5.6e-139 498.8 489 54.0
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 2.1e-138 496.9 459 56.0
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 2.8e-138 496.5 490 54.3
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 6.2e-138 495.4 489 54.0
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 6.2e-138 495.4 490 54.1
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 5.3e-137 492.3 486 53.1
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 6.9e-137 491.9 493 51.5
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 1.2e-136 491.1 515 52.2
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 2.6e-136 490.0 460 55.4
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 3.4e-136 489.6 489 55.2
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 4.5e-136 489.2 494 51.0
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 4.5e-136 489.2 490 54.5
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 9.9e-136 488.0 484 54.5
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 1.7e-135 487.3 492 53.7
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 2.2e-135 486.9 490 52.9
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 2.9e-135 486.5 491 54.4
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 2.9e-135 486.5 496 52.0
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 3.8e-135 486.1 494 51.2
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 3.8e-135 486.1 489 54.0
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 6.4e-135 485.3 488 52.7
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 8.4e-135 485.0 459 54.2
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 8.4e-135 485.0 487 52.6
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 1.1e-134 484.6 493 52.3
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 1.4e-134 484.2 489 54.4
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.9e-134 483.8 528 50.6
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 2.4e-134 483.4 490 53.5
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 3.2e-134 483.0 490 53.5
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 3.2e-134 483.0 498 52.2
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 7.1e-134 481.9 490 52.9
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 9.3e-134 481.5 492 53.0
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 9.3e-134 481.5 496 51.8
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 1.2e-133 481.1 475 54.5
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.6e-133 480.7 487 52.8
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 2.7e-133 479.9 507 51.9
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 6.0e-133 478.8 490 52.0
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 6.0e-133 478.8 490 53.5
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.0e-132 478.0 522 48.5
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 1.8e-132 477.2 562 47.7
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 6.7e-132 475.3 487 52.2
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 1.1e-131 474.6 491 51.9
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 1.9e-131 473.8 487 51.7
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 4.3e-131 472.6 489 52.8
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 6.2e-130 468.8 489 51.1
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.4e-129 466.8 478 52.9
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.4e-129 466.8 489 51.5
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 4.0e-129 466.1 487 52.0
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 5.3e-129 465.7 527 48.4
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 2.2e-127 460.3 491 50.5
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 2.9e-127 459.9 496 50.8
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 3.2e-126 456.4 491 50.9
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 4.2e-126 456.1 493 51.1
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 2.3e-124 450.3 509 49.1
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 3.0e-124 449.9 489 49.9
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 8.7e-124 448.4 485 52.2
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 8.7e-124 448.4 586 45.6
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 1.1e-123 448.0 486 50.4
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 7.4e-123 445.3 494 50.2
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 1.3e-122 444.5 497 50.3
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 2.1e-122 443.7 493 48.9
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.0e-116 424.9 522 47.9
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 5.1e-116 422.5 423 54.4
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 1.9e-115 420.6 251 82.5
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 1.6e-114 417.5 496 46.4
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.4e-110 404.4 497 47.3
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 1.9e-110 404.1 497 46.9
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.0e-107 394.0 386 54.9
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.7e-106 391.0 456 47.6
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 1.7e-106 391.0 395 51.4
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 7.7e-104 382.1 493 45.4
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 5.0e-103 379.4 504 44.0
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 1.4e-102 377.9 497 47.9
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 4.2e-102 376.3 489 44.8
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 4.7e-101 372.9 487 43.3
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 1.1e-97 361.7 506 41.1
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.6e-96 357.1 357 53.8
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 2.5e-94 350.5 407 44.7
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 9.4e-94 348.6 463 44.5
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.8e-92 344.4 427 45.7
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.1e-91 341.7 436 44.5
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 3.1e-89 333.6 320 55.3
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 2.9e-87 327.0 398 45.2
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 1.2e-85 321.6 395 48.1
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 5.2e-84 316.2 321 52.0
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 1.1e-81 308.5 397 45.8
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 1.8e-81 307.8 634 32.8
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.8e-81 307.8 326 50.0
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 2.0e-80 304.3 322 51.6
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.5e-78 297.4 341 49.6
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 3.0e-76 290.4 353 45.9
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 2.2e-74 284.3 327 50.2
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 1.1e-73 282.0 409 42.3
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.2e-72 278.5 294 52.7
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 7.5e-67 259.2 238 56.3
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.0e-64 251.1 279 48.4
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.0e-59 234.6 173 65.3
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.3e-58 231.9 433 37.4
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.9e-58 230.7 194 59.8
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 3.7e-58 230.3 240 47.9
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.0e-55 222.2 231 47.6
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.1e-53 212.6 199 53.8
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 6.8e-52 209.5 613 29.7
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.8e-52 209.5 279 42.7
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.2e-48 198.7 124 75.0
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 1.1e-46 192.2 489 30.7
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 1.4e-44 185.3 125 70.4
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 1.8e-44 184.9 131 68.7
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 5.2e-44 183.3 127 68.5
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 2.6e-43 181.0 130 66.2
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 9.9e-43 179.1 131 64.1
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.2e-42 177.9 131 63.4
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 4.9e-42 176.8 125 67.2
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 3.6e-37 160.6 125 64.0
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 1.2e-35 155.6 125 60.8
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.1e-33 149.1 83 80.7
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.5e-30 137.9 125 56.0
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.6e-29 135.2 121 54.5
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 4.0e-28 130.6 139 51.8
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 9.3e-25 119.4 97 60.8
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 3.5e-24 117.5 83 67.5
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.4e-22 109.8 101 58.4
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.0e-15 89.4 76 48.7
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 2.5e-09 68.2 66 47.0
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 6.0e-08 63.5 74 45.9
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 1.3e-07 62.4 74 47.3
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 5.7e-06 57.0 55 50.9


User provided reference genes

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