Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 1.5e-297 1025.4 510 100.0
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 3.4e-217 758.4 468 80.8
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 2.6e-185 652.5 506 67.0
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.5e-183 646.0 498 65.9
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 9.8e-172 607.4 498 62.4
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.6e-160 567.8 483 59.8
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.5e-159 567.0 456 61.4
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 1.2e-158 563.9 510 57.6
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 1.6e-158 563.5 488 60.2
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.0e-157 560.8 490 59.4
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 1.2e-156 557.4 509 57.4
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 2.6e-156 556.2 463 62.2
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 9.8e-156 554.3 452 63.5
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.7e-155 552.4 490 58.6
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 3.5e-153 545.8 477 58.7
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 3.7e-147 525.8 488 55.3
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 2.4e-146 523.1 516 53.9
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 2.4e-146 523.1 516 53.9
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 4.1e-146 522.3 522 53.1
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 1.2e-145 520.8 484 56.2
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 2.7e-145 519.6 516 54.1
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 5.0e-144 515.4 540 50.9
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.1e-143 514.2 492 53.7
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.9e-143 513.5 496 54.8
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 3.3e-143 512.7 492 53.9
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 9.5e-143 511.1 486 54.5
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 1.2e-142 510.8 488 55.9
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 3.6e-142 509.2 488 54.3
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 1.8e-141 506.9 493 54.2
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 4.0e-141 505.8 524 51.5
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 1.2e-140 504.2 493 53.8
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 1.5e-140 503.8 488 54.5
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 2.0e-140 503.4 488 54.7
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 2.0e-140 503.4 493 54.2
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 3.4e-140 502.7 466 55.8
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 3.4e-140 502.7 488 54.7
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 3.4e-140 502.7 488 55.1
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 5.8e-140 501.9 488 54.7
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 9.9e-140 501.1 487 54.4
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 9.9e-140 501.1 488 54.1
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 9.9e-140 501.1 488 54.3
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 1.3e-139 500.7 548 50.2
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 2.9e-139 499.6 513 53.2
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 3.7e-139 499.2 513 51.5
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 8.3e-139 498.0 531 50.8
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 1.4e-138 497.3 466 54.9
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.4e-138 497.3 487 54.0
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 3.2e-138 496.1 488 53.7
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 5.4e-138 495.4 515 50.7
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 5.4e-138 495.4 537 48.6
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 5.4e-138 495.4 480 54.6
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 5.4e-138 495.4 490 52.7
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 7.1e-138 495.0 488 53.5
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 9.2e-138 494.6 487 53.8
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 1.6e-137 493.8 494 53.4
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.6e-137 493.8 516 51.9
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 2.1e-137 493.4 495 51.7
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 3.5e-137 492.7 494 50.8
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 4.6e-137 492.3 494 50.2
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 7.8e-137 491.5 490 53.5
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 1.3e-136 490.7 469 53.9
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.3e-136 490.7 493 52.5
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 1.7e-136 490.3 488 53.5
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 1.7e-136 490.3 473 54.8
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 1.7e-136 490.3 486 51.9
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 5.1e-136 488.8 490 51.8
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 5.1e-136 488.8 492 51.8
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 6.6e-136 488.4 494 51.2
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 8.6e-136 488.0 486 54.1
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 8.6e-136 488.0 488 52.0
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 4.3e-135 485.7 571 46.8
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 5.6e-135 485.3 489 52.1
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 1.2e-134 484.2 488 51.0
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 1.2e-134 484.2 490 53.1
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 1.6e-134 483.8 486 53.3
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 1.6e-134 483.8 490 51.8
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 4.7e-134 482.3 478 54.4
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.1e-133 481.1 522 47.7
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 1.8e-133 480.3 487 52.8
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 2.4e-133 479.9 491 51.3
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.2e-132 477.6 493 52.1
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 1.2e-132 477.6 488 51.4
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 5.8e-132 475.3 495 51.7
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 8.4e-131 471.5 527 46.9
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 1.1e-130 471.1 495 50.7
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 1.1e-130 471.1 490 50.2
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 7.1e-130 468.4 513 49.5
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 8.7e-128 461.5 515 48.7
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 1.1e-127 461.1 491 49.3
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 5.6e-127 458.8 489 49.7
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 1.2e-126 457.6 482 52.1
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.1e-125 454.5 489 49.9
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 2.4e-125 453.4 509 48.9
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 2.2e-123 446.8 587 44.5
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 8.4e-123 444.9 485 49.3
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 1.4e-122 444.1 485 49.3
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 4.6e-121 439.1 493 48.5
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 1.9e-119 433.7 251 88.0
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.1e-117 427.9 423 54.1
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.7e-115 420.6 492 47.4
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.4e-114 417.5 499 47.3
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 3.2e-114 416.4 532 45.3
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.8e-109 400.6 385 55.3
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 4.5e-108 396.0 532 42.9
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 9.9e-108 394.8 393 51.7
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 1.1e-106 391.3 480 46.0
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.1e-106 391.3 449 48.1
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 1.4e-106 391.0 495 47.1
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 4.8e-102 375.9 504 42.7
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.8e-101 374.0 484 44.8
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.5e-98 363.6 357 54.6
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 3.2e-98 363.2 506 39.7
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 3.5e-97 359.8 438 46.6
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 6.0e-97 359.0 495 41.0
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 7.4e-95 352.1 386 45.6
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 3.7e-94 349.7 463 44.1
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 3.2e-90 336.7 331 53.2
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 5.1e-88 329.3 398 45.5
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.3e-86 322.4 346 49.1
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 3.1e-85 320.1 396 46.7
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 4.2e-82 309.7 337 49.3
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 2.0e-79 300.8 335 48.7
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 5.7e-79 299.3 642 31.9
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 3.1e-77 293.5 345 49.0
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 5.3e-77 292.7 405 43.2
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 7.0e-77 292.4 418 42.8
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.4e-74 284.6 343 44.9
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 1.2e-73 281.6 327 48.9
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 4.7e-73 279.6 298 52.3
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 2.6e-71 273.9 241 56.0
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.2e-63 248.4 236 50.8
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.3e-63 246.9 171 70.2
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.8e-62 243.0 280 46.4
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 3.5e-60 236.9 226 50.0
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.5e-58 229.6 197 59.4
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 2.3e-56 224.2 425 36.0
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 9.8e-55 218.8 349 37.8
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-54 218.4 195 58.5
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 3.6e-49 200.3 614 27.5
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 7.5e-47 192.6 484 31.0
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 9.2e-45 185.7 168 57.7
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.2e-44 185.3 131 69.5
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 2.3e-43 181.0 127 67.7
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 2.3e-43 181.0 166 56.6
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 2.9e-43 180.6 125 68.8
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.5e-42 177.6 133 62.4
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 4.3e-42 176.8 133 62.4
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 8.0e-41 172.6 127 64.6
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 2.6e-39 167.5 169 51.5
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 5.0e-35 153.3 153 51.0
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.0e-31 141.4 121 59.5
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 9.8e-31 139.0 85 75.3
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.3e-30 138.7 153 48.4
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.0e-24 117.1 99 59.6
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 6.8e-24 116.3 83 65.1
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 1.7e-22 111.7 186 38.7
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.5e-18 98.6 197 38.1
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.9e-18 98.2 78 52.6
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 2.3e-11 74.7 67 49.3


User provided reference genes

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