Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 0.0e+00 1256.9 629 100.0
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 7.9e-264 913.7 637 73.3
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.1e-249 866.7 590 75.1
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 8.2e-237 823.9 633 67.8
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 6.1e-208 728.0 627 62.0
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.1e-196 690.6 638 57.8
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.7e-194 683.3 633 56.4
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 5.6e-193 678.3 633 56.1
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.2e-192 677.2 547 66.2
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.8e-191 673.3 638 56.7
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.1e-188 664.1 649 55.3
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 1.8e-188 663.3 643 55.5
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 5.9e-187 658.3 633 55.9
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 1.3e-186 657.1 638 56.1
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 3.9e-186 655.6 631 55.6
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 3.3e-185 652.5 637 55.4
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 9.5e-185 651.0 637 53.4
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 2.8e-184 649.4 640 54.8
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 3.6e-184 649.0 638 55.2
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 4.7e-184 648.7 624 55.4
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 6.2e-184 648.3 635 54.8
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 1.0e-183 647.5 640 55.9
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 6.8e-183 644.8 641 54.4
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 6.8e-183 644.8 638 54.9
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 2.0e-182 643.3 631 54.2
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 5.8e-182 641.7 642 54.7
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 7.5e-182 641.3 622 54.3
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 2.9e-181 639.4 632 53.3
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 3.7e-181 639.0 641 54.0
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 4.9e-181 638.6 633 54.8
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 1.4e-180 637.1 634 55.0
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 5.4e-180 635.2 641 54.0
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 6.0e-179 631.7 633 53.1
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.3e-178 630.6 627 53.0
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 1.7e-178 630.2 640 52.5
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 8.6e-178 627.9 624 54.0
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 1.5e-177 627.1 634 53.9
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 1.9e-177 626.7 640 53.4
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 1.9e-177 626.7 617 55.4
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 9.5e-177 624.4 653 52.4
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 2.1e-176 623.2 674 52.1
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 6.2e-176 621.7 578 58.3
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 8.1e-176 621.3 618 53.6
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 4.0e-175 619.0 638 53.0
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 6.8e-175 618.2 631 53.1
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 2.0e-174 616.7 645 54.1
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 2.0e-174 616.7 628 53.2
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 2.6e-174 616.3 634 53.8
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 6.4e-173 611.7 637 51.3
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 8.3e-173 611.3 635 53.4
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 1.9e-172 610.1 636 53.3
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 4.1e-172 609.0 633 53.2
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 7.1e-172 608.2 612 54.7
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 2.3e-170 603.2 637 52.3
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 8.6e-170 601.3 627 52.8
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 3.3e-169 599.4 580 55.5
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 5.6e-169 598.6 637 50.4
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.2e-168 597.4 686 49.4
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 3.6e-168 595.9 641 51.0
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 7.6e-166 588.2 629 52.6
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.3e-165 587.4 625 52.6
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 4.9e-165 585.5 640 52.2
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 1.1e-164 584.3 641 49.8
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.1e-164 584.3 621 52.0
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 1.1e-164 584.3 647 51.8
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 2.4e-164 583.2 494 63.0
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 7.1e-164 581.6 648 50.6
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 9.2e-164 581.3 637 50.1
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 9.2e-164 581.3 647 49.8
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 1.2e-163 580.9 636 51.6
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.2e-163 580.9 661 51.6
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 1.6e-163 580.5 626 50.0
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.3e-162 577.4 639 49.1
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 2.3e-162 576.6 653 49.2
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 3.0e-162 576.2 630 51.3
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 3.9e-162 575.9 632 51.3
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 5.1e-162 575.5 623 51.8
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 6.6e-162 575.1 632 51.1
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 6.6e-162 575.1 645 51.8
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 8.6e-162 574.7 626 51.0
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 1.2e-160 570.9 631 51.0
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 1.2e-160 570.9 632 50.2
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 6.2e-160 568.5 632 50.0
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 6.2e-160 568.5 632 50.0
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 8.1e-160 568.2 632 51.1
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 5.2e-159 565.5 638 49.7
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 5.2e-159 565.5 638 49.7
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 6.9e-159 565.1 530 57.5
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 2.6e-158 563.1 633 50.6
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 1.3e-157 560.8 558 54.1
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 1.3e-157 560.8 633 50.7
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 3.8e-157 559.3 668 48.4
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 8.4e-157 558.1 585 52.3
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.1e-156 557.8 629 50.4
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 6.0e-155 552.0 630 48.4
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 6.6e-154 548.5 631 49.6
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.5e-153 547.4 634 50.0
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.1e-152 543.5 567 51.7
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 8.1e-152 541.6 646 49.2
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 8.1e-152 541.6 629 48.3
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 1.1e-151 541.2 626 47.9
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 3.1e-151 539.7 589 49.6
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 3.1e-151 539.7 662 47.9
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 3.1e-151 539.7 637 49.1
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 2.0e-150 537.0 647 48.2
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 3.4e-150 536.2 532 53.0
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 7.6e-150 535.0 630 49.5
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 9.9e-150 534.6 600 50.7
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.6e-147 527.3 596 47.8
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 1.6e-147 527.3 571 50.6
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 3.5e-147 526.2 580 48.6
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 4.6e-147 525.8 708 45.8
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 1.1e-145 521.2 495 56.4
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 3.7e-144 516.2 488 55.5
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 3.1e-143 513.1 612 49.7
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 4.0e-143 512.7 485 54.2
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 2.9e-141 506.5 486 55.3
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.2e-140 502.7 626 47.3
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 1.2e-139 501.1 525 51.6
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 1.3e-138 497.7 654 46.2
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.1e-137 494.6 569 49.0
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 3.3e-137 493.0 666 45.9
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 6.2e-136 488.8 574 49.3
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 7.9e-131 471.9 629 43.6
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 1.9e-124 450.7 489 50.7
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 7.2e-116 422.2 427 53.9
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 7.9e-115 418.7 496 47.4
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 7.9e-115 418.7 496 47.4
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 1.5e-113 414.5 620 41.8
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 6.3e-112 409.1 699 37.6
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 4.1e-111 406.4 472 48.9
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 6.5e-109 399.1 475 48.4
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 1.9e-108 397.5 632 40.5
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 9.4e-108 395.2 515 44.9
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 2.0e-102 377.5 380 52.6
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 6.1e-99 365.9 492 45.3
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 8.0e-99 365.5 622 37.8
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 1.0e-77 295.4 513 37.8
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 2.1e-67 261.2 679 30.9
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 3.4e-57 227.3 286 47.6
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.9e-55 221.5 359 38.7
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 6.4e-48 196.4 174 52.9
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 1.5e-44 185.3 116 75.9
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 2.5e-44 184.5 242 40.9
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.6e-27 128.6 170 38.8
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 1.8e-21 108.6 64 78.1
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 6.5e-16 90.1 165 40.6
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 2.6e-09 68.2 126 36.5
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-07 60.8 39 66.7
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 2.7e-06 58.2 58 48.3


User provided reference genes

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