Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 2.4e-110 402.1 199 100.0
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 4.5e-96 354.8 199 86.4
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 6.4e-95 350.9 199 84.9
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 3.1e-89 332.0 190 83.2
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 4.0e-81 305.1 201 73.6
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 6.9e-81 304.3 201 74.6
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.2e-79 299.3 202 71.8
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 2.9e-79 298.9 202 70.8
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 4.2e-78 295.0 203 70.4
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 5.5e-78 294.7 204 69.1
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 1.6e-77 293.1 201 68.7
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 2.1e-77 292.7 204 69.1
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 2.1e-77 292.7 204 70.1
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 2.7e-77 292.4 202 68.3
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.5e-77 292.0 202 69.8
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 3.5e-77 292.0 201 67.2
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 3.5e-77 292.0 202 68.3
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 3.5e-77 292.0 204 69.6
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 4.6e-77 291.6 202 69.3
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 6.0e-77 291.2 201 67.7
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 1.0e-76 290.4 201 66.2
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 1.3e-76 290.0 201 67.2
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.3e-76 290.0 201 67.2
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 1.8e-76 289.7 203 69.0
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 2.3e-76 289.3 204 68.1
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 3.0e-76 288.9 201 67.7
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 3.9e-76 288.5 205 68.3
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 6.7e-76 287.7 202 68.8
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 6.7e-76 287.7 204 67.6
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 8.7e-76 287.3 202 69.8
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 8.7e-76 287.3 204 67.6
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 1.1e-75 287.0 199 69.8
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.1e-75 287.0 204 67.6
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 1.9e-75 286.2 202 66.8
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.5e-75 285.8 201 66.2
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 4.3e-75 285.0 199 68.3
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 5.7e-75 284.6 204 66.7
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 5.7e-75 284.6 203 69.5
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 7.4e-75 284.3 200 68.0
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 7.4e-75 284.3 202 69.3
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 9.6e-75 283.9 202 68.3
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 9.6e-75 283.9 203 69.0
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 1.3e-74 283.5 205 67.8
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 1.6e-74 283.1 202 64.9
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 2.1e-74 282.7 202 67.8
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 2.1e-74 282.7 202 67.8
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 2.1e-74 282.7 207 71.0
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 2.8e-74 282.3 202 64.4
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 3.7e-74 282.0 203 69.0
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 4.8e-74 281.6 202 64.9
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 6.3e-74 281.2 203 67.0
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 8.2e-74 280.8 202 68.3
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.1e-73 280.4 202 67.8
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 1.8e-73 279.6 203 66.0
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 1.8e-73 279.6 203 66.5
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 1.8e-73 279.6 203 66.5
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 2.4e-73 279.3 202 69.3
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 2.4e-73 279.3 203 71.4
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 2.4e-73 279.3 203 68.0
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 4.1e-73 278.5 203 65.5
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 4.1e-73 278.5 199 66.8
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 4.1e-73 278.5 203 67.0
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 5.3e-73 278.1 201 66.7
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 6.9e-73 277.7 203 65.5
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 9.0e-73 277.3 225 62.2
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 9.0e-73 277.3 200 65.5
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 9.0e-73 277.3 200 66.0
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 1.5e-72 276.6 203 66.0
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 2.0e-72 276.2 203 66.0
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 2.0e-72 276.2 202 67.8
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 2.0e-72 276.2 203 65.5
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 2.0e-72 276.2 202 66.8
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 2.6e-72 275.8 202 65.8
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 3.4e-72 275.4 203 66.0
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 4.5e-72 275.0 202 68.3
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 5.9e-72 274.6 203 66.0
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 5.9e-72 274.6 203 66.0
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 5.9e-72 274.6 203 66.0
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 5.9e-72 274.6 201 66.7
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 5.9e-72 274.6 203 70.0
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 5.9e-72 274.6 201 65.7
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 7.6e-72 274.2 203 66.0
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 7.6e-72 274.2 201 65.2
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 1.0e-71 273.9 202 66.8
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 1.0e-71 273.9 202 66.8
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 1.0e-71 273.9 201 65.2
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 1.3e-71 273.5 198 69.2
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 1.3e-71 273.5 203 65.0
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 2.2e-71 272.7 203 65.0
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 2.2e-71 272.7 203 65.5
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 2.2e-71 272.7 204 67.2
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 2.2e-71 272.7 198 65.7
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 3.8e-71 271.9 203 64.0
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 3.8e-71 271.9 202 65.8
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 3.8e-71 271.9 203 64.0
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 5.0e-71 271.6 203 64.5
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 6.5e-71 271.2 203 64.0
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 6.5e-71 271.2 201 63.7
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 8.5e-71 270.8 203 65.5
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 8.5e-71 270.8 201 64.7
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 8.5e-71 270.8 201 63.2
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 2.5e-70 269.2 203 68.5
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 5.5e-70 268.1 203 63.1
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 5.5e-70 268.1 201 65.2
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 1.2e-69 266.9 207 63.3
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 1.2e-69 266.9 255 55.7
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 4.6e-69 265.0 199 64.3
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 6.1e-69 264.6 202 63.9
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 3.0e-68 262.3 213 61.0
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 3.0e-68 262.3 192 66.1
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 6.7e-68 261.2 196 66.8
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 2.5e-67 259.2 201 64.7
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 2.2e-66 256.1 207 59.9
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 2.4e-65 252.7 202 62.4
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.4e-64 248.8 203 62.6
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 3.8e-63 245.4 198 59.6
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 1.9e-62 243.0 207 58.5
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.4e-57 226.9 132 83.3
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 4.1e-57 225.3 201 56.2
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 4.2e-54 215.3 202 54.5
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 3.0e-52 209.1 210 52.4
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 3.9e-52 208.8 151 66.9
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 3.3e-51 205.7 201 50.7
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 7.4e-51 204.5 143 72.0
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 6.3e-50 201.4 208 51.0
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 8.2e-50 201.1 137 67.9
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 5.3e-49 198.4 144 63.2
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.6e-48 196.8 138 69.6
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 1.6e-45 186.8 203 52.7
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.2e-43 180.6 146 61.0
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 2.2e-42 176.4 196 47.4
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 2.9e-39 166.0 167 52.7
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 7.2e-30 134.8 181 45.9
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 4.7e-29 132.1 193 38.9
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 3.1e-25 119.4 193 38.9
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 4.1e-25 119.0 127 48.8
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 4.1e-25 119.0 75 69.3
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 9.2e-25 117.9 133 50.4
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 2.0e-24 116.7 198 38.9
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 8.0e-21 104.8 100 54.0
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 9.8e-19 97.8 69 63.8
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 5.4e-17 92.0 68 66.2
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.7e-16 89.7 66 66.7
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 5.6e-14 82.0 50 74.0
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 9.5e-14 81.3 63 63.5
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 1.4e-09 67.4 71 49.3
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 4.1e-09 65.9 42 66.7
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.0e-07 61.2 48 58.3
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.0e-07 61.2 48 58.3
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 2.3e-07 60.1 69 40.6
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.0e-07 59.7 63 49.2


User provided reference genes

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