Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 5.0e-163 577.8 309 100.0
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 7.8e-140 500.7 310 86.1
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.6e-137 493.0 310 84.5
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 4.7e-137 491.5 310 85.2
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 2.4e-125 452.6 310 76.5
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 5.4e-125 451.4 312 76.9
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 7.1e-125 451.1 310 76.1
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 7.1e-125 451.1 309 76.7
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 9.3e-125 450.7 310 76.1
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 1.0e-123 447.2 309 75.1
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 1.3e-123 446.8 309 76.1
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 1.3e-123 446.8 310 75.8
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.3e-123 446.0 310 74.8
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 3.0e-123 445.7 310 75.5
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 3.0e-123 445.7 309 74.8
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 6.6e-123 444.5 318 75.8
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 6.6e-123 444.5 310 75.8
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 1.1e-122 443.7 309 75.4
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 2.5e-122 442.6 318 75.5
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 2.5e-122 442.6 310 75.2
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 3.3e-122 442.2 310 74.8
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 7.3e-122 441.0 310 75.5
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 9.6e-122 440.7 318 73.6
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 1.3e-121 440.3 317 75.1
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 1.3e-121 440.3 317 75.1
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 1.6e-121 439.9 310 74.8
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 1.6e-121 439.9 310 74.8
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 2.1e-121 439.5 318 73.6
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 2.1e-121 439.5 310 74.2
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 3.6e-121 438.7 310 74.5
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 4.8e-121 438.3 309 74.4
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 1.8e-120 436.4 316 74.1
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 2.4e-120 436.0 310 74.8
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 3.1e-120 435.6 310 74.5
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 6.9e-120 434.5 310 73.5
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 9.0e-120 434.1 310 73.5
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 9.0e-120 434.1 310 73.9
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 9.0e-120 434.1 311 74.3
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 1.5e-119 433.3 318 73.9
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.5e-119 433.3 310 73.2
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 2.6e-119 432.6 310 72.9
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 3.4e-119 432.2 310 73.5
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 5.8e-119 431.4 318 73.9
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 1.3e-118 430.3 310 72.6
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.3e-118 430.3 318 74.2
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 1.7e-118 429.9 318 73.9
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 2.2e-118 429.5 318 73.3
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 2.2e-118 429.5 318 73.3
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 2.9e-118 429.1 262 85.9
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 3.8e-118 428.7 310 75.8
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 3.8e-118 428.7 319 73.4
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 3.8e-118 428.7 310 73.2
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 3.8e-118 428.7 318 73.3
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 6.4e-118 427.9 318 73.3
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 8.4e-118 427.6 310 72.6
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.4e-117 426.8 310 72.6
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.4e-117 426.8 310 72.9
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 1.9e-117 426.4 318 72.6
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 1.9e-117 426.4 310 71.6
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.9e-117 426.4 318 73.6
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 2.4e-117 426.0 318 73.3
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 4.2e-117 425.2 309 72.2
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 5.4e-117 424.9 310 73.2
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 1.2e-116 423.7 318 73.6
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 1.6e-116 423.3 310 73.2
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.6e-116 423.3 310 72.3
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 3.5e-116 422.2 311 72.3
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 4.6e-116 421.8 310 71.9
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 4.6e-116 421.8 310 71.6
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 6.0e-116 421.4 319 71.5
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 7.9e-116 421.0 310 71.6
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 7.9e-116 421.0 362 64.6
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 1.3e-115 420.2 310 71.6
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 8.7e-115 417.5 310 72.6
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 1.5e-114 416.8 311 71.1
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 1.9e-114 416.4 318 71.7
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 2.5e-114 416.0 310 71.3
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 4.3e-114 415.2 311 71.1
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 5.6e-114 414.8 312 70.5
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 9.6e-114 414.1 311 71.4
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 3.6e-113 412.1 311 71.1
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 1.4e-112 410.2 318 70.4
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 5.8e-111 404.8 310 70.6
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 2.9e-110 402.5 310 71.0
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.9e-110 402.5 277 75.5
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 8.4e-110 401.0 307 70.4
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 1.9e-109 399.8 311 68.2
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 3.2e-109 399.1 311 71.4
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 4.2e-109 398.7 311 67.5
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 4.2e-109 398.7 312 67.9
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 1.2e-108 397.1 295 71.9
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 2.7e-108 396.0 311 71.1
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 6.0e-108 394.8 294 71.4
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 1.3e-107 393.7 294 71.4
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 3.0e-107 392.5 294 71.1
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 6.7e-107 391.3 312 67.9
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 2.5e-106 389.4 285 71.9
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 2.1e-105 386.3 262 77.5
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 7.6e-103 377.9 286 70.6
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 1.3e-102 377.1 279 71.7
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.3e-102 377.1 281 73.3
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.7e-102 376.7 319 67.7
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 2.2e-102 376.3 286 69.9
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 3.8e-102 375.6 316 64.9
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.2e-100 370.5 315 64.4
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.6e-100 370.2 315 64.1
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 2.1e-100 369.8 313 65.8
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 3.5e-100 369.0 321 63.6
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 1.9e-98 363.2 312 63.5
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.4e-96 356.3 256 73.4
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 5.3e-96 355.1 256 73.8
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 5.8e-95 351.7 262 71.0
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 6.5e-94 348.2 309 62.8
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 1.4e-93 347.1 276 68.8
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 5.7e-90 335.1 315 61.9
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 2.8e-89 332.8 309 62.5
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 1.2e-87 327.4 256 68.8
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 7.7e-87 324.7 314 57.3
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.4e-83 313.9 310 59.0
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 4.5e-79 298.9 228 70.2
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 1.1e-77 294.3 242 65.7
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.1e-77 294.3 310 55.5
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.4e-77 293.9 221 68.8
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 9.1e-72 274.6 740 31.8
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.8e-67 260.4 391 47.8
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 7.5e-66 255.0 320 46.2
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 9.7e-66 254.6 315 47.3
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 1.6e-63 247.3 314 49.4
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 4.1e-56 222.6 290 45.9
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 4.1e-56 222.6 178 71.3
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 2.0e-55 220.3 185 67.0
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 9.8e-50 201.4 253 51.4
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 8.6e-46 188.3 157 68.2
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 5.6e-45 185.7 150 70.0
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 4.0e-43 179.5 120 82.5
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 3.7e-41 172.9 121 77.7
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 4.6e-39 166.0 141 66.7
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 2.8e-36 156.8 254 44.1
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 6.8e-35 152.1 244 41.4
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 3.5e-31 139.8 121 58.7
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 8.6e-30 135.2 127 63.0
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 3.3e-29 133.3 315 31.4
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.2e-28 131.3 91 74.7
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.1e-27 126.7 110 60.9
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.4e-26 123.2 161 51.6
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 8.3e-25 118.6 93 65.6
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 1.6e-23 114.4 95 61.1
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 3.6e-20 103.2 89 57.3
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.3e-19 100.5 100 60.0
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 5.4e-16 89.4 62 79.0
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.2e-15 88.2 84 56.0
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.0e-14 85.1 67 62.7
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 6.6e-14 82.4 394 25.1
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 1.9e-08 64.3 125 37.6
HanXRQChr16g0528961 Helianthus annuus HOM05D004764 ORTHO05D005580 1.3e-06 58.2 90 41.1


User provided reference genes

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