Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 6.6e-76 287.3 151 100.0
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 6.7e-36 154.5 107 76.6
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 3.7e-34 148.7 105 75.2
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 1.8e-28 129.8 146 54.8
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 1.5e-27 126.7 95 68.4
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 2.8e-26 122.5 91 64.8
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 8.2e-26 120.9 95 60.0
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 1.8e-25 119.8 94 59.6
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 3.1e-25 119.0 116 54.3
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 4.1e-25 118.6 78 70.5
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 4.1e-25 118.6 79 70.9
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 5.3e-25 118.2 103 57.3
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 5.3e-25 118.2 124 54.8
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 1.5e-24 116.7 89 64.0
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 2.6e-24 115.9 82 63.4
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 3.4e-24 115.5 79 67.1
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 3.4e-24 115.5 79 67.1
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 3.4e-24 115.5 76 72.4
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 3.4e-24 115.5 76 72.4
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 3.4e-24 115.5 87 65.5
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 3.4e-24 115.5 73 75.3
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 7.7e-24 114.4 100 57.0
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 1.0e-23 114.0 73 72.6
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.0e-23 114.0 100 57.0
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.0e-23 114.0 100 57.0
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 1.7e-23 113.2 76 69.7
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 1.7e-23 113.2 100 56.0
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.2e-23 112.8 76 71.1
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.2e-23 112.8 76 71.1
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 2.9e-23 112.5 133 47.4
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 2.9e-23 112.5 82 65.9
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 2.9e-23 112.5 92 62.0
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 2.9e-23 112.5 76 69.7
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 3.8e-23 112.1 76 71.1
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 5.0e-23 111.7 100 57.0
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 5.0e-23 111.7 76 69.7
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 5.0e-23 111.7 76 69.7
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 5.0e-23 111.7 76 71.1
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 5.0e-23 111.7 117 50.4
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 6.5e-23 111.3 109 57.8
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 6.5e-23 111.3 111 49.5
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 8.5e-23 110.9 79 65.8
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 8.5e-23 110.9 79 65.8
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 1.4e-22 110.2 105 54.3
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 1.4e-22 110.2 122 50.0
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.4e-22 110.2 81 63.0
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 1.9e-22 109.8 120 49.2
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 1.9e-22 109.8 96 57.3
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 1.9e-22 109.8 110 50.0
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 1.9e-22 109.8 127 48.0
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 2.5e-22 109.4 82 62.2
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.5e-22 109.4 76 69.7
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 3.2e-22 109.0 81 61.7
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 4.2e-22 108.6 82 63.4
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 4.2e-22 108.6 79 60.8
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 5.5e-22 108.2 92 56.5
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 5.5e-22 108.2 113 52.2
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 5.5e-22 108.2 81 61.7
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 7.2e-22 107.8 90 57.8
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 9.4e-22 107.5 76 63.2
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 9.4e-22 107.5 92 56.5
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 9.4e-22 107.5 78 62.8
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 1.2e-21 107.1 75 68.0
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 1.6e-21 106.7 121 49.6
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 1.6e-21 106.7 120 47.5
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 1.6e-21 106.7 107 50.5
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 2.1e-21 106.3 87 58.6
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 2.7e-21 105.9 76 64.5
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 2.7e-21 105.9 109 54.1
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 2.7e-21 105.9 90 57.8
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 2.7e-21 105.9 100 56.0
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 6.1e-21 104.8 126 46.0
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 7.9e-21 104.4 103 50.5
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 7.9e-21 104.4 75 64.0
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 7.9e-21 104.4 87 58.6
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 1.0e-20 104.0 79 60.8
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 1.0e-20 104.0 85 57.6
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 1.4e-20 103.6 76 61.8
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 1.8e-20 103.2 79 59.5
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 3.0e-20 102.4 78 60.3
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 3.0e-20 102.4 108 52.8
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 3.9e-20 102.1 75 61.3
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 6.7e-20 101.3 106 49.1
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 6.7e-20 101.3 129 41.9
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 8.8e-20 100.9 105 48.6
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 8.8e-20 100.9 67 70.1
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 1.1e-19 100.5 95 50.5
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 1.5e-19 100.1 109 45.9
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 2.6e-19 99.4 79 57.0
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 3.3e-19 99.0 79 55.7
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 4.4e-19 98.6 105 46.7
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 4.4e-19 98.6 105 46.7
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 4.4e-19 98.6 105 46.7
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 5.7e-19 98.2 106 49.1
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 5.7e-19 98.2 106 49.1
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 7.4e-19 97.8 76 57.9
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 7.4e-19 97.8 76 57.9
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 9.7e-19 97.4 76 57.9
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 1.3e-18 97.1 76 57.9
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 1.3e-18 97.1 76 57.9
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 1.3e-18 97.1 79 58.2
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 1.7e-18 96.7 75 58.7
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 2.2e-18 96.3 75 57.3
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 4.8e-18 95.1 110 45.5
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 2.4e-17 92.8 77 55.8
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 4.1e-17 92.0 64 70.3
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 2.6e-16 89.4 69 59.4
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 4.5e-16 88.6 64 68.8
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 2.9e-15 85.9 73 53.4
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 5.0e-15 85.1 66 62.1
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 1.9e-14 83.2 101 47.5
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 5.5e-14 81.6 112 43.8
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 7.2e-14 81.3 93 46.2
SMO329G0027 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 2.7e-13 79.3 73 50.7
SMO358G0504 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 2.7e-13 79.3 73 50.7
Hund13808 Selenicereus undatus HOM05D005411 ORTHO05D006463 4.7e-13 78.6 65 70.8
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 5.2e-12 75.1 70 51.4
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 1.5e-11 73.6 66 56.1
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 6.3e-10 68.2 71 43.7
Sabra14G0123800 Salix brachista HOM05D005411 ORTHO05D006463 4.1e-09 65.5 84 45.2
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 4.1e-09 65.5 84 45.2
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 4.1e-09 65.5 84 45.2
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 5.3e-09 65.1 57 54.4
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 1.2e-08 63.9 106 34.9
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 1.6e-08 63.5 97 38.1
Sabra18G0123000 Salix brachista HOM05D005411 ORTHO05D006463 1.6e-08 63.5 84 44.0
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 5.9e-08 61.6 88 39.8
Eucgr.H02258 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.0e-07 60.8 37 86.5
COL.COLO4_34468 Corchorus olitorius HOM05D005411 ORTHO05D006463 1.3e-07 60.5 52 65.4
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 3.2e-06 55.8 52 51.9
CSS0004409 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 4.2e-06 55.5 39 69.2
CSS0027281 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 4.2e-06 55.5 39 69.2
PGSC0003DMG402012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 5.5e-06 55.1 89 42.7
Sabra17G0034500 Salix brachista HOM05D005411 ORTHO05D006463 9.4e-06 54.3 110 37.3


User provided reference genes

Program Settings