Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 6.3e-178 627.5 350 100.0
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 5.6e-126 454.9 333 77.2
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 1.1e-113 414.1 363 68.6
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 7.5e-107 391.3 350 66.6
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 9.9e-99 364.4 352 61.4
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 1.0e-95 354.4 351 59.8
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 1.5e-94 350.5 354 61.0
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 2.5e-94 349.7 353 60.3
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 9.6e-94 347.8 352 61.9
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 1.2e-93 347.4 352 61.1
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.2e-93 347.4 353 60.1
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 3.6e-93 345.9 353 59.8
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 4.7e-93 345.5 353 60.1
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 1.8e-92 343.6 354 60.2
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 3.1e-92 342.8 353 59.2
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 3.1e-92 342.8 353 59.5
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 5.3e-92 342.0 352 58.8
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 5.3e-92 342.0 350 60.3
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 9.9e-91 337.8 352 58.2
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 1.3e-90 337.4 354 59.0
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.7e-90 337.0 353 59.8
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 2.9e-90 336.3 350 60.6
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.9e-90 336.3 353 59.8
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 6.4e-90 335.1 349 59.6
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 6.4e-90 335.1 352 59.1
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 1.9e-89 333.6 353 57.5
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 1.9e-89 333.6 352 59.7
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 2.4e-89 333.2 353 58.4
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 3.2e-89 332.8 352 57.4
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 4.2e-89 332.4 352 58.0
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 4.2e-89 332.4 348 58.0
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 4.2e-89 332.4 355 58.0
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 5.4e-89 332.0 348 57.8
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 5.4e-89 332.0 356 58.1
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 7.1e-89 331.6 352 58.0
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 9.3e-89 331.3 355 59.2
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 4.6e-88 328.9 349 57.3
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 5.1e-87 325.5 352 56.2
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 6.6e-87 325.1 353 60.6
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 8.7e-87 324.7 351 59.3
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 1.1e-86 324.3 349 57.0
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 1.1e-86 324.3 353 57.8
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 1.1e-86 324.3 352 57.1
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 1.5e-86 323.9 351 57.0
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 5.6e-86 322.0 349 56.7
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 7.3e-86 321.6 359 56.0
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 9.6e-86 321.2 350 57.1
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 9.6e-86 321.2 350 57.1
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 9.6e-86 321.2 351 56.4
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 2.1e-85 320.1 355 56.9
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 2.8e-85 319.7 354 56.5
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 2.8e-85 319.7 351 57.0
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 4.8e-85 318.9 351 59.5
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 4.8e-85 318.9 356 57.3
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 4.8e-85 318.9 350 58.3
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 4.8e-85 318.9 364 58.2
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 6.2e-85 318.5 351 58.4
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 6.2e-85 318.5 349 56.2
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 1.1e-84 317.8 349 57.3
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 1.8e-84 317.0 353 57.5
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 1.8e-84 317.0 342 57.6
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 1.8e-84 317.0 350 56.0
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 3.1e-84 316.2 352 56.5
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 4.0e-84 315.8 351 56.4
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 5.3e-84 315.5 352 57.1
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 9.0e-84 314.7 359 56.0
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 9.0e-84 314.7 353 58.4
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 1.2e-83 314.3 359 55.7
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 2.6e-83 313.2 352 55.4
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 1.3e-82 310.8 367 55.6
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.7e-82 310.5 352 56.0
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.7e-82 310.5 352 56.0
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 2.4e-81 306.6 356 55.1
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 5.4e-81 305.4 361 54.0
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 2.7e-80 303.1 373 55.0
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 2.7e-80 303.1 352 55.7
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 7.9e-80 301.6 353 55.5
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 2.3e-79 300.1 353 55.5
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 6.7e-79 298.5 348 54.6
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.1e-78 297.7 352 54.8
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.3e-78 296.2 357 55.7
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.3e-78 296.2 357 55.7
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 2.1e-77 293.5 352 55.4
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 2.1e-77 293.5 292 60.3
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 2.8e-77 293.1 350 55.7
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 4.8e-77 292.4 336 54.2
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 9.9e-75 284.6 351 53.0
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 6.4e-74 282.0 303 58.4
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 5.5e-73 278.9 339 54.0
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 5.5e-73 278.9 408 49.5
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 1.0e-71 274.6 346 51.7
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 6.7e-71 271.9 352 53.7
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 8.7e-71 271.6 379 48.0
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 1.1e-70 271.2 423 45.2
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 2.9e-66 256.5 349 48.7
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.4e-65 254.2 251 61.0
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 1.9e-62 243.8 233 64.4
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 1.2e-59 234.6 235 62.1
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 1.0e-58 231.5 350 48.0
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 2.1e-56 223.8 332 46.7
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 2.3e-55 220.3 235 57.4
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 4.8e-53 212.6 201 62.2
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.4e-49 201.1 354 45.8
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 2.1e-48 197.2 227 54.2
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 8.8e-47 191.8 140 73.6
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 7.4e-46 188.7 233 54.9
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 8.2e-45 185.3 197 57.4
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 1.2e-40 171.4 315 42.2
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 2.7e-40 170.2 180 58.9
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 2.4e-36 157.1 295 37.6
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 1.2e-35 154.8 201 52.2
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 1.9e-33 147.5 114 69.3
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 1.2e-32 144.8 135 61.5
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 6.8e-31 139.0 96 70.8
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 3.1e-28 130.2 379 34.8
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 8.5e-26 122.1 232 40.9
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 1.9e-25 120.9 305 34.8
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 8.0e-24 115.5 231 42.9
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 2.8e-21 107.1 369 31.2
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 5.9e-19 99.4 291 35.4
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 2.9e-18 97.1 94 56.4
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 4.7e-16 89.7 101 50.5
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 5.2e-15 86.3 326 27.6
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 6.3e-13 79.3 110 41.8
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 8.3e-13 79.0 72 62.5
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 6.6e-10 69.3 123 39.0
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 8.6e-10 68.9 79 55.7
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 1.0e-07 62.0 46 69.6
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 3.4e-06 57.0 87 47.1
Sopen03g009730 Solanum pennellii HOM05D005714 ORTHO05D006812 9.8e-06 55.5 85 50.6


User provided reference genes

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