Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 6.3e-172 607.4 331 100.0
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 9.0e-110 401.0 331 69.5
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.0e-73 279.6 326 56.7
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 2.0e-72 276.9 331 52.9
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 8.2e-71 271.6 333 52.6
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 3.1e-70 269.6 268 62.3
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 1.2e-69 267.7 274 59.5
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.0e-68 264.6 311 56.3
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 2.2e-68 263.5 312 57.1
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 3.8e-68 262.7 256 58.6
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 1.1e-67 261.2 275 57.5
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.1e-67 261.2 285 55.8
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 3.2e-67 259.6 251 61.8
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 4.2e-67 259.2 256 58.6
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 5.5e-67 258.8 302 54.3
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 5.5e-67 258.8 282 56.7
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 7.2e-67 258.5 333 50.5
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 9.4e-67 258.1 325 56.0
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 1.2e-66 257.7 317 52.7
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 1.6e-66 257.3 240 62.5
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 2.1e-66 256.9 272 58.8
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.7e-66 256.5 274 55.8
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 2.7e-66 256.5 274 55.8
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 2.7e-66 256.5 333 49.5
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 4.7e-66 255.8 245 60.0
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 6.1e-66 255.4 333 49.5
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.4e-65 254.2 332 51.8
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 5.2e-65 252.3 347 49.9
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 1.2e-64 251.1 274 54.0
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 2.0e-64 250.4 333 50.2
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 2.0e-64 250.4 333 50.2
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 2.0e-64 250.4 323 54.2
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 4.4e-64 249.2 325 55.1
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 5.7e-64 248.8 319 50.5
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 7.5e-64 248.4 325 49.5
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 9.8e-64 248.1 325 47.4
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 1.3e-63 247.7 332 47.6
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 1.3e-63 247.7 333 50.5
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 1.7e-63 247.3 275 54.5
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 1.7e-63 247.3 275 56.0
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.2e-63 246.9 339 50.1
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 2.2e-63 246.9 278 55.0
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 2.8e-63 246.5 280 54.3
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 2.8e-63 246.5 335 47.5
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 8.3e-63 245.0 254 57.5
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 1.1e-62 244.6 335 50.7
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 1.4e-62 244.2 281 55.5
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 1.8e-62 243.8 245 58.4
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 1.8e-62 243.8 331 48.0
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 3.1e-62 243.0 242 56.2
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 4.1e-62 242.7 240 58.3
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 7.0e-62 241.9 311 50.5
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 7.0e-62 241.9 319 51.4
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 1.6e-61 240.7 285 54.7
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 2.0e-61 240.4 281 54.4
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 3.5e-61 239.6 341 47.2
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 5.9e-61 238.8 331 48.9
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 1.7e-60 237.3 260 55.4
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 5.0e-60 235.7 244 58.6
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 6.5e-60 235.3 288 54.9
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 6.5e-60 235.3 245 58.4
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 6.5e-60 235.3 245 58.4
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 6.5e-60 235.3 261 53.6
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 8.5e-60 235.0 260 56.2
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.1e-59 234.6 325 47.7
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.5e-59 234.2 330 48.2
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 2.5e-59 233.4 245 58.4
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 3.2e-59 233.0 240 57.5
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 4.2e-59 232.6 245 58.0
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 5.5e-59 232.3 278 52.2
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 3.6e-58 229.6 361 43.5
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 6.1e-58 228.8 326 46.9
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 8.0e-58 228.4 278 51.1
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.0e-57 228.0 278 51.1
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 1.0e-57 228.0 328 48.8
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.0e-57 228.0 273 53.5
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 1.0e-57 228.0 329 46.5
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 1.4e-57 227.6 325 45.2
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 1.8e-57 227.3 282 51.1
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 1.8e-57 227.3 325 45.2
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 4.0e-57 226.1 320 48.4
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.2e-56 224.6 273 52.4
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.5e-56 224.2 314 48.1
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 2.0e-56 223.8 223 58.3
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 3.4e-56 223.0 281 50.5
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 4.4e-56 222.6 267 53.2
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 7.5e-56 221.9 257 53.7
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 9.8e-56 221.5 258 53.1
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 2.8e-55 219.9 218 60.1
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 8.3e-55 218.4 322 46.0
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 1.1e-54 218.0 248 54.8
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 2.4e-54 216.9 328 43.9
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 5.4e-54 215.7 260 54.2
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 3.5e-53 213.0 321 47.7
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 4.5e-53 212.6 188 62.8
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 3.8e-52 209.5 324 45.7
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 8.6e-52 208.4 325 49.8
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.1e-51 208.0 158 70.9
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 4.3e-51 206.1 275 48.4
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 2.8e-50 203.4 324 45.7
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 2.8e-50 203.4 328 45.1
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 1.4e-49 201.1 240 53.3
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 2.3e-49 200.3 242 51.2
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 2.3e-49 200.3 242 51.2
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 5.2e-49 199.1 247 53.8
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 6.8e-49 198.7 242 52.5
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 8.9e-49 198.4 240 52.9
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 2.6e-48 196.8 239 53.6
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 4.4e-48 196.1 239 53.6
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 7.5e-48 195.3 267 51.3
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 7.5e-48 195.3 277 48.0
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 1.7e-47 194.1 244 52.5
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.2e-47 193.7 272 48.2
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 2.9e-47 193.4 269 48.0
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 2.9e-47 193.4 269 48.0
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 4.9e-47 192.6 239 54.0
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 4.9e-47 192.6 152 69.1
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 6.4e-47 192.2 270 50.7
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 6.4e-47 192.2 269 48.3
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 8.3e-47 191.8 329 42.9
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 1.1e-46 191.4 241 55.2
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.8e-46 190.7 239 52.7
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.8e-46 190.7 152 68.4
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 3.2e-46 189.9 246 52.0
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 3.2e-46 189.9 247 51.8
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 5.4e-46 189.1 239 53.1
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 9.2e-46 188.3 238 51.3
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 9.2e-46 188.3 238 51.3
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 9.2e-46 188.3 289 43.9
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.6e-45 187.6 230 54.8
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 2.0e-45 187.2 327 41.0
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 1.3e-44 184.5 240 52.9
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 2.3e-44 183.7 353 42.5
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 3.9e-44 183.0 232 50.4
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 8.6e-44 181.8 326 42.9
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 9.5e-43 178.3 242 48.3
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 2.1e-42 177.2 260 45.8
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.4e-41 174.5 266 44.4
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 2.6e-40 170.2 321 41.1
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 9.8e-40 168.3 319 41.1
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 3.7e-39 166.4 219 49.3
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 8.3e-39 165.2 248 50.4
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 1.4e-38 164.5 267 42.3
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 1.1e-35 154.8 231 47.6
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 3.6e-34 149.8 316 37.7
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 4.7e-34 149.4 265 41.5
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 4.0e-33 146.4 274 40.5
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 5.2e-33 146.0 274 40.5
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 6.8e-33 145.6 110 69.1
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 5.8e-32 142.5 218 45.0
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 7.5e-32 142.1 344 35.2
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 2.9e-31 140.2 273 39.9
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 8.3e-31 138.7 205 47.3
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 1.1e-30 138.3 112 68.8
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 3.2e-30 136.7 142 54.2
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 1.2e-26 124.8 227 39.2
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.8e-25 120.9 254 37.0
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 2.3e-25 120.6 206 40.8
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 2.3e-25 120.6 254 37.8
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 2.1e-18 97.4 79 62.0
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 3.4e-16 90.1 61 70.5
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 1.9e-14 84.3 64 75.0


User provided reference genes

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