Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 1.2e-115 419.9 206 100.0
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 1.6e-69 266.5 232 64.2
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 1.7e-66 256.5 228 64.0
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 3.2e-65 252.3 239 58.6
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.6e-62 242.7 237 56.5
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 2.8e-61 239.2 237 56.5
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 3.7e-61 238.8 244 53.7
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 6.3e-61 238.0 237 55.3
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.4e-60 236.9 238 55.0
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 1.4e-60 236.9 238 55.0
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 1.4e-60 236.9 189 63.0
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.8e-60 236.5 186 65.6
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.4e-60 236.1 238 55.0
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 1.5e-59 233.4 187 63.6
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.0e-59 233.0 233 55.4
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 5.9e-59 231.5 214 57.0
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 7.7e-59 231.1 214 59.8
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 7.7e-59 231.1 151 79.5
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 7.7e-59 231.1 151 78.8
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 7.7e-59 231.1 241 54.4
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 1.0e-58 230.7 187 62.0
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.0e-58 230.7 179 65.4
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 3.8e-58 228.8 232 54.7
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 5.0e-58 228.4 231 55.0
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 8.5e-58 227.6 187 62.6
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 7.2e-57 224.6 176 65.3
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 9.4e-57 224.2 235 52.8
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 1.2e-56 223.8 161 70.2
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.6e-56 223.4 182 64.3
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 1.6e-56 223.4 234 53.0
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 2.1e-56 223.0 227 54.2
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 2.1e-56 223.0 191 59.2
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 2.7e-56 222.6 182 63.7
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 2.7e-56 222.6 179 62.0
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 3.6e-56 222.2 234 53.0
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 3.6e-56 222.2 240 50.8
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 3.6e-56 222.2 186 62.4
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 4.7e-56 221.9 199 59.3
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 4.7e-56 221.9 179 62.0
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.4e-55 220.3 187 61.5
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.4e-55 220.3 177 63.8
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 1.8e-55 219.9 176 65.3
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 1.8e-55 219.9 181 62.4
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.3e-55 219.5 177 63.8
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 3.0e-55 219.2 179 63.1
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 5.2e-55 218.4 222 57.2
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 5.2e-55 218.4 182 61.5
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 5.2e-55 218.4 177 63.8
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 6.7e-55 218.0 210 55.7
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 6.7e-55 218.0 182 62.6
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 8.8e-55 217.6 226 54.4
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.8e-55 217.6 161 68.3
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 1.1e-54 217.2 237 51.1
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 2.0e-54 216.5 183 61.7
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 2.0e-54 216.5 235 49.8
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 5.7e-54 214.9 206 57.3
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.7e-53 213.4 179 60.3
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 1.7e-53 213.4 177 64.4
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.2e-53 213.0 182 62.6
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 3.7e-53 212.2 233 49.8
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 3.7e-53 212.2 187 58.3
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 8.2e-53 211.1 201 56.2
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.4e-52 209.5 161 65.8
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 4.1e-52 208.8 188 55.3
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 4.1e-52 208.8 188 57.4
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.3e-52 208.4 152 69.7
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 7.0e-52 208.0 216 53.7
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 9.1e-52 207.6 179 59.8
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 1.2e-51 207.2 181 59.1
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 1.2e-51 207.2 185 57.3
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 1.2e-51 207.2 182 58.2
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 1.2e-51 207.2 178 62.9
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 1.6e-51 206.8 176 58.0
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 2.6e-51 206.1 185 58.9
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 2.6e-51 206.1 185 58.9
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 3.5e-51 205.7 145 71.7
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 4.5e-51 205.3 182 57.1
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 7.7e-51 204.5 188 58.5
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 7.7e-51 204.5 188 58.5
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 7.7e-51 204.5 182 60.4
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 7.7e-51 204.5 192 58.3
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 1.0e-50 204.1 188 58.5
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.3e-50 203.8 149 69.8
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 1.7e-50 203.4 213 50.7
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 2.9e-50 202.6 182 59.3
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 2.9e-50 202.6 168 64.9
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 2.9e-50 202.6 226 50.4
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.9e-50 202.6 186 53.8
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 3.8e-50 202.2 191 57.1
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 5.0e-50 201.8 150 65.3
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 6.5e-50 201.4 213 54.0
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 1.1e-49 200.7 181 55.2
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 1.1e-49 200.7 181 55.2
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.1e-49 200.7 181 56.4
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 1.9e-49 199.9 178 59.0
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 2.5e-49 199.5 212 51.9
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 3.2e-49 199.1 188 56.9
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 4.2e-49 198.7 184 56.0
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 4.2e-49 198.7 151 67.5
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 4.2e-49 198.7 191 55.0
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 4.2e-49 198.7 181 55.2
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 7.2e-49 198.0 181 57.5
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 9.4e-49 197.6 145 69.7
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 1.6e-48 196.8 187 54.5
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 2.7e-48 196.1 134 73.1
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 2.7e-48 196.1 181 55.2
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 4.7e-48 195.3 146 67.1
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 1.0e-47 194.1 218 49.5
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.4e-47 193.7 158 64.6
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 5.2e-47 191.8 181 54.1
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 6.7e-47 191.4 156 61.5
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 1.5e-46 190.3 143 65.7
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 2.6e-46 189.5 175 57.7
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 4.4e-46 188.7 171 60.2
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 5.7e-46 188.3 215 49.3
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.7e-45 186.8 210 48.6
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 2.2e-45 186.4 145 62.8
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 4.8e-45 185.3 139 65.5
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 1.8e-44 183.3 145 64.1
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 1.2e-43 180.6 145 62.8
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 5.0e-42 175.3 142 59.2
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 8.5e-42 174.5 216 50.0
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 9.4e-41 171.0 102 78.4
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.6e-40 170.2 145 56.6
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 6.1e-40 168.3 133 63.2
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 8.0e-40 167.9 155 54.8
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 8.0e-40 167.9 191 48.2
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 1.0e-39 167.5 120 70.0
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.8e-39 166.8 182 50.5
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 2.3e-39 166.4 103 77.7
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.5e-38 163.7 165 52.7
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 8.3e-37 157.9 137 56.2
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.4e-36 156.4 139 54.7
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 5.4e-36 155.2 172 52.9
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 9.1e-36 154.5 140 53.6
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 9.5e-33 144.4 139 48.9
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 1.2e-27 127.5 238 37.8
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 1.3e-26 124.0 232 37.1
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 5.2e-23 112.1 108 54.6
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 8.9e-23 111.3 79 63.3
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 8.9e-23 111.3 145 46.9
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 1.3e-21 107.5 169 42.0
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.9e-21 106.3 188 35.6
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 5.4e-20 102.1 114 51.8
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 3.6e-16 89.4 152 40.8
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 6.4e-13 78.6 109 43.1
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 7.0e-12 75.1 149 31.5
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 3.3e-09 66.2 142 29.6
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 4.7e-08 62.4 129 29.5
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.5e-06 57.4 65 44.6


User provided reference genes

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