Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04523 Beta vulgaris HOM05D004062 ORTHO05D004417 1.3e-76 289.7 146 100.0
AUR62023219 Chenopodium quinoa HOM05D004062 ORTHO05D004417 1.7e-52 209.5 147 70.7
AUR62044612 Chenopodium quinoa HOM05D004062 ORTHO05D004417 1.7e-52 209.5 147 70.7
Ah.16g101490 Amaranthus hybridus HOM05D004062 ORTHO05D004417 8.7e-49 197.2 148 69.6
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 2.1e-26 122.9 132 51.5
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 6.7e-25 117.9 140 47.9
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 1.3e-20 103.6 141 44.0
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 2.9e-20 102.4 148 43.2
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 2.9e-20 102.4 144 43.1
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 3.8e-20 102.1 148 43.2
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 5.0e-20 101.7 138 43.5
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 8.5e-20 100.9 143 38.5
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 2.5e-19 99.4 138 42.8
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 7.2e-19 97.8 146 39.7
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 7.2e-19 97.8 143 44.8
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 1.2e-18 97.1 131 43.5
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 2.1e-18 96.3 142 43.0
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 4.7e-18 95.1 136 39.0
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 3.9e-17 92.0 146 38.4
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 3.9e-17 92.0 140 41.4
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 6.7e-17 91.3 138 42.0
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 6.7e-17 91.3 145 41.4
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 6.7e-17 91.3 145 41.4
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 8.8e-17 90.9 139 38.8
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.0e-16 89.7 141 40.4
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 2.6e-16 89.4 142 40.1
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 4.4e-16 88.6 129 40.3
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 5.7e-16 88.2 125 43.2
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 5.7e-16 88.2 137 40.9
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 5.7e-16 88.2 137 40.9
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 7.4e-16 87.8 129 45.0
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 7.4e-16 87.8 134 39.6
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.3e-15 87.0 137 39.4
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.7e-15 86.7 132 38.6
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 3.7e-15 85.5 132 35.6
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 3.7e-15 85.5 134 43.3
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 4.8e-15 85.1 141 38.3
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 8.2e-15 84.3 144 41.7
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 1.1e-14 84.0 135 36.3
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.1e-14 84.0 138 39.1
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 2.4e-14 82.8 132 38.6
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 4.1e-14 82.0 130 38.5
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 5.3e-14 81.6 129 41.1
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 9.1e-14 80.9 140 37.1
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 1.2e-13 80.5 130 45.4
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 1.6e-13 80.1 135 43.7
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 2.0e-13 79.7 144 39.6
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 2.0e-13 79.7 132 38.6
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 2.6e-13 79.3 145 34.5
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 2.6e-13 79.3 135 39.3
Migut.L00492 Erythranthe guttata HOM05D004062 ORTHO05D004417 3.5e-13 79.0 136 37.5
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 3.5e-13 79.0 146 39.0
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 3.5e-13 79.0 136 36.0
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 4.5e-13 78.6 128 40.6
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 5.9e-13 78.2 139 35.3
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 7.7e-13 77.8 136 36.0
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 1.0e-12 77.4 134 41.8
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 1.3e-12 77.0 138 38.4
Psat3g097360 Pisum sativum HOM05D004062 ORTHO05D004417 1.3e-12 77.0 138 40.6
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 1.3e-12 77.0 125 40.8
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 1.7e-12 76.6 134 41.8
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 2.2e-12 76.3 138 38.4
Oeu008332.1 Olea europaea HOM05D003529 ORTHO05D004106 2.2e-12 76.3 129 38.8
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 2.9e-12 75.9 129 38.8
Ca_08096_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 3.8e-12 75.5 138 38.4
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 3.8e-12 75.5 129 39.5
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 5.0e-12 75.1 133 39.1
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 6.5e-12 74.7 138 38.4
Oeu030797.1 Olea europaea HOM05D004062 ORTHO05D004417 8.5e-12 74.3 134 40.3
Oeu030798.1 Olea europaea HOM05D004062 ORTHO05D004417 8.5e-12 74.3 134 40.3
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.5e-11 73.6 131 40.5
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 1.5e-11 73.6 138 37.7
DCAR_010707 Daucus carota HOM05D004062 ORTHO05D004417 2.5e-11 72.8 132 39.4
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 3.2e-11 72.4 134 38.8
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 7.2e-11 71.2 139 33.1
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 9.4e-11 70.9 139 33.1
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 1.2e-10 70.5 131 29.0
SalBow3G0055 Salvia bowleyana HOM05D004062 ORTHO05D004417 1.2e-10 70.5 90 42.2
TPR.G16550 Trifolium pratense HOM05D004062 ORTHO05D004417 1.2e-10 70.5 135 40.0
Cc01_g21210 Coffea canephora HOM05D003529 ORTHO05D004106 1.6e-10 70.1 130 36.2
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 1.6e-10 70.1 124 37.9
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 1.6e-10 70.1 139 33.1
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.6e-10 70.1 139 33.1
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.6e-10 70.1 139 33.1
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 1.6e-10 70.1 133 34.6
CsaV3_4G001080 Cucumis sativus L. HOM05D003529 ORTHO05D004106 2.1e-10 69.7 135 34.1
DCAR_010710 Daucus carota HOM05D004062 ORTHO05D004417 2.1e-10 69.7 135 34.1
DCAR_010711 Daucus carota HOM05D004062 ORTHO05D004417 2.1e-10 69.7 135 34.8
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.1e-10 69.7 139 33.1
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 2.1e-10 69.7 136 34.6
ClCG10G011190 Citrullus lanatus HOM05D003529 ORTHO05D004106 2.7e-10 69.3 135 34.1
TPR.G16561 Trifolium pratense HOM05D004062 ORTHO05D004417 2.7e-10 69.3 136 39.7
Ciclev10017837m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.6e-10 68.9 131 32.1
DCAR_010708 Daucus carota HOM05D004062 ORTHO05D004417 6.1e-10 68.2 138 37.7
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 6.1e-10 68.2 135 31.1
Ciclev10017934m.g Citrus clementina HOM05D004062 ORTHO05D004417 8.0e-10 67.8 130 33.8
MELO3C017929.2 Cucumis melo HOM05D003529 ORTHO05D004106 8.0e-10 67.8 133 33.8
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 8.0e-10 67.8 135 30.4
Psat3g097320 Pisum sativum HOM05D004062 ORTHO05D004417 1.0e-09 67.4 134 39.6
FvH4_4g26620 Fragaria vesca HOM05D004062 ORTHO05D004417 1.4e-09 67.0 137 34.3
FAN12G1602 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.4e-09 67.0 137 34.3
FAN17G2061 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.4e-09 67.0 137 33.6
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.4e-09 67.0 137 30.7
CiPaw.05G243400 Carya illinoinensis HOM05D004062 ORTHO05D004417 1.8e-09 66.6 124 33.1
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 3.0e-09 65.9 114 38.6
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 3.0e-09 65.9 114 38.6
FAN07G0530 Fragaria x ananassa HOM05D004062 ORTHO05D004417 3.0e-09 65.9 137 33.6
arahy.Tifrunner.gnm1.ann1.95RUG0 Arachis hypogaea HOM05D004062 ORTHO05D004417 4.0e-09 65.5 142 38.0
arahy.Tifrunner.gnm1.ann1.EB5M6E Arachis hypogaea HOM05D004062 ORTHO05D004417 4.0e-09 65.5 142 38.0
FAN12G1821 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.0e-09 65.5 137 33.6
Migut.D00112 Erythranthe guttata HOM05D003529 ORTHO05D004106 8.8e-09 64.3 131 36.6
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 8.8e-09 64.3 135 32.6
DCAR_010709 Daucus carota HOM05D004062 ORTHO05D004417 1.2e-08 63.9 143 35.7
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.5e-08 63.5 136 33.8
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.0e-08 63.2 136 34.6
Oeu041981.1 Olea europaea HOM05D004062 ORTHO05D004417 2.0e-08 63.2 94 44.7
FvH4_4g26590 Fragaria vesca HOM05D004062 ORTHO05D004417 2.6e-08 62.8 137 32.8
SGA_v2.0_scaffold334G49044 Striga asiatica HOM05D003529 ORTHO05D004106 2.6e-08 62.8 135 31.9
DCAR_010712 Daucus carota HOM05D004062 ORTHO05D004417 3.3e-08 62.4 115 39.1
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 3.3e-08 62.4 136 35.3
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 3.3e-08 62.4 119 38.7
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 5.7e-08 61.6 134 34.3
Nitab4.5_0005587g0040 Nicotiana tabacum HOM05D003529 ORTHO05D004106 5.7e-08 61.6 128 35.2
Oeu006461.1 Olea europaea HOM05D003529 ORTHO05D004106 5.7e-08 61.6 138 34.1
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 7.5e-08 61.2 136 31.6
Dinv10056 Davidia involucrata HOM05D003529 ORTHO05D004106 7.5e-08 61.2 130 33.8
FAN12G3833 Fragaria x ananassa HOM05D004062 ORTHO05D004417 7.5e-08 61.2 134 32.8
Peaxi162Scf00001g00294 Petunia axillaris HOM05D003529 ORTHO05D004106 7.5e-08 61.2 145 33.1
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 7.5e-08 61.2 135 30.4
FAN22G1944 Fragaria x ananassa HOM05D004062 ORTHO05D004417 9.7e-08 60.8 139 34.5
Hma1.2p1_0212F.1_g090160 Hydrangea macrophylla HOM05D003529 ORTHO05D004106 1.3e-07 60.5 131 34.4
Medtr1g087775 Medicago truncatula HOM05D003529 ORTHO05D004106 1.3e-07 60.5 138 29.7
Nitab4.5_0001544g0150 Nicotiana tabacum HOM05D003529 ORTHO05D004106 1.3e-07 60.5 132 36.4
HPP92_006902 Vanilla planifolia HOM05D003529 ORTHO05D004106 1.3e-07 60.5 130 32.3
Cc01_g04570 Coffea canephora HOM05D003529 ORTHO05D004106 2.2e-07 59.7 138 33.3
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.2e-07 59.7 138 31.2
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 2.8e-07 59.3 131 35.1
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.8e-07 59.3 134 30.6
Oeu011480.1 Olea europaea HOM05D003529 ORTHO05D004106 2.8e-07 59.3 134 31.3
AT2G47485 Arabidopsis thaliana HOM05D003529 ORTHO05D004106 3.7e-07 58.9 135 34.8
CiPaw.07G113900 Carya illinoinensis HOM05D003529 ORTHO05D004106 3.7e-07 58.9 132 29.5
Thhalv10001673m.g Eutrema salsugineum HOM05D003529 ORTHO05D004106 3.7e-07 58.9 135 34.1
FvH4_4g26582 Fragaria vesca HOM05D004062 ORTHO05D004417 3.7e-07 58.9 137 35.0
BcaC07g40776 Brassica carinata HOM05D003529 ORTHO05D004106 6.3e-07 58.2 134 35.1
Haze_00662 Corylus avellana HOM05D004062 ORTHO05D004417 6.3e-07 58.2 132 30.3
TPR.G19765 Trifolium pratense HOM05D003529 ORTHO05D004106 6.3e-07 58.2 138 30.4
A07p26020 Brassica napus HOM05D003529 ORTHO05D004106 8.2e-07 57.8 130 34.6
BolC6t38003H Brassica oleracea HOM05D003529 ORTHO05D004106 8.2e-07 57.8 130 34.6
BraA07t30250Z Brassica rapa HOM05D003529 ORTHO05D004106 8.2e-07 57.8 130 34.6
FAN22G1832 Fragaria x ananassa HOM05D004062 ORTHO05D004417 8.2e-07 57.8 137 31.4
SGA_v2.0_scaffold376G50256 Striga asiatica HOM05D003529 ORTHO05D004106 8.2e-07 57.8 137 29.2
A09p54520 Brassica napus HOM05D003529 ORTHO05D004106 1.1e-06 57.4 134 34.3
BraA09t40864Z Brassica rapa HOM05D003529 ORTHO05D004106 1.1e-06 57.4 134 34.3
Lj2P1201T47 Lonicera japonica HOM05D003529 ORTHO05D004106 1.1e-06 57.4 131 32.8
RcHm_v2.0_Chr4g0434241 Rosa chinensis HOM05D004062 ORTHO05D004417 1.1e-06 57.4 139 33.1
Sp4g29420 Schrenkiella parvula HOM05D003529 ORTHO05D004106 1.4e-06 57.0 135 33.3
THA.LOC104817473 Tarenaya hassleriana HOM05D003529 ORTHO05D004106 1.4e-06 57.0 136 34.6
BcaB02g07332 Brassica carinata HOM05D003529 ORTHO05D004106 1.8e-06 56.6 130 36.2
BcaC08g45209 Brassica carinata HOM05D003529 ORTHO05D004106 1.8e-06 56.6 129 34.9
C08p37400 Brassica napus HOM05D003529 ORTHO05D004106 1.8e-06 56.6 134 33.6
CARHR142880 Cardamine hirsuta HOM05D003529 ORTHO05D004106 1.8e-06 56.6 135 32.6
DCAR_025900 Daucus carota HOM05D004062 ORTHO05D004417 2.4e-06 56.2 131 35.9
Nn3g21602 Nelumbo nucifera HOM05D003529 ORTHO05D004106 2.4e-06 56.2 140 32.1
Nitab4.5_0000116g0160 Nicotiana tabacum HOM05D003529 ORTHO05D004106 2.4e-06 56.2 142 33.1
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 2.4e-06 56.2 134 32.8
AL4G47050 Arabidopsis lyrata HOM05D003529 ORTHO05D004106 3.1e-06 55.8 135 34.1
Dinv33090 Davidia involucrata HOM05D003529 ORTHO05D004106 3.1e-06 55.8 150 30.7
Peaxi162Scf00147g00094 Petunia axillaris HOM05D003529 ORTHO05D004106 3.1e-06 55.8 127 37.0
CSS0011800 Camellia sinensis var. sinensis HOM05D003529 ORTHO05D004106 4.1e-06 55.5 140 31.4
Sed0005967 Sechium edule HOM05D003529 ORTHO05D004106 4.1e-06 55.5 132 34.1
CANSAT25G0832 Cannabis sativa HOM05D003529 ORTHO05D004106 5.3e-06 55.1 127 33.9
Actinidia25830 Actinidia chinensis HOM05D001306 ORTHO05D001159 7.0e-06 54.7 134 32.8
Aa31LG10G16460 Aethionema arabicum HOM05D003529 ORTHO05D004106 7.0e-06 54.7 137 31.4
Aqoxy3G00188 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 7.0e-06 54.7 130 33.8
BcaC07g40741 Brassica carinata HOM05D003529 ORTHO05D004106 7.0e-06 54.7 134 32.8
BolC8t51321H Brassica oleracea HOM05D003529 ORTHO05D004106 7.0e-06 54.7 134 32.8
Hma1.2p1_0494F.1_g165600 Hydrangea macrophylla HOM05D003529 ORTHO05D004106 7.0e-06 54.7 149 30.9
Psat6g162960 Pisum sativum HOM05D003529 ORTHO05D004106 7.0e-06 54.7 138 32.6
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 7.0e-06 54.7 144 33.3
Sp5g00860 Schrenkiella parvula HOM05D003529 ORTHO05D004106 9.1e-06 54.3 130 35.4


User provided reference genes

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